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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 36.6
Min RPKM: 18.1
Std RPKM: 3.8
Median RPKM: 26.4
GTEX-Y3IK-2026-SM-4YCDG
36.6
GTEX-XYKS-1726-SM-4E3IO
35.3
GTEX-12WSJ-1226-SM-5LU91
34.6
GTEX-XV7Q-1426-SM-4BRWA
34.0
GTEX-11ZTS-1926-SM-5CVLA
33.8
GTEX-ZPIC-1426-SM-4WWCP
33.0
GTEX-11DXX-1426-SM-5GIDU
32.9
GTEX-W5WG-0926-SM-4RTX9
32.9
GTEX-13FTX-0926-SM-5IFF7
31.6
GTEX-OHPK-2426-SM-3MJGH
31.5
GTEX-TML8-0926-SM-4DXSJ
31.5
GTEX-WWYW-2726-SM-4MVOP
31.2
GTEX-133LE-1226-SM-5IFGC
31.2
GTEX-T5JW-0426-SM-4DM7M
31.1
GTEX-QCQG-1426-SM-48U22
31.0
GTEX-132AR-1426-SM-5IFF1
30.9
GTEX-ZP4G-0626-SM-4WWF1
30.6
GTEX-ZYWO-1926-SM-5E456
30.6
GTEX-X15G-1726-SM-4PQZN
30.5
GTEX-P78B-1926-SM-3P616
30.2
GTEX-ZYFG-1726-SM-5GZZB
30.2
GTEX-P4QT-2426-SM-3NMCL
29.9
GTEX-146FH-2526-SM-5Q5BP
29.9
GTEX-13VXT-1526-SM-5LU3J
29.6
GTEX-145ME-1226-SM-5SIB6
29.1
GTEX-S341-0726-SM-4AD5R
28.8
GTEX-11ZTT-1826-SM-5CVLN
28.6
GTEX-S32W-1226-SM-4AD67
28.5
GTEX-ZZPU-2126-SM-5EGIU
28.4
GTEX-1313W-2726-SM-5P9IX
28.2
GTEX-13QIC-1526-SM-5IJFL
28.1
GTEX-ZVT3-2626-SM-5GU5L
28.1
GTEX-RU72-2226-SM-46MUE
27.7
GTEX-S4P3-0926-SM-4AD54
27.6
GTEX-13X6H-1026-SM-5SIBE
27.6
GTEX-14AS3-1326-SM-5RQJE
27.5
GTEX-PX3G-2426-SM-48TZZ
27.3
GTEX-RWS6-1026-SM-47JXD
27.2
GTEX-11P81-1526-SM-5P9GS
27.1
GTEX-11EMC-1726-SM-5H11P
27.0
GTEX-XMD3-2326-SM-4AT5H
26.9
GTEX-1269C-1826-SM-5N9E1
26.9
GTEX-12WSD-2726-SM-59HLR
26.9
GTEX-Q734-0726-SM-48TZP
26.7
GTEX-XUJ4-1326-SM-4BOQ9
26.6
GTEX-13W3W-1526-SM-5LU5I
26.6
GTEX-YJ8O-1026-SM-5CVM5
26.6
GTEX-PWCY-1326-SM-48TCU
26.4
GTEX-11EM3-1726-SM-5N9D1
26.4
GTEX-11GSP-0226-SM-5A5KV
26.4
GTEX-11VI4-1026-SM-5EQM1
26.1
GTEX-POMQ-1426-SM-3P61D
26.0
GTEX-T2IS-2026-SM-4DM6W
26.0
GTEX-RTLS-2326-SM-46MUH
26.0
GTEX-13D11-1126-SM-5KLYS
25.9
GTEX-RU1J-0826-SM-46MUU
25.9
GTEX-U3ZN-1026-SM-4DXTC
25.8
GTEX-13U4I-2126-SM-5LU55
25.5
GTEX-1399S-2126-SM-5J2MH
25.5
GTEX-T6MO-1126-SM-4DM5D
25.5
GTEX-13N11-0526-SM-5IJFI
25.4
GTEX-XUZC-1026-SM-4BOPY
25.3
GTEX-11ZVC-1426-SM-5EGGA
25.1
GTEX-12WSK-1926-SM-5LZVK
25.1
GTEX-YFC4-2726-SM-5IFJW
25.0
GTEX-TSE9-2226-SM-4DXUR
24.9
GTEX-PWN1-2426-SM-48TDD
24.8
GTEX-UJHI-1226-SM-4IHLR
24.8
GTEX-13PL7-2326-SM-5L3FY
24.7
GTEX-S7SF-1326-SM-4AD4P
24.6
GTEX-13O3O-2726-SM-5KM35
24.5
GTEX-12ZZX-2026-SM-5LZV9
24.5
GTEX-ZLWG-0926-SM-4WWC3
24.3
GTEX-P4PP-2426-SM-3P61L
24.2
GTEX-13OVI-0726-SM-5L3DD
24.1
GTEX-X4EO-2426-SM-4QASD
24.1
GTEX-13QBU-1526-SM-5LU3W
24.0
GTEX-QVJO-3126-SM-4R1KC
23.7
GTEX-131YS-2226-SM-5P9G8
23.6
GTEX-11I78-1926-SM-59878
23.4
GTEX-13PVR-1226-SM-5RQJ2
23.3
GTEX-ZVT2-0326-SM-5E44G
23.1
GTEX-TMMY-1726-SM-4DXTD
23.0
GTEX-13OVJ-2426-SM-5KM3I
23.0
GTEX-ZC5H-2026-SM-5CVN2
22.9
GTEX-Y114-1726-SM-4TT7U
22.7
GTEX-XUW1-0126-SM-4BOOQ
22.4
GTEX-OHPL-2426-SM-48TDN
22.0
GTEX-ZAJG-2726-SM-5S2MU
21.6
GTEX-WI4N-2526-SM-4OOSE
21.5
GTEX-X8HC-2726-SM-46MUA
20.2
GTEX-139D8-2426-SM-5KM3A
19.8
GTEX-11XUK-1626-SM-5GU5O
19.7
GTEX-ZYY3-2726-SM-5EGH4
19.2
GTEX-12WSG-1426-SM-5FQUK
18.7
GTEX-PLZ4-2826-SM-3P617
18.3
GTEX-12WSB-2226-SM-5GCOS
18.1
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OVARY - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.