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TISSUE ATLAS PRIMARY DATA VAGINA

GENE/PROTEIN

Antibody validation


Dictionary

Vagina

VAGINA - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:31.7RPKM
FANTOM5:29.7Tags Per Million

VAGINA - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Squamous epithelial cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA027296

 

Antibody HPA054276

 

Antibody CAB047333

 

Squamous epithelial cells

Not detected   Low   Not detected  
     
     
     

VAGINA - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


VAGINA - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

31.7

GTEx sample id

RPKM

 

Vagina

Vagina
RPKM: 31.7
Samples: 96

Max RPKM: 55.9
Min RPKM: 18.4
Std RPKM: 6.9
Median RPKM: 30.4
GTEX-Y114-1926-SM-4TT8J 55.9
GTEX-13D11-1326-SM-5IJFY 46.0
GTEX-OHPL-2526-SM-3MJGT 45.3
GTEX-12WSJ-1326-SM-5GCOB 45.3
GTEX-X15G-1926-SM-4PQZQ 44.9
GTEX-11DXX-1726-SM-5H11T 44.5
GTEX-QCQG-1226-SM-48U23 44.0
GTEX-XV7Q-1626-SM-4BRWC 43.5
GTEX-ZGAY-2226-SM-4YCCX 43.4
GTEX-11VI4-0726-SM-5GU5B 43.1
GTEX-ZQG8-1126-SM-51MRL 41.8
GTEX-ZP4G-0826-SM-4WWF3 39.7
GTEX-ZVT2-0626-SM-5GICR 39.7
GTEX-146FH-2626-SM-5Q5E1 39.6
GTEX-RU1J-1426-SM-46MUV 39.5
GTEX-WEY5-0826-SM-4LMIH 39.2
GTEX-S7SF-1426-SM-4AT5A 38.5
GTEX-PWOO-2026-SM-48TDE 37.4
GTEX-Y8LW-1426-SM-5RQJJ 37.0
GTEX-ZYWO-2026-SM-5GIDA 36.9
GTEX-PX3G-2526-SM-48TZV 36.4
GTEX-13N11-1526-SM-5L3FL 36.4
GTEX-OHPK-2526-SM-3MJH9 35.9
GTEX-13W3W-2326-SM-5LU4Y 35.9
GTEX-ZLWG-1126-SM-4WWFQ 35.6
GTEX-ZE7O-2426-SM-57WD7 35.5
GTEX-S341-1226-SM-4AD5S 35.4
GTEX-Y3IK-2226-SM-4YCD4 34.7
GTEX-13PVR-1426-SM-5S2PW 34.6
GTEX-XUW1-0326-SM-4BOOR 34.4
GTEX-QVJO-2526-SM-4R1KB 33.8
GTEX-ZZPU-2226-SM-5EGIV 33.8
GTEX-TMMY-1926-SM-4DXUU 33.2
GTEX-1399U-1526-SM-5J2N7 32.9
GTEX-XUJ4-1626-SM-4BONV 32.8
GTEX-Q734-1426-SM-48TZQ 32.8
GTEX-UJHI-1326-SM-4IHJO 32.7
GTEX-146FR-2426-SM-5NQAU 32.6
GTEX-SE5C-1126-SM-4BRWZ 32.2
GTEX-147F3-1526-SM-5SIAK 32.2
GTEX-ZTPG-2226-SM-57WF9 32.1
GTEX-11EMC-1926-SM-5A5JU 31.9
GTEX-ZYVF-0326-SM-5GIES 31.8
GTEX-W5WG-1026-SM-4LMIF 31.5
GTEX-ZV6S-1326-SM-59HJA 31.4
GTEX-145ME-1426-SM-5RQJS 30.9
GTEX-RWS6-1726-SM-47JXP 30.7
GTEX-1399S-2326-SM-5K7YV 30.5
GTEX-12WSD-2926-SM-5LZUH 30.4
GTEX-11EM3-1826-SM-5A5KO 30.3
GTEX-PWCY-1726-SM-48TD3 30.2
GTEX-NL3G-2526-SM-4SOIE 30.2
GTEX-13U4I-2026-SM-5LU3L 29.9
GTEX-11I78-2026-SM-5987C 29.8
GTEX-13QBU-1726-SM-5IJFQ 29.7
GTEX-N7MT-1926-SM-3LK5N 29.5
GTEX-1117F-2526-SM-5GZY6 29.3
GTEX-ZAJG-2926-SM-5HL8P 29.2
GTEX-12WSB-2426-SM-5EGJC 29.1
GTEX-S4UY-1326-SM-4AD4X 29.0
GTEX-14BMU-1926-SM-5S2QC 28.8
GTEX-11XUK-1326-SM-5EQM4 28.6
GTEX-ZYY3-2626-SM-5N9DH 28.5
GTEX-P78B-2226-SM-3P5ZZ 28.3
GTEX-11P81-2126-SM-5HL6N 28.0
GTEX-11GSP-2226-SM-5HL5Q 27.9
GTEX-TML8-1126-SM-4DXSS 27.8
GTEX-14A5I-2726-SM-5SIB3 27.3
GTEX-U3ZN-0926-SM-4DXTU 27.1
GTEX-X8HC-2826-SM-46MWJ 27.1
GTEX-131XG-2126-SM-5DUXG 26.9
GTEX-131YS-2426-SM-5J2OD 26.8
GTEX-13PL7-2726-SM-5L3GB 26.5
GTEX-UPIC-1426-SM-4IHLQ 26.4
GTEX-14DAQ-2326-SM-5S2QX 26.4
GTEX-QDT8-2526-SM-48TYX 26.3
GTEX-T6MO-1226-SM-4DM5S 26.2
GTEX-ZC5H-2226-SM-4WAWS 26.0
GTEX-TSE9-2526-SM-4DXUS 26.0
GTEX-YFC4-2926-SM-5IFJ8 25.6
GTEX-13QIC-1826-SM-5J1MY 25.4
GTEX-12ZZX-1926-SM-5EGKC 25.3
GTEX-T2IS-1926-SM-4DM74 25.0
GTEX-WRHU-2926-SM-4MVNQ 24.7
GTEX-S4P3-1126-SM-4AD52 24.5
GTEX-P4PP-2526-SM-3P61P 24.4
GTEX-PWN1-2526-SM-48TDS 24.1
GTEX-YJ8O-1226-SM-5P9JE 23.7
GTEX-13OVI-0926-SM-5J1MI 23.5
GTEX-ZXES-0626-SM-5E45P 22.5
GTEX-132AR-1626-SM-5EGHP 21.8
GTEX-11TTK-2726-SM-5GU58 20.8
GTEX-ZVT3-2726-SM-5GU5X 20.0
GTEX-PLZ4-2726-SM-3P61A 19.8
GTEX-113JC-1926-SM-5N9GE 18.7
GTEX-14AS3-1726-SM-5RQJV 18.4
Show all

VAGINA - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

29.7

FANTOM5 sample id

Sample description

Tags Per Million

Vagina
Tags Per Million: 29.7
FF:10204-103F6 68 years, female 29.7

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