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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:5.7TPM
GTEx:15.4RPKM
FANTOM5:18.9Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Low
Glandular cells:Low
Myoepithelial cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA020637

 

Antibody HPA020728

 

Antibody HPA020734

 

Adipocytes

Low   Medium   Not detected  

Glandular cells

Not detected   Low   Not detected  

Myoepithelial cells

Not detected   Not detected   Not detected  
     
     
     

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

5.7

overview Female, age 52
Sample 1
TPM: 5.1
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80
Sample 2
TPM: 3.3
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47
Sample 3
TPM: 4.4
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38
Sample 4
TPM: 10.0
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

15.4

GTEx sample id

RPKM

 

Breast - Mammary Tissue

Breast - Mammary Tissue
RPKM: 15.4
Samples: 214

Max RPKM: 58
Min RPKM: 2.1
Std RPKM: 9.1
Median RPKM: 12.7
GTEX-ZA64-1526-SM-5CVMD 58.0
GTEX-Y9LG-1426-SM-5IFJZ 46.6
GTEX-Y8LW-1626-SM-5IFHX 46.4
GTEX-ZZ64-1226-SM-5E43R 41.6
GTEX-S4UY-0726-SM-4AD6X 40.9
GTEX-ZF29-1926-SM-5S2P1 40.5
GTEX-11P82-1326-SM-5HL62 40.3
GTEX-ZTX8-1226-SM-4YCE9 38.1
GTEX-12BJ1-1826-SM-5HL9N 37.4
GTEX-XBED-1626-SM-47JYN 37.2
GTEX-ZLFU-2126-SM-4WWEV 35.2
GTEX-1211K-1926-SM-5EQLB 33.9
GTEX-XGQ4-0926-SM-4AT4U 33.0
GTEX-ZQUD-1926-SM-51MSA 31.8
GTEX-139T6-1626-SM-5PNYZ 31.3
GTEX-TMMY-0726-SM-33HBE 31.3
GTEX-145ME-1526-SM-5Q5F2 31.1
GTEX-T6MO-0326-SM-32QOK 31.1
GTEX-11ZTT-2326-SM-5EQLG 31.0
GTEX-WYJK-1326-SM-3NB2T 30.9
GTEX-117YX-1426-SM-5H12H 30.3
GTEX-U412-1826-SM-4DXTJ 30.1
GTEX-11LCK-2426-SM-5HL5F 28.3
GTEX-ZPIC-1126-SM-5BC7F 27.9
GTEX-YB5K-1626-SM-5IFIN 27.5
GTEX-13O61-1826-SM-5KM4I 27.3
GTEX-REY6-2426-SM-48FF5 27.0
GTEX-ZQG8-0726-SM-5P9H9 25.4
GTEX-YB5E-1726-SM-5IFJ3 25.3
GTEX-R55F-1726-SM-2TF4R 24.9
GTEX-13CF3-2126-SM-5IFJP 23.9
GTEX-13W3W-1226-SM-5LU4H 23.6
GTEX-ZV7C-1826-SM-5NQ83 23.5
GTEX-13FTX-1126-SM-5N9EN 22.9
GTEX-ZDTT-2126-SM-5S2OJ 22.8
GTEX-R55D-0826-SM-48FEA 22.3
GTEX-Y5LM-1726-SM-4VDSX 22.2
GTEX-1122O-1226-SM-5H113 22.1
GTEX-11DXZ-1926-SM-5GZZL 21.9
GTEX-145MN-1926-SM-5SIAI 21.9
GTEX-YFCO-1826-SM-4W1YH 21.9
GTEX-132Q8-1426-SM-5EGK7 21.0
GTEX-1399U-1826-SM-5PNZ1 20.9
GTEX-Y3I4-1526-SM-4TT7K 20.9
GTEX-RWS6-1926-SM-47JXY 20.5
GTEX-12KS4-0126-SM-5Q5A5 20.4
GTEX-12WSK-2226-SM-5GCO5 20.1
GTEX-PSDG-1626-SM-48TCQ 20.1
GTEX-WXYG-2226-SM-4E3IM 19.9
GTEX-UTHO-1026-SM-3GAF7 19.8
GTEX-YEC3-1026-SM-5IFI5 19.7
GTEX-13N1W-0626-SM-5MR4U 19.6
GTEX-14753-2426-SM-5LU8U 19.3
GTEX-Y5V6-2126-SM-4WWFX 19.3
GTEX-ZDYS-1126-SM-5K7UB 18.9
GTEX-QEL4-2126-SM-447AE 18.8
GTEX-S4Q7-1126-SM-4AD6R 18.8
GTEX-111YS-1926-SM-5GICC 18.6
GTEX-ZAB4-2526-SM-5HL8M 18.3
GTEX-ZU9S-1926-SM-5NQBP 18.3
GTEX-ZAJG-0626-SM-5HL8X 18.2
GTEX-XUJ4-1926-SM-4BOOV 18.0
GTEX-ZYW4-0826-SM-5GIDG 17.8
GTEX-WI4N-1426-SM-3LK7H 17.3
GTEX-WFON-1826-SM-3GILG 16.9
GTEX-S4P3-1326-SM-4AD6V 16.8
GTEX-ZXES-0826-SM-5E43C 16.5
GTEX-12WSN-1326-SM-5GCNT 16.3
GTEX-S341-1526-SM-4AD6K 16.3
GTEX-WYBS-0926-SM-3NM94 16.3
GTEX-QEG5-0726-SM-4R1JQ 16.2
GTEX-QMRM-1626-SM-4R1KV 15.9
GTEX-11I78-2226-SM-5PNYA 15.8
GTEX-13N11-1726-SM-5J1OJ 15.7
GTEX-147F4-2826-SM-5NQBN 15.7
GTEX-X4EP-2926-SM-3P5YQ 15.7
GTEX-11EM3-1326-SM-5N9C6 15.6
GTEX-ZT9W-2026-SM-51MRA 15.1
GTEX-X261-0626-SM-3NMD9 15.0
GTEX-13113-1726-SM-5GCOO 14.7
GTEX-13FTW-1426-SM-5LZWZ 14.7
GTEX-ZZPU-0626-SM-5E43T 14.7
GTEX-1313W-0826-SM-5EQ4T 14.6
GTEX-Y114-2026-SM-4TT7L 14.6
GTEX-UJHI-1426-SM-3DB9C 14.3
GTEX-XMD1-0826-SM-4AT52 14.2
GTEX-ZV6S-1826-SM-5NQ8D 14.2
GTEX-11WQK-2426-SM-5GU5C 14.1
GTEX-T2YK-2226-SM-32QPT 13.9
GTEX-X4XY-0926-SM-4E3JD 13.9
GTEX-XOT4-0726-SM-4GIAW 13.9
GTEX-XUW1-2326-SM-4BOO5 13.9
GTEX-U3ZN-1926-SM-4DXSG 13.7
GTEX-SE5C-2126-SM-4BRUJ 13.5
GTEX-ZVT4-1026-SM-57WC4 13.5
GTEX-11P7K-0726-SM-5EGKX 13.4
GTEX-W5X1-2326-SM-3GIL6 13.4
GTEX-1192X-2326-SM-5987X 13.2
GTEX-11EMC-2026-SM-5A5JV 13.1
GTEX-XQ8I-2426-SM-4WAXY 13.1
GTEX-12WSM-1726-SM-5BC6J 13.0
GTEX-S32W-2026-SM-4AD6E 13.0
GTEX-ZEX8-2226-SM-57WC6 13.0
GTEX-U3ZH-1426-SM-4DXSR 12.9
GTEX-13PVQ-1026-SM-5KM3M 12.8
GTEX-145MO-0826-SM-5NQBL 12.8
GTEX-14E6E-1326-SM-5S2NR 12.7
GTEX-QVJO-1826-SM-447C9 12.7
GTEX-ZF2S-2026-SM-5E461 12.7
GTEX-13O3P-0826-SM-5L3DH 12.4
GTEX-13NZ8-0126-SM-5IJCT 12.3
GTEX-ZF3C-2326-SM-5S2MZ 12.2
GTEX-TML8-1226-SM-32QON 12.1
GTEX-1117F-2826-SM-5GZXL 11.9
GTEX-139TU-0626-SM-5KM3X 11.9
GTEX-X15G-1626-SM-3NMB3 11.9
GTEX-117XS-1926-SM-5GICO 11.8
GTEX-ZYT6-0126-SM-5E45J 11.8
GTEX-T6MN-0726-SM-32PML 11.7
GTEX-131YS-0626-SM-5EGKL 11.6
GTEX-13D11-1026-SM-5IJFB 11.6
GTEX-13OW8-0226-SM-5K7UP 11.6
GTEX-WYVS-1726-SM-3NMAY 11.6
GTEX-QDT8-0626-SM-48TYW 11.5
GTEX-XV7Q-2326-SM-4BRVZ 11.5
GTEX-TKQ1-0226-SM-33HB5 11.4
GTEX-T5JC-2126-SM-32PMO 11.2
GTEX-ZYWO-2326-SM-5GZY4 11.2
GTEX-13OW5-2226-SM-5L3HC 11.1
GTEX-145LT-0726-SM-5S2VM 11.1
GTEX-12WSB-0626-SM-59HJO 11.0
GTEX-ZVE2-1226-SM-5NQ8R 11.0
GTEX-ZVT2-1826-SM-5NQ8W 11.0
GTEX-144GM-0926-SM-5O994 10.9
GTEX-YFC4-1426-SM-5IFJG 10.9
GTEX-ZLV1-1426-SM-4WWES 10.9
GTEX-11DXW-0626-SM-5N9ER 10.8
GTEX-WY7C-2726-SM-3NB3P 10.8
GTEX-ZY6K-1626-SM-5GZWV 10.8
GTEX-11GS4-2126-SM-5A5KR 10.7
GTEX-13FTY-2226-SM-5J1ND 10.7
GTEX-XMK1-1126-SM-4IHJ8 10.6
GTEX-11EQ9-1826-SM-5Q5AJ 10.3
GTEX-13FHO-0826-SM-5L3E8 10.3
GTEX-Y3IK-2326-SM-4WWDT 10.3
GTEX-11PRG-0826-SM-5EQ6A 10.1
GTEX-131XW-0726-SM-5EGK3 10.1
GTEX-Q2AG-0326-SM-48U1O 10.1
GTEX-R53T-1526-SM-48FEK 10.0
GTEX-ZDXO-0126-SM-5S2ND 10.0
GTEX-ZWKS-2826-SM-5NQ74 10.0
GTEX-11NV4-2026-SM-5N9DG 9.9
GTEX-132NY-0826-SM-5K7Y7 9.9
GTEX-13CF2-2026-SM-5K7VI 9.9
GTEX-WRHU-0326-SM-3MJFY 9.9
GTEX-11ONC-2126-SM-5HL6E 9.8
GTEX-13O3Q-2226-SM-5KM4O 9.8
GTEX-13QIC-2326-SM-5LU5N 9.8
GTEX-Y5V5-2126-SM-4WWFO 9.8
GTEX-R3RS-0626-SM-48FE1 9.6
GTEX-1269C-2426-SM-5FQSN 9.5
GTEX-133LE-1726-SM-5K7VQ 9.5
GTEX-ZVTK-0326-SM-51MRR 9.5
GTEX-ZUA1-1526-SM-59HLS 9.3
GTEX-11GSO-1926-SM-5A5K3 9.0
GTEX-RU72-0626-SM-46MUI 9.0
GTEX-13PL6-2926-SM-5L3I2 8.9
GTEX-146FH-0826-SM-5SI8T 8.8
GTEX-13W46-0826-SM-5LU3H 8.7
GTEX-144GL-2026-SM-5LU3O 8.7
GTEX-UPK5-2326-SM-3P5Z8 8.7
GTEX-1314G-1226-SM-5BC6D 8.6
GTEX-11NSD-0926-SM-5N9DR 8.5
GTEX-T2IS-1526-SM-32QPR 8.4
GTEX-XQ3S-1326-SM-4BOPQ 8.4
GTEX-11P81-1926-SM-5BC53 8.3
GTEX-12ZZX-1126-SM-5EGKB 8.2
GTEX-T5JW-2026-SM-4DM63 8.2
GTEX-Y111-2026-SM-4SOJA 8.2
GTEX-11OF3-1926-SM-59889 8.1
GTEX-13NZB-2126-SM-5MR4Y 7.9
GTEX-XMD2-0926-SM-4WWEF 7.9
GTEX-Y8E4-1626-SM-5S2MW 7.8
GTEX-11EI6-0626-SM-5985T 7.6
GTEX-TKQ2-1826-SM-33HB2 7.6
GTEX-VJWN-0726-SM-3GIJ8 7.6
GTEX-ZC5H-2626-SM-5J2MG 7.6
GTEX-ZYFC-0826-SM-5E44K 7.5
GTEX-YJ8O-2226-SM-5IFHW 7.4
GTEX-XUZC-1626-SM-4BRVP 7.3
GTEX-11O72-2126-SM-5N9FO 7.2
GTEX-132AR-0826-SM-5EGK6 7.2
GTEX-VUSG-2226-SM-4KKZO 7.2
GTEX-11WQC-1726-SM-5GU4W 6.9
GTEX-11ZUS-0826-SM-5FQUY 6.9
GTEX-139T8-0826-SM-5L3DE 6.9
GTEX-ZVZQ-0826-SM-51MRF 6.8
GTEX-11DXY-2326-SM-5GICW 6.7
GTEX-RUSQ-2026-SM-4GIAK 6.7
GTEX-S7SE-0826-SM-4AT4D 6.7
GTEX-WOFL-0826-SM-3MJG1 6.7
GTEX-ZTTD-1026-SM-51MRD 6.7
GTEX-SIU7-1626-SM-4BRUK 6.6
GTEX-13O3O-0826-SM-5K7WE 6.3
GTEX-13NZ9-1026-SM-5MR5K 6.2
GTEX-11DZ1-0326-SM-5N9BN 6.1
GTEX-11TT1-2126-SM-5GU5Y 6.0
GTEX-11TUW-1826-SM-5BC5D 4.0
GTEX-S33H-0326-SM-4AD6N 4.0
GTEX-14AS3-1626-SM-5S2OY 3.9
GTEX-XYKS-1326-SM-4BRUN 3.4
GTEX-U8XE-0826-SM-4E3J1 2.5
GTEX-13S86-1226-SM-5S2OA 2.2
GTEX-14ABY-2126-SM-5QGQZ 2.1
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

18.9

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 18.9
FF:10080-102A8 77 years, female 18.9

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