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TISSUE ATLAS PRIMARY DATA CEREBELLUM

GENE/PROTEIN

Antibody validation


Dictionary

Cerebellum

CEREBELLUM - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:86.5RPKM
FANTOM5:214.1Tags Per Million

CEREBELLUM - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in granular layer:Not detected
Cells in molecular layer:Low
Purkinje cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA027296

 

Antibody HPA054276

 

Antibody CAB047333

 

Cells in granular layer

Not detected   Low   Medium  

Cells in molecular layer

Low   Medium   Low  

Purkinje cells

Medium   Low   Medium  
     
     
     

CEREBELLUM - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


CEREBELLUM - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

86.5

GTEx sample id

RPKM

 

Brain - Cerebellar Hemisphere

Brain - Cerebellar Hemisphere
RPKM: 89.1
Samples: 105

Max RPKM: 189.5
Min RPKM: 24.8
Std RPKM: 28.9
Median RPKM: 86.4
GTEX-12WSC-0011-R11a-SM-5GU5J 189.5
GTEX-11ZUS-0011-R11b-SM-5BC7B 155.9
GTEX-T2IS-0011-R11A-SM-32QPC 150.5
GTEX-13X6J-0011-R11a-SM-5P9HE 144.5
GTEX-1313W-0011-R11a-SM-5DUXN 140.9
GTEX-12WSI-0011-R11b-SM-5P9EZ 133.9
GTEX-S7SE-0011-R11A-SM-2XCDD 133.1
GTEX-WWYW-0011-R11A-SM-3NB38 130.2
GTEX-ZUA1-0011-R11b-SM-51MTI 126.8
GTEX-T6MN-0011-R11A-SM-32QOX 126.6
GTEX-12ZZZ-0011-R11a-SM-5EGLC 126.1
GTEX-WL46-0011-R11A-SM-3MJFT 124.4
GTEX-145MH-0011-R11a-SM-5P9HQ 124.1
GTEX-12126-0011-R11a-SM-5BC6X 122.6
GTEX-13G51-0011-R11b-SM-5J2NE 120.5
GTEX-131XH-0011-R11a-SM-5EGLN 119.1
GTEX-WZTO-0011-R11A-SM-4E3K9 117.0
GTEX-ZVZQ-0011-R11a-SM-51MS6 115.7
GTEX-YFC4-0011-R11a-SM-4SOK6 114.8
GTEX-P44H-0011-R11A-SM-2XCER 112.7
GTEX-144GL-0011-R11b-SM-5P9F6 112.2
GTEX-1399T-0011-R11a-SM-5J2O1 111.8
GTEX-13VXU-0011-R11b-SM-5O9DJ 109.8
GTEX-12WSM-0011-R11a-SM-5DUX8 108.1
GTEX-T5JC-0011-R11A-SM-32PMB 107.4
GTEX-Y8DK-0011-R11A-SM-4SOK2 106.6
GTEX-WVLH-0011-R11A-SM-3MJFO 106.5
GTEX-13FXS-0011-R11a-SM-5L3DM 106.2
GTEX-N7MS-0011-R11A-SM-2HMJS 105.5
GTEX-14ABY-0011-R11a-SM-5SI7C 103.8
GTEX-139TT-0011-R11b-SM-5LZV1 103.3
GTEX-13X6K-0011-R11a-SM-5P9F5 103.0
GTEX-11H98-0011-R11b-SM-5NQ6U 102.7
GTEX-Z93S-0011-R11a-SM-4RGNN 101.3
GTEX-QMR6-0011-R11A-SM-32PKK 100.3
GTEX-YJ89-0011-R11a-SM-4SOKA 100.1
GTEX-ZDXO-0011-R11a-SM-4WWD9 97.9
GTEX-13O3O-0011-R11b-SM-5KM4G 97.1
GTEX-13OVH-0011-R11b-SM-5KM4X 95.3
GTEX-13O3Q-0011-R11b-SM-5KM2W 94.6
GTEX-12ZZX-0011-R11a-SM-5DUVJ 94.2
GTEX-13FLV-0011-R11a-SM-5LZZ7 93.7
GTEX-13OW7-0011-R11a-SM-5O9DY 92.0
GTEX-Q2AG-0011-R11A-SM-2HMKZ 91.7
GTEX-132Q8-0011-R11b-SM-5DUW9 90.9
GTEX-12WSE-0011-R11b-SM-5P9JW 90.8
GTEX-13JUV-0011-R11a-SM-5LZYH 90.3
GTEX-11OF3-0011-R11a-SM-57WCR 88.2
GTEX-13N2G-0011-R11a-SM-5MR3F 88.1
GTEX-13S7M-0011-R11b-SM-5P9HU 87.9
GTEX-13CF2-0011-R11b-SM-5LZXO 87.2
GTEX-13OW6-0011-R11a-SM-5L3H2 86.8
GTEX-131YS-0011-R11b-SM-5EGLM 86.4
GTEX-ZE7O-0011-R11a-SM-57WBC 85.7
GTEX-QDT8-0011-R11A-SM-32PKD 84.7
GTEX-UTHO-0011-R11A-SM-3GIJE 84.7
GTEX-R55E-0011-R11A-SM-2TC6I 84.1
GTEX-12WSH-0011-R11a-SM-5LZVM 83.7
GTEX-X261-0011-R11A-SM-4E3JY 83.4
GTEX-X585-0011-R11B-SM-46MUZ 83.3
GTEX-ZAB4-0011-R11a-SM-4SOKI 83.3
GTEX-12WSF-0011-R11a-SM-5LZVT 82.4
GTEX-XOTO-0011-R11B-SM-4B64O 82.3
GTEX-13OVL-0011-R11b-SM-5L3G7 81.3
GTEX-13NYB-0011-R11a-SM-5KM3Q 81.0
GTEX-13OW5-0011-R11b-SM-5L3GG 80.8
GTEX-TSE9-0011-R11A-SM-3DB7N 80.5
GTEX-13X6I-0011-R11a-SM-5P9HN 80.2
GTEX-NL4W-0011-R11A-SM-2I3DW 80.0
GTEX-13RTJ-0011-R11a-SM-5O9CK 79.9
GTEX-X4XX-0011-R11A-SM-46MWQ 79.9
GTEX-NL3H-0011-R11A-SM-2I3E6 78.8
GTEX-13NYS-0011-R11b-SM-5MR4P 78.3
GTEX-14BIM-0011-R11b-SM-5S2RN 77.2
GTEX-X4EP-0011-R11B-SM-4QASK 77.1
GTEX-13FTY-0011-R11a-SM-5IJEA 74.7
GTEX-13FHO-0011-R11b-SM-5LZYQ 72.2
GTEX-13QIC-0011-R11b-SM-5O9BU 71.8
GTEX-WHSE-0011-R11A-SM-3P5YY 71.8
GTEX-ZVT3-0011-R11b-SM-57WBI 71.8
GTEX-14BIN-0011-R11a-SM-5SI79 71.5
GTEX-RU72-0011-R11A-SM-5SI8G 71.4
GTEX-13OW8-0011-R11a-SM-5L3GT 70.7
GTEX-13FHP-0011-R11b-SM-5LZXP 69.4
GTEX-13SLW-0011-R11a-SM-5SI8Q 69.0
GTEX-13SLX-0011-R11b-SM-5O9C8 68.9
GTEX-RVPV-0011-R11A-SM-2TF6F 68.9
GTEX-11GSP-0011-R11b-SM-5NQ7V 65.4
GTEX-13NZA-0011-R11b-SM-5KM4W 64.4
GTEX-145LU-0011-R11b-SM-5P9JX 64.4
GTEX-11WQC-0011-R11b-SM-57WD6 61.0
GTEX-13CZV-0011-R11b-SM-5N9FN 53.0
GTEX-XMD1-0011-R11A-SM-4AT5J 52.9
GTEX-NPJ7-0011-R11A-SM-2I3E8 52.0
GTEX-13JVG-0011-R11a-SM-5KM53 51.1
GTEX-NPJ8-0011-R11A-SM-2YUMS 48.7
GTEX-13PLJ-0011-R11b-SM-5O9BS 46.6
GTEX-12WSB-0011-R11b-SM-57WBJ 41.0
GTEX-OHPN-0011-R11A-SM-2I5FM 40.6
GTEX-13OVJ-0011-R11a-SM-5P9H8 37.4
GTEX-13PVQ-0011-R11a-SM-5O9DU 34.3
GTEX-131XW-0011-R11a-SM-5DUV9 33.4
GTEX-ZF28-0011-R11a-SM-4WWEI 33.1
GTEX-139UW-0011-R11a-SM-5IJGN 31.0
GTEX-145MI-0011-R11a-SM-5P9JZ 24.8
Show all
 

Brain - Cerebellum

Brain - Cerebellum
RPKM: 84.4
Samples: 125

Max RPKM: 176.5
Min RPKM: 35.6
Std RPKM: 19.9
Median RPKM: 83.6
GTEX-11OF3-3126-SM-5GU5E 176.5
GTEX-PVOW-2626-SM-32PL8 136.6
GTEX-S7SE-2526-SM-2XCDL 135.5
GTEX-T2IS-2926-SM-32QPO 128.7
GTEX-WHSE-2926-SM-3NMBG 128.0
GTEX-RNOR-2226-SM-2TF5O 117.6
GTEX-145MH-2926-SM-5Q5D2 117.0
GTEX-1313W-3026-SM-5LZUZ 115.7
GTEX-14DAQ-3026-SM-5S2QZ 114.1
GTEX-11ZUS-2826-SM-5EQKW 106.6
GTEX-ZUA1-2926-SM-59HL3 106.2
GTEX-WZTO-2826-SM-3NM8P 105.4
GTEX-13112-2926-SM-5DUWT 103.7
GTEX-13VXU-3026-SM-5LU3K 103.2
GTEX-12WSE-2926-SM-5RQJ9 102.7
GTEX-T6MN-2526-SM-32PMN 102.3
GTEX-139TT-2626-SM-5LZUB 101.7
GTEX-145LS-3026-SM-5O99S 101.3
GTEX-14ASI-2926-SM-5Q5DG 101.1
GTEX-111FC-3326-SM-5GZYV 99.9
GTEX-14E7W-2926-SM-5S2R8 99.8
GTEX-131XH-2926-SM-5LZU4 98.9
GTEX-12WSC-2926-SM-5BC5Z 98.4
GTEX-11NV4-2226-SM-5BC4T 98.0
GTEX-11GSO-3026-SM-5Q5AL 97.9
GTEX-P44H-2426-SM-2XCEJ 97.7
GTEX-11DXY-3126-SM-5N9BT 97.4
GTEX-12126-0926-SM-5FQTW 97.4
GTEX-13OVH-2926-SM-5IJFH 97.3
GTEX-T5JC-2326-SM-32PMR 95.7
GTEX-QVJO-1325-SM-2S1QX 94.7
GTEX-117XS-3126-SM-5GIDP 94.6
GTEX-WL46-2826-SM-3LK81 94.4
GTEX-12ZZY-2926-SM-5DUXO 94.3
GTEX-13X6K-2826-SM-5O9DS 92.6
GTEX-12ZZX-2826-SM-5BC6K 92.5
GTEX-Y8DK-0726-SM-4TT3S 92.1
GTEX-13OVL-3026-SM-5IJF1 91.6
GTEX-N7MS-2526-SM-2D7W3 91.6
GTEX-131YS-3026-SM-5EGHY 91.5
GTEX-11DYG-2926-SM-5H132 91.4
GTEX-R55E-2526-SM-2TC6H 91.3
GTEX-13X6I-2926-SM-5Q5C3 90.9
GTEX-14C5O-2926-SM-5RQI1 90.3
GTEX-QMR6-1326-SM-32PLB 89.3
GTEX-WVLH-2926-SM-3MJG5 88.9
GTEX-144GL-2926-SM-5O99F 88.6
GTEX-13FXS-3026-SM-5LZYO 88.4
GTEX-13O3O-3026-SM-5KM42 88.0
GTEX-145LU-2626-SM-5LU9Z 87.4
GTEX-TSE9-2926-SM-3DB77 87.4
GTEX-12ZZZ-3126-SM-5LZU6 86.9
GTEX-1399T-3126-SM-5IJFS 86.4
GTEX-11NUK-3026-SM-5986K 85.6
GTEX-12WSH-3126-SM-5LZW8 85.5
GTEX-11O72-2826-SM-5HL6W 84.9
GTEX-Z93S-2826-SM-57WBL 84.8
GTEX-11DXW-1026-SM-5H11K 84.7
GTEX-UTHO-2926-SM-3P5Z9 84.3
GTEX-ZAB4-2926-SM-57WCV 84.2
GTEX-13FHO-2926-SM-5L3ES 83.9
GTEX-13OW5-3126-SM-5MR3Y 83.9
GTEX-WWYW-3026-SM-3NB36 83.6
GTEX-13QIC-3026-SM-5LU58 83.4
GTEX-147F4-3026-SM-5Q5BJ 83.3
GTEX-XLM4-2926-SM-4AT59 83.3
GTEX-11ONC-3026-SM-5985W 83.2
GTEX-ZYY3-3026-SM-5GIEJ 83.1
GTEX-QVUS-2926-SM-3GIJB 82.4
GTEX-13G51-3126-SM-5IJG7 82.2
GTEX-13S7M-3026-SM-5S2QQ 81.8
GTEX-YJ89-2926-SM-5P9IT 81.8
GTEX-11ZVC-3026-SM-59HJM 81.7
GTEX-14A5I-2826-SM-5SIBF 81.0
GTEX-RU72-2926-SM-2TF66 80.7
GTEX-12WSM-2126-SM-5GCOC 80.5
GTEX-13NYB-3226-SM-5J2ND 80.3
GTEX-1192X-3226-SM-5987D 79.7
GTEX-Y111-2826-SM-4TT3O 79.6
GTEX-11TTK-2826-SM-5GU5K 78.9
GTEX-14BIM-3126-SM-5Q5C7 78.4
GTEX-13CF2-3026-SM-5IFFX 78.1
GTEX-X4XX-2926-SM-3NMB1 77.6
GTEX-QDT8-3026-SM-32PKB 76.6
GTEX-13FHP-2926-SM-5IJG9 76.4
GTEX-13O3Q-3026-SM-5IJGD 75.5
GTEX-11PRG-2826-SM-5BC54 75.1
GTEX-13OW8-2926-SM-5L3FV 75.0
GTEX-ZYFD-2926-SM-5GID9 74.8
GTEX-12WSD-3026-SM-5LZU7 74.5
GTEX-11EMC-3326-SM-5P9JH 73.9
GTEX-139TS-3126-SM-5LZWX 73.8
GTEX-Q2AG-2826-SM-2HMJQ 73.4
GTEX-ZAK1-2926-SM-5HL9S 72.9
GTEX-XOTO-2926-SM-4B65G 71.7
GTEX-145MG-3126-SM-5Q5D3 71.6
GTEX-X4EP-3026-SM-3P5YP 71.3
GTEX-13RTJ-3126-SM-5S2Q4 71.0
GTEX-ZAJG-3026-SM-5HL92 70.5
GTEX-14BIN-3326-SM-5Q5E6 70.1
GTEX-13N2G-3126-SM-5IJGL 69.5
GTEX-13JUV-3026-SM-5K7WX 69.1
GTEX-1128S-2826-SM-5N9DI 68.9
GTEX-NPJ7-2826-SM-2I3FU 68.4
GTEX-YFC4-3026-SM-5IFJK 66.5
GTEX-132Q8-2926-SM-5IFFP 66.4
GTEX-R55F-1226-SM-2TF59 66.1
GTEX-13OW6-2926-SM-5KM29 65.2
GTEX-X261-3126-SM-4PQZC 65.0
GTEX-11GSP-3126-SM-5A5LL 64.9
GTEX-11ZTS-3226-SM-5EGID 64.4
GTEX-N7MT-1226-SM-2D7W4 63.4
GTEX-ZZPT-2926-SM-5EQ5S 62.2
GTEX-13OW7-2926-SM-5MR3Z 62.1
GTEX-ZVT3-2926-SM-5GU6M 60.7
GTEX-12WSB-3026-SM-59HKM 59.5
GTEX-PWO3-1026-SM-2I5F2 59.3
GTEX-11DZ1-2926-SM-5A5KI 57.1
GTEX-XMD1-2826-SM-4AT5F 56.4
GTEX-11EI6-2926-SM-5985U 51.8
GTEX-13JVG-3226-SM-5IJGJ 46.4
GTEX-1269C-3126-SM-5EGI6 45.3
GTEX-NPJ8-2626-SM-2D7W2 40.7
GTEX-13PVQ-2926-SM-5L3HJ 36.4
GTEX-13OVJ-2726-SM-5IJG6 35.6
Show all

CEREBELLUM - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

214.1

FANTOM5 sample id

Sample description

Tags Per Million

Cerebellum
Tags Per Million: 214.1
FF:10083-102B2 22-68 years, mixed 238.0
FF:10166-103B4 76 years, female 190.2

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