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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 14.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 29.6
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 8.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 15.0
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 19.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 8.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 20.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 17.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 61.7
Min RPKM: 2.2
Std RPKM: 9.3
Median RPKM: 9.5
GTEX-ZVT4-0626-SM-5E45T
61.7
GTEX-ZAB4-0826-SM-5LU9D
50.9
GTEX-RWSA-1426-SM-47JXA
34.2
GTEX-13OW6-2626-SM-5IFF2
32.8
GTEX-13PVR-0126-SM-5S2PY
29.4
GTEX-13113-1326-SM-5GCOI
27.7
GTEX-X3Y1-2726-SM-4PQZH
27.6
GTEX-11DXZ-0126-SM-5EGGY
27.2
GTEX-WFON-1726-SM-4LVMQ
26.6
GTEX-OOBJ-0826-SM-3NB2K
26.3
GTEX-11OF3-0726-SM-5BC4Z
26.0
GTEX-Z9EW-0426-SM-5CVM9
26.0
GTEX-13FTW-1126-SM-5J2NV
25.6
GTEX-S4Z8-0526-SM-4AD4T
23.6
GTEX-ZF29-2026-SM-4WWB7
21.9
GTEX-14E1K-0326-SM-5S2PE
21.2
GTEX-ZYT6-0626-SM-5E45V
19.3
GTEX-11NUK-1226-SM-5P9GM
19.2
GTEX-RNOR-1426-SM-48FDJ
19.0
GTEX-14753-1626-SM-5NQ9L
18.0
GTEX-RM2N-1926-SM-48FCU
17.4
GTEX-QV44-0326-SM-4R1KD
17.0
GTEX-ZF2S-3026-SM-4WWCH
16.7
GTEX-12WSM-0726-SM-5GCOW
16.5
GTEX-131YS-1626-SM-5HL6C
16.5
GTEX-14AS3-0126-SM-5Q5F4
16.2
GTEX-11DXY-0526-SM-5EGGQ
16.1
GTEX-145LU-1326-SM-5LU9N
15.9
GTEX-12696-0826-SM-5EGGE
15.6
GTEX-ZVP2-0626-SM-51MSO
15.1
GTEX-11ZVC-0726-SM-5FQT9
15.0
GTEX-11ZTS-1426-SM-5EQMM
14.8
GTEX-12WSD-1426-SM-5GCN9
14.7
GTEX-UTHO-2426-SM-4JBHD
14.6
GTEX-11GSP-0626-SM-5986T
14.5
GTEX-13QJC-0726-SM-5RQJK
14.2
GTEX-QESD-2026-SM-447BI
14.2
GTEX-11NV4-1326-SM-5HL6V
13.4
GTEX-ZAB5-0426-SM-5CVMI
13.2
GTEX-131XH-0626-SM-5LZWH
12.8
GTEX-X4EO-1126-SM-4QARQ
12.7
GTEX-14DAQ-1726-SM-5S2R2
12.1
GTEX-13112-1426-SM-5EGH8
11.9
GTEX-WYVS-1926-SM-4PQZ2
11.7
GTEX-XOTO-0826-SM-4B65O
11.5
GTEX-YEC4-0826-SM-5P9FV
11.2
GTEX-R53T-0326-SM-48FEC
10.9
GTEX-YECK-1926-SM-4W21H
10.9
GTEX-T6MN-1226-SM-3NMA5
10.8
GTEX-X4EP-1026-SM-4QAS5
10.7
GTEX-Y5V5-0926-SM-4VBPZ
10.7
GTEX-14A5I-1726-SM-5QGQ5
10.5
GTEX-UPIC-0926-SM-4IHLV
10.5
GTEX-RN64-1826-SM-48FDV
10.4
GTEX-RTLS-1326-SM-46MUN
10.3
GTEX-13N11-0926-SM-5IJG2
10.2
GTEX-145MF-0826-SM-5QGQA
10.2
GTEX-SJXC-1226-SM-4DM78
10.1
GTEX-WQUQ-1926-SM-4OOSA
9.7
GTEX-1399R-1226-SM-5P9GF
9.5
GTEX-REY6-1226-SM-48FDR
9.5
GTEX-13N2G-0926-SM-5IFGJ
9.1
GTEX-12WSG-0626-SM-5FQTQ
9.0
GTEX-Q734-0326-SM-48U15
8.9
GTEX-1212Z-0226-SM-59HLF
8.6
GTEX-U3ZN-0226-SM-3DB8D
8.6
GTEX-13VXU-0926-SM-5IFFH
8.5
GTEX-ZVT3-1626-SM-5GU66
8.4
GTEX-YFC4-1526-SM-5IFJS
7.7
GTEX-147F4-1426-SM-5LUA8
7.6
GTEX-QDVN-0826-SM-48TZ2
7.5
GTEX-QEG4-1826-SM-4R1JN
7.5
GTEX-X261-1726-SM-4PQYT
7.5
GTEX-11EQ9-0526-SM-5A5JZ
7.2
GTEX-ZZPU-0426-SM-5GZYH
7.2
GTEX-11WQC-0726-SM-5EQMR
7.1
GTEX-13NZB-0626-SM-5IFH6
7.1
GTEX-S32W-1926-SM-4AD63
6.8
GTEX-1269C-0626-SM-5FQSS
6.7
GTEX-145MO-2326-SM-5NQ9K
6.6
GTEX-12ZZZ-1326-SM-59HKW
6.3
GTEX-XBEC-1526-SM-4AT68
6.3
GTEX-13NYB-1026-SM-5IFH3
6.1
GTEX-QEL4-1226-SM-447A4
5.9
GTEX-ZYY3-0626-SM-5NQ6W
5.9
GTEX-ZPU1-0826-SM-57WG2
5.7
GTEX-12WSI-0226-SM-5GCNA
5.6
GTEX-UPK5-1426-SM-4JBHH
5.6
GTEX-139TU-0826-SM-5IJFG
5.5
GTEX-11ZUS-2526-SM-59872
5.3
GTEX-1399T-0826-SM-5IFES
5.3
GTEX-132NY-0926-SM-5P9G3
5.2
GTEX-13FLV-0326-SM-5N9DJ
5.2
GTEX-13SLX-1226-SM-5S2Q6
5.2
GTEX-WZTO-0626-SM-4PQYY
5.1
GTEX-X4XY-1626-SM-46MVN
5.0
GTEX-12WSL-0226-SM-5CVMJ
4.9
GTEX-147JS-1126-SM-5RQIW
4.9
GTEX-YB5E-0326-SM-5IFHU
4.9
GTEX-14C38-1526-SM-5RQJ7
4.8
GTEX-131XE-0326-SM-5LZVO
4.7
GTEX-PX3G-0826-SM-48TZS
4.7
GTEX-12KS4-1326-SM-5LUB3
4.6
GTEX-P78B-1326-SM-3P611
4.4
GTEX-Q2AG-1126-SM-48U1P
4.4
GTEX-TKQ2-1726-SM-4DXUP
4.4
GTEX-13FTZ-0726-SM-5IFFY
3.8
GTEX-Y5LM-0426-SM-4VBRO
3.7
GTEX-13O3O-1826-SM-5IFGW
3.6
GTEX-ZTPG-1426-SM-51MT3
3.5
GTEX-146FH-1526-SM-5NQBU
3.3
GTEX-1497J-0726-SM-5Q5D1
3.3
GTEX-RU72-1426-SM-46MUF
3.1
GTEX-139YR-0226-SM-5IFEM
2.7
GTEX-144GM-1326-SM-5LU5E
2.6
GTEX-139TS-1426-SM-5IFJD
2.5
GTEX-13NZ9-1326-SM-5MR3V
2.2
GTEX-S33H-1626-SM-4AD68
2.2
GTEX-VUSG-0126-SM-4KL1X
2.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.