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TISSUE ATLAS PRIMARY DATA VAGINA

GENE/PROTEIN

Antibody validation


Dictionary

Vagina

VAGINA - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:10.7RPKM
FANTOM5:26.4Tags Per Million

VAGINA - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Squamous epithelial cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA020637

 

Antibody HPA020728

 

Antibody HPA020734

 

Squamous epithelial cells

Low   Low   Low  
     

VAGINA - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


VAGINA - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

10.7

GTEx sample id

RPKM

 

Vagina

Vagina
RPKM: 10.7
Samples: 96

Max RPKM: 42.1
Min RPKM: 1.7
Std RPKM: 7.1
Median RPKM: 8.4
GTEX-S4UY-1326-SM-4AD4X 42.1
GTEX-13W3W-2326-SM-5LU4Y 30.6
GTEX-13OVI-0926-SM-5J1MI 27.6
GTEX-W5WG-1026-SM-4LMIF 27.4
GTEX-147F3-1526-SM-5SIAK 25.5
GTEX-11GSP-2226-SM-5HL5Q 24.8
GTEX-13N11-1526-SM-5L3FL 24.5
GTEX-RWS6-1726-SM-47JXP 19.7
GTEX-P4PP-2526-SM-3P61P 19.3
GTEX-Y114-1926-SM-4TT8J 19.0
GTEX-XUW1-0326-SM-4BOOR 18.8
GTEX-11EM3-1826-SM-5A5KO 18.4
GTEX-ZV6S-1326-SM-59HJA 18.2
GTEX-14DAQ-2326-SM-5S2QX 18.2
GTEX-131YS-2426-SM-5J2OD 18.0
GTEX-RU1J-1426-SM-46MUV 17.1
GTEX-13QIC-1826-SM-5J1MY 17.0
GTEX-ZVT3-2726-SM-5GU5X 16.7
GTEX-ZQG8-1126-SM-51MRL 16.7
GTEX-OHPL-2526-SM-3MJGT 16.0
GTEX-12WSD-2926-SM-5LZUH 16.0
GTEX-QDT8-2526-SM-48TYX 15.8
GTEX-ZYWO-2026-SM-5GIDA 15.1
GTEX-UJHI-1326-SM-4IHJO 14.6
GTEX-146FR-2426-SM-5NQAU 14.4
GTEX-WEY5-0826-SM-4LMIH 13.7
GTEX-TSE9-2526-SM-4DXUS 13.4
GTEX-12WSJ-1326-SM-5GCOB 13.1
GTEX-YFC4-2926-SM-5IFJ8 13.0
GTEX-PLZ4-2726-SM-3P61A 12.4
GTEX-WRHU-2926-SM-4MVNQ 12.3
GTEX-ZGAY-2226-SM-4YCCX 12.2
GTEX-Y8LW-1426-SM-5RQJJ 12.2
GTEX-113JC-1926-SM-5N9GE 12.0
GTEX-13PVR-1426-SM-5S2PW 11.8
GTEX-1399U-1526-SM-5J2N7 11.5
GTEX-TMMY-1926-SM-4DXUU 11.0
GTEX-ZYVF-0326-SM-5GIES 10.6
GTEX-X15G-1926-SM-4PQZQ 10.3
GTEX-ZE7O-2426-SM-57WD7 10.1
GTEX-13PL7-2726-SM-5L3GB 9.8
GTEX-13U4I-2026-SM-5LU3L 9.8
GTEX-QCQG-1226-SM-48U23 9.8
GTEX-ZYY3-2626-SM-5N9DH 9.6
GTEX-131XG-2126-SM-5DUXG 8.7
GTEX-11TTK-2726-SM-5GU58 8.6
GTEX-11VI4-0726-SM-5GU5B 8.5
GTEX-X8HC-2826-SM-46MWJ 8.5
GTEX-12WSB-2426-SM-5EGJC 8.4
GTEX-YJ8O-1226-SM-5P9JE 8.2
GTEX-12ZZX-1926-SM-5EGKC 8.1
GTEX-XUJ4-1626-SM-4BONV 8.1
GTEX-PX3G-2526-SM-48TZV 8.0
GTEX-N7MT-1926-SM-3LK5N 7.9
GTEX-UPIC-1426-SM-4IHLQ 7.8
GTEX-ZVT2-0626-SM-5GICR 7.7
GTEX-13QBU-1726-SM-5IJFQ 7.2
GTEX-145ME-1426-SM-5RQJS 7.1
GTEX-ZTPG-2226-SM-57WF9 7.1
GTEX-14A5I-2726-SM-5SIB3 6.9
GTEX-NL3G-2526-SM-4SOIE 6.9
GTEX-ZXES-0626-SM-5E45P 6.9
GTEX-ZC5H-2226-SM-4WAWS 6.8
GTEX-OHPK-2526-SM-3MJH9 6.4
GTEX-14BMU-1926-SM-5S2QC 6.4
GTEX-P78B-2226-SM-3P5ZZ 6.3
GTEX-1399S-2326-SM-5K7YV 6.3
GTEX-PWOO-2026-SM-48TDE 6.2
GTEX-11P81-2126-SM-5HL6N 6.2
GTEX-146FH-2626-SM-5Q5E1 6.2
GTEX-PWCY-1726-SM-48TD3 6.0
GTEX-1117F-2526-SM-5GZY6 6.0
GTEX-S4P3-1126-SM-4AD52 5.8
GTEX-T2IS-1926-SM-4DM74 5.7
GTEX-QVJO-2526-SM-4R1KB 5.7
GTEX-Q734-1426-SM-48TZQ 5.4
GTEX-XV7Q-1626-SM-4BRWC 5.4
GTEX-ZP4G-0826-SM-4WWF3 4.8
GTEX-Y3IK-2226-SM-4YCD4 4.7
GTEX-13D11-1326-SM-5IJFY 4.7
GTEX-T6MO-1226-SM-4DM5S 4.5
GTEX-PWN1-2526-SM-48TDS 4.4
GTEX-TML8-1126-SM-4DXSS 4.3
GTEX-11DXX-1726-SM-5H11T 4.3
GTEX-11XUK-1326-SM-5EQM4 4.1
GTEX-11EMC-1926-SM-5A5JU 3.8
GTEX-ZZPU-2226-SM-5EGIV 3.3
GTEX-ZLWG-1126-SM-4WWFQ 3.1
GTEX-S341-1226-SM-4AD5S 3.0
GTEX-U3ZN-0926-SM-4DXTU 3.0
GTEX-S7SF-1426-SM-4AT5A 2.9
GTEX-11I78-2026-SM-5987C 2.9
GTEX-SE5C-1126-SM-4BRWZ 2.8
GTEX-ZAJG-2926-SM-5HL8P 2.8
GTEX-132AR-1626-SM-5EGHP 2.5
GTEX-14AS3-1726-SM-5RQJV 1.7
Show all

VAGINA - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

26.4

FANTOM5 sample id

Sample description

Tags Per Million

Vagina
Tags Per Million: 26.4
FF:10204-103F6 68 years, female 26.4

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