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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 111.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 139.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 119.0
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 161.0
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 113.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 122.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 110.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 129.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 174.5
Min RPKM: 7.7
Std RPKM: 16.9
Median RPKM: 33.5
GTEX-13N11-0926-SM-5IJG2
174.5
GTEX-Y5LM-0426-SM-4VBRO
83.1
GTEX-1497J-0726-SM-5Q5D1
68.8
GTEX-YB5E-0326-SM-5IFHU
64.8
GTEX-13SLX-1226-SM-5S2Q6
64.3
GTEX-S32W-1926-SM-4AD63
62.0
GTEX-13FTW-1126-SM-5J2NV
57.5
GTEX-11EQ9-0526-SM-5A5JZ
56.3
GTEX-14C38-1526-SM-5RQJ7
52.5
GTEX-QESD-2026-SM-447BI
50.8
GTEX-R53T-0326-SM-48FEC
50.8
GTEX-RTLS-1326-SM-46MUN
47.9
GTEX-UPIC-0926-SM-4IHLV
47.5
GTEX-12WSG-0626-SM-5FQTQ
46.6
GTEX-14AS3-0126-SM-5Q5F4
46.4
GTEX-WFON-1726-SM-4LVMQ
46.4
GTEX-145MF-0826-SM-5QGQA
45.6
GTEX-QEL4-1226-SM-447A4
45.6
GTEX-S4Z8-0526-SM-4AD4T
45.4
GTEX-13113-1326-SM-5GCOI
44.9
GTEX-13NZ9-1326-SM-5MR3V
44.7
GTEX-1399T-0826-SM-5IFES
43.4
GTEX-P78B-1326-SM-3P611
43.4
GTEX-ZYY3-0626-SM-5NQ6W
43.3
GTEX-ZTPG-1426-SM-51MT3
42.6
GTEX-OOBJ-0826-SM-3NB2K
42.5
GTEX-ZAB5-0426-SM-5CVMI
42.5
GTEX-139TS-1426-SM-5IFJD
42.4
GTEX-ZVP2-0626-SM-51MSO
42.1
GTEX-X4EP-1026-SM-4QAS5
41.5
GTEX-RM2N-1926-SM-48FCU
41.1
GTEX-13FLV-0326-SM-5N9DJ
40.9
GTEX-U3ZN-0226-SM-3DB8D
40.4
GTEX-REY6-1226-SM-48FDR
39.8
GTEX-Q734-0326-SM-48U15
39.6
GTEX-1399R-1226-SM-5P9GF
39.4
GTEX-PX3G-0826-SM-48TZS
39.2
GTEX-146FH-1526-SM-5NQBU
39.0
GTEX-ZF2S-3026-SM-4WWCH
38.0
GTEX-ZZPU-0426-SM-5GZYH
37.6
GTEX-139YR-0226-SM-5IFEM
37.5
GTEX-QDVN-0826-SM-48TZ2
37.4
GTEX-11OF3-0726-SM-5BC4Z
36.9
GTEX-ZVT3-1626-SM-5GU66
36.9
GTEX-XOTO-0826-SM-4B65O
36.7
GTEX-13OW6-2626-SM-5IFF2
36.6
GTEX-147F4-1426-SM-5LUA8
36.2
GTEX-QV44-0326-SM-4R1KD
36.1
GTEX-ZF29-2026-SM-4WWB7
36.1
GTEX-147JS-1126-SM-5RQIW
36.0
GTEX-RU72-1426-SM-46MUF
35.9
GTEX-12KS4-1326-SM-5LUB3
35.7
GTEX-145MO-2326-SM-5NQ9K
35.7
GTEX-12WSI-0226-SM-5GCNA
35.3
GTEX-T6MN-1226-SM-3NMA5
35.3
GTEX-139TU-0826-SM-5IJFG
35.1
GTEX-13FTZ-0726-SM-5IFFY
34.9
GTEX-12WSM-0726-SM-5GCOW
34.5
GTEX-13NYB-1026-SM-5IFH3
33.9
GTEX-12WSD-1426-SM-5GCN9
33.5
GTEX-11DXZ-0126-SM-5EGGY
32.7
GTEX-14DAQ-1726-SM-5S2R2
32.7
GTEX-11WQC-0726-SM-5EQMR
32.5
GTEX-ZPU1-0826-SM-57WG2
32.5
GTEX-12696-0826-SM-5EGGE
32.4
GTEX-12WSL-0226-SM-5CVMJ
32.4
GTEX-X4EO-1126-SM-4QARQ
32.2
GTEX-Y5V5-0926-SM-4VBPZ
32.2
GTEX-14753-1626-SM-5NQ9L
32.1
GTEX-YECK-1926-SM-4W21H
32.1
GTEX-1269C-0626-SM-5FQSS
31.9
GTEX-SJXC-1226-SM-4DM78
31.7
GTEX-132NY-0926-SM-5P9G3
31.5
GTEX-QEG4-1826-SM-4R1JN
31.3
GTEX-WYVS-1926-SM-4PQZ2
31.2
GTEX-14E1K-0326-SM-5S2PE
31.1
GTEX-UTHO-2426-SM-4JBHD
31.1
GTEX-14A5I-1726-SM-5QGQ5
31.0
GTEX-WQUQ-1926-SM-4OOSA
31.0
GTEX-13PVR-0126-SM-5S2PY
30.8
GTEX-Z9EW-0426-SM-5CVM9
30.3
GTEX-UPK5-1426-SM-4JBHH
30.1
GTEX-11NV4-1326-SM-5HL6V
29.5
GTEX-1212Z-0226-SM-59HLF
29.0
GTEX-131XE-0326-SM-5LZVO
28.4
GTEX-13VXU-0926-SM-5IFFH
28.2
GTEX-X3Y1-2726-SM-4PQZH
28.1
GTEX-S33H-1626-SM-4AD68
27.7
GTEX-TKQ2-1726-SM-4DXUP
27.7
GTEX-ZVT4-0626-SM-5E45T
27.7
GTEX-ZAB4-0826-SM-5LU9D
27.4
GTEX-11ZVC-0726-SM-5FQT9
27.2
GTEX-ZYT6-0626-SM-5E45V
27.1
GTEX-13112-1426-SM-5EGH8
26.5
GTEX-131XH-0626-SM-5LZWH
26.5
GTEX-RWSA-1426-SM-47JXA
26.5
GTEX-VUSG-0126-SM-4KL1X
26.5
GTEX-X261-1726-SM-4PQYT
26.2
GTEX-144GM-1326-SM-5LU5E
26.1
GTEX-13N2G-0926-SM-5IFGJ
25.9
GTEX-YEC4-0826-SM-5P9FV
24.9
GTEX-131YS-1626-SM-5HL6C
24.5
GTEX-11NUK-1226-SM-5P9GM
24.4
GTEX-13QJC-0726-SM-5RQJK
24.3
GTEX-YFC4-1526-SM-5IFJS
24.0
GTEX-11ZTS-1426-SM-5EQMM
23.3
GTEX-X4XY-1626-SM-46MVN
23.1
GTEX-11DXY-0526-SM-5EGGQ
22.8
GTEX-13O3O-1826-SM-5IFGW
22.8
GTEX-XBEC-1526-SM-4AT68
22.4
GTEX-RN64-1826-SM-48FDV
21.2
GTEX-RNOR-1426-SM-48FDJ
20.6
GTEX-WZTO-0626-SM-4PQYY
20.5
GTEX-145LU-1326-SM-5LU9N
20.0
GTEX-Q2AG-1126-SM-48U1P
19.8
GTEX-11GSP-0626-SM-5986T
18.0
GTEX-13NZB-0626-SM-5IFH6
17.7
GTEX-11ZUS-2526-SM-59872
17.5
GTEX-12ZZZ-1326-SM-59HKW
7.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.