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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 55.9
Min RPKM: 18.4
Std RPKM: 6.9
Median RPKM: 30.4
GTEX-Y114-1926-SM-4TT8J
55.9
GTEX-13D11-1326-SM-5IJFY
46.0
GTEX-OHPL-2526-SM-3MJGT
45.3
GTEX-12WSJ-1326-SM-5GCOB
45.3
GTEX-X15G-1926-SM-4PQZQ
44.9
GTEX-11DXX-1726-SM-5H11T
44.5
GTEX-QCQG-1226-SM-48U23
44.0
GTEX-XV7Q-1626-SM-4BRWC
43.5
GTEX-ZGAY-2226-SM-4YCCX
43.4
GTEX-11VI4-0726-SM-5GU5B
43.1
GTEX-ZQG8-1126-SM-51MRL
41.8
GTEX-ZP4G-0826-SM-4WWF3
39.7
GTEX-ZVT2-0626-SM-5GICR
39.7
GTEX-146FH-2626-SM-5Q5E1
39.6
GTEX-RU1J-1426-SM-46MUV
39.5
GTEX-WEY5-0826-SM-4LMIH
39.2
GTEX-S7SF-1426-SM-4AT5A
38.5
GTEX-PWOO-2026-SM-48TDE
37.4
GTEX-Y8LW-1426-SM-5RQJJ
37.0
GTEX-ZYWO-2026-SM-5GIDA
36.9
GTEX-PX3G-2526-SM-48TZV
36.4
GTEX-13N11-1526-SM-5L3FL
36.4
GTEX-OHPK-2526-SM-3MJH9
35.9
GTEX-13W3W-2326-SM-5LU4Y
35.9
GTEX-ZLWG-1126-SM-4WWFQ
35.6
GTEX-ZE7O-2426-SM-57WD7
35.5
GTEX-S341-1226-SM-4AD5S
35.4
GTEX-Y3IK-2226-SM-4YCD4
34.7
GTEX-13PVR-1426-SM-5S2PW
34.6
GTEX-XUW1-0326-SM-4BOOR
34.4
GTEX-QVJO-2526-SM-4R1KB
33.8
GTEX-ZZPU-2226-SM-5EGIV
33.8
GTEX-TMMY-1926-SM-4DXUU
33.2
GTEX-1399U-1526-SM-5J2N7
32.9
GTEX-XUJ4-1626-SM-4BONV
32.8
GTEX-Q734-1426-SM-48TZQ
32.8
GTEX-UJHI-1326-SM-4IHJO
32.7
GTEX-146FR-2426-SM-5NQAU
32.6
GTEX-SE5C-1126-SM-4BRWZ
32.2
GTEX-147F3-1526-SM-5SIAK
32.2
GTEX-ZTPG-2226-SM-57WF9
32.1
GTEX-11EMC-1926-SM-5A5JU
31.9
GTEX-ZYVF-0326-SM-5GIES
31.8
GTEX-W5WG-1026-SM-4LMIF
31.5
GTEX-ZV6S-1326-SM-59HJA
31.4
GTEX-145ME-1426-SM-5RQJS
30.9
GTEX-RWS6-1726-SM-47JXP
30.7
GTEX-1399S-2326-SM-5K7YV
30.5
GTEX-12WSD-2926-SM-5LZUH
30.4
GTEX-11EM3-1826-SM-5A5KO
30.3
GTEX-PWCY-1726-SM-48TD3
30.2
GTEX-NL3G-2526-SM-4SOIE
30.2
GTEX-13U4I-2026-SM-5LU3L
29.9
GTEX-11I78-2026-SM-5987C
29.8
GTEX-13QBU-1726-SM-5IJFQ
29.7
GTEX-N7MT-1926-SM-3LK5N
29.5
GTEX-1117F-2526-SM-5GZY6
29.3
GTEX-ZAJG-2926-SM-5HL8P
29.2
GTEX-12WSB-2426-SM-5EGJC
29.1
GTEX-S4UY-1326-SM-4AD4X
29.0
GTEX-14BMU-1926-SM-5S2QC
28.8
GTEX-11XUK-1326-SM-5EQM4
28.6
GTEX-ZYY3-2626-SM-5N9DH
28.5
GTEX-P78B-2226-SM-3P5ZZ
28.3
GTEX-11P81-2126-SM-5HL6N
28.0
GTEX-11GSP-2226-SM-5HL5Q
27.9
GTEX-TML8-1126-SM-4DXSS
27.8
GTEX-14A5I-2726-SM-5SIB3
27.3
GTEX-U3ZN-0926-SM-4DXTU
27.1
GTEX-X8HC-2826-SM-46MWJ
27.1
GTEX-131XG-2126-SM-5DUXG
26.9
GTEX-131YS-2426-SM-5J2OD
26.8
GTEX-13PL7-2726-SM-5L3GB
26.5
GTEX-UPIC-1426-SM-4IHLQ
26.4
GTEX-14DAQ-2326-SM-5S2QX
26.4
GTEX-QDT8-2526-SM-48TYX
26.3
GTEX-T6MO-1226-SM-4DM5S
26.2
GTEX-ZC5H-2226-SM-4WAWS
26.0
GTEX-TSE9-2526-SM-4DXUS
26.0
GTEX-YFC4-2926-SM-5IFJ8
25.6
GTEX-13QIC-1826-SM-5J1MY
25.4
GTEX-12ZZX-1926-SM-5EGKC
25.3
GTEX-T2IS-1926-SM-4DM74
25.0
GTEX-WRHU-2926-SM-4MVNQ
24.7
GTEX-S4P3-1126-SM-4AD52
24.5
GTEX-P4PP-2526-SM-3P61P
24.4
GTEX-PWN1-2526-SM-48TDS
24.1
GTEX-YJ8O-1226-SM-5P9JE
23.7
GTEX-13OVI-0926-SM-5J1MI
23.5
GTEX-ZXES-0626-SM-5E45P
22.5
GTEX-132AR-1626-SM-5EGHP
21.8
GTEX-11TTK-2726-SM-5GU58
20.8
GTEX-ZVT3-2726-SM-5GU5X
20.0
GTEX-PLZ4-2726-SM-3P61A
19.8
GTEX-113JC-1926-SM-5N9GE
18.7
GTEX-14AS3-1726-SM-5RQJV
18.4
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.