We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
MDH1
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA OVARY

GENE/PROTEIN

Antibody validation


Dictionary

Ovary

Tissue proteome

Ovary

OVARY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:86.5TPM
GTEx:26.7RPKM
FANTOM5:70.7Tags Per Million

OVARY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Follicle cells:Low
Ovarian stroma cells:Not detected
 
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA027296

 

Antibody HPA054276

 

Antibody CAB047333

 

Follicle cells

Low   Medium  

Ovarian stroma cells

Not detected   Low   Not detected  
        
     
     
     

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

86.5

overview Female, age 64
Sample 1
TPM: 84.2
Cell types%
Stromal cells: 70
Smooth muscle cells: 15
Other cell types: 15
overview Female, age 52
Sample 2
TPM: 75.1
Cell types%
Stromal cells: 95
Other cell types: 5
overview Female, age 80
Sample 3
TPM: 100.2
Cell types%
Stromal cells: 70
Smooth muscle cells: 25
Other cell types: 5

OVARY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

26.7

GTEx sample id

RPKM

 

Ovary

Ovary
RPKM: 26.7
Samples: 97

Max RPKM: 36.6
Min RPKM: 18.1
Std RPKM: 3.8
Median RPKM: 26.4
GTEX-Y3IK-2026-SM-4YCDG 36.6
GTEX-XYKS-1726-SM-4E3IO 35.3
GTEX-12WSJ-1226-SM-5LU91 34.6
GTEX-XV7Q-1426-SM-4BRWA 34.0
GTEX-11ZTS-1926-SM-5CVLA 33.8
GTEX-ZPIC-1426-SM-4WWCP 33.0
GTEX-11DXX-1426-SM-5GIDU 32.9
GTEX-W5WG-0926-SM-4RTX9 32.9
GTEX-13FTX-0926-SM-5IFF7 31.6
GTEX-OHPK-2426-SM-3MJGH 31.5
GTEX-TML8-0926-SM-4DXSJ 31.5
GTEX-WWYW-2726-SM-4MVOP 31.2
GTEX-133LE-1226-SM-5IFGC 31.2
GTEX-T5JW-0426-SM-4DM7M 31.1
GTEX-QCQG-1426-SM-48U22 31.0
GTEX-132AR-1426-SM-5IFF1 30.9
GTEX-ZP4G-0626-SM-4WWF1 30.6
GTEX-ZYWO-1926-SM-5E456 30.6
GTEX-X15G-1726-SM-4PQZN 30.5
GTEX-P78B-1926-SM-3P616 30.2
GTEX-ZYFG-1726-SM-5GZZB 30.2
GTEX-P4QT-2426-SM-3NMCL 29.9
GTEX-146FH-2526-SM-5Q5BP 29.9
GTEX-13VXT-1526-SM-5LU3J 29.6
GTEX-145ME-1226-SM-5SIB6 29.1
GTEX-S341-0726-SM-4AD5R 28.8
GTEX-11ZTT-1826-SM-5CVLN 28.6
GTEX-S32W-1226-SM-4AD67 28.5
GTEX-ZZPU-2126-SM-5EGIU 28.4
GTEX-1313W-2726-SM-5P9IX 28.2
GTEX-13QIC-1526-SM-5IJFL 28.1
GTEX-ZVT3-2626-SM-5GU5L 28.1
GTEX-RU72-2226-SM-46MUE 27.7
GTEX-S4P3-0926-SM-4AD54 27.6
GTEX-13X6H-1026-SM-5SIBE 27.6
GTEX-14AS3-1326-SM-5RQJE 27.5
GTEX-PX3G-2426-SM-48TZZ 27.3
GTEX-RWS6-1026-SM-47JXD 27.2
GTEX-11P81-1526-SM-5P9GS 27.1
GTEX-11EMC-1726-SM-5H11P 27.0
GTEX-XMD3-2326-SM-4AT5H 26.9
GTEX-1269C-1826-SM-5N9E1 26.9
GTEX-12WSD-2726-SM-59HLR 26.9
GTEX-Q734-0726-SM-48TZP 26.7
GTEX-XUJ4-1326-SM-4BOQ9 26.6
GTEX-13W3W-1526-SM-5LU5I 26.6
GTEX-YJ8O-1026-SM-5CVM5 26.6
GTEX-PWCY-1326-SM-48TCU 26.4
GTEX-11EM3-1726-SM-5N9D1 26.4
GTEX-11GSP-0226-SM-5A5KV 26.4
GTEX-11VI4-1026-SM-5EQM1 26.1
GTEX-POMQ-1426-SM-3P61D 26.0
GTEX-T2IS-2026-SM-4DM6W 26.0
GTEX-RTLS-2326-SM-46MUH 26.0
GTEX-13D11-1126-SM-5KLYS 25.9
GTEX-RU1J-0826-SM-46MUU 25.9
GTEX-U3ZN-1026-SM-4DXTC 25.8
GTEX-13U4I-2126-SM-5LU55 25.5
GTEX-1399S-2126-SM-5J2MH 25.5
GTEX-T6MO-1126-SM-4DM5D 25.5
GTEX-13N11-0526-SM-5IJFI 25.4
GTEX-XUZC-1026-SM-4BOPY 25.3
GTEX-11ZVC-1426-SM-5EGGA 25.1
GTEX-12WSK-1926-SM-5LZVK 25.1
GTEX-YFC4-2726-SM-5IFJW 25.0
GTEX-TSE9-2226-SM-4DXUR 24.9
GTEX-PWN1-2426-SM-48TDD 24.8
GTEX-UJHI-1226-SM-4IHLR 24.8
GTEX-13PL7-2326-SM-5L3FY 24.7
GTEX-S7SF-1326-SM-4AD4P 24.6
GTEX-13O3O-2726-SM-5KM35 24.5
GTEX-12ZZX-2026-SM-5LZV9 24.5
GTEX-ZLWG-0926-SM-4WWC3 24.3
GTEX-P4PP-2426-SM-3P61L 24.2
GTEX-13OVI-0726-SM-5L3DD 24.1
GTEX-X4EO-2426-SM-4QASD 24.1
GTEX-13QBU-1526-SM-5LU3W 24.0
GTEX-QVJO-3126-SM-4R1KC 23.7
GTEX-131YS-2226-SM-5P9G8 23.6
GTEX-11I78-1926-SM-59878 23.4
GTEX-13PVR-1226-SM-5RQJ2 23.3
GTEX-ZVT2-0326-SM-5E44G 23.1
GTEX-TMMY-1726-SM-4DXTD 23.0
GTEX-13OVJ-2426-SM-5KM3I 23.0
GTEX-ZC5H-2026-SM-5CVN2 22.9
GTEX-Y114-1726-SM-4TT7U 22.7
GTEX-XUW1-0126-SM-4BOOQ 22.4
GTEX-OHPL-2426-SM-48TDN 22.0
GTEX-ZAJG-2726-SM-5S2MU 21.6
GTEX-WI4N-2526-SM-4OOSE 21.5
GTEX-X8HC-2726-SM-46MUA 20.2
GTEX-139D8-2426-SM-5KM3A 19.8
GTEX-11XUK-1626-SM-5GU5O 19.7
GTEX-ZYY3-2726-SM-5EGH4 19.2
GTEX-12WSG-1426-SM-5FQUK 18.7
GTEX-PLZ4-2826-SM-3P617 18.3
GTEX-12WSB-2226-SM-5GCOS 18.1
Show all

OVARY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

70.7

FANTOM5 sample id

Sample description

Tags Per Million

Ovary
Tags Per Million: 70.7
FF:10020-101D2 47,75,84 years, female 70.7

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.