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TISSUE ATLAS PRIMARY DATA STOMACH 1

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:22057.0TPM
GTEx:24260.6RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA031717

 

Antibody HPA031718

 

Glandular cells

High   High  
   
   
   

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA031717

 

Antibody HPA031718

 

Glandular cells

High   High  
   
   
   

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

22057.0

overview Female, age 33
Sample 1
TPM: 19097.0
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82
Sample 2
TPM: 30095.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71
Sample 3
TPM: 12217.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66
Sample 4
TPM: 26818.0
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

24260.6

GTEx sample id

RPKM

 

Stomach

Stomach
RPKM: 24260.6
Samples: 193

Max RPKM: 104807.3
Min RPKM: 0
Std RPKM: 22174.3
Median RPKM: 20557.3
GTEX-12WSG-2026-SM-5FQUU 104807.3
GTEX-ZPU1-1626-SM-4WWB2 101533.0
GTEX-ZAB4-1526-SM-5CVN7 100192.5
GTEX-11GSP-2126-SM-5HL5E 74391.9
GTEX-ZT9W-1526-SM-4YCDE 70532.0
GTEX-RM2N-0826-SM-48FD3 69691.5
GTEX-O5YW-1526-SM-3MJGL 66920.1
GTEX-PX3G-1526-SM-48U11 66755.3
GTEX-ZVZP-1726-SM-5GZWY 66525.1
GTEX-OXRK-1626-SM-3NB17 62938.7
GTEX-ZVT2-1626-SM-51MRC 62165.5
GTEX-YFCO-0826-SM-5LUAG 61582.5
GTEX-ZZ64-0426-SM-5E43F 60220.8
GTEX-13OW6-2526-SM-5IJEC 59042.4
GTEX-12696-1726-SM-5EQLH 58702.0
GTEX-117YW-2226-SM-5N9DB 58205.1
GTEX-WRHK-0626-SM-4MVOE 58192.8
GTEX-Q734-1026-SM-48U16 58156.6
GTEX-111CU-0926-SM-5EGIK 57502.4
GTEX-1399R-1126-SM-5IFIO 56014.2
GTEX-QV44-1226-SM-4R1KE 55725.5
GTEX-U3ZN-2026-SM-4DXUC 54145.7
GTEX-11NSD-1426-SM-5HL67 54094.2
GTEX-14BMU-1126-SM-5RQJ8 53282.5
GTEX-Q2AI-0826-SM-48TZO 52258.9
GTEX-QLQW-0726-SM-447AA 49738.5
GTEX-UJMC-1226-SM-4IHLI 49563.8
GTEX-PWCY-0926-SM-48TD7 47947.4
GTEX-ZDYS-1926-SM-5HL59 46947.4
GTEX-ZP4G-1226-SM-4WWCJ 46813.2
GTEX-V955-1326-SM-4JBHR 45855.9
GTEX-W5WG-1726-SM-4LMI5 45075.2
GTEX-WEY5-1226-SM-4LMIQ 45038.4
GTEX-YJ8A-1526-SM-5P9FT 44595.4
GTEX-PWN1-1526-SM-48TDA 44131.9
GTEX-WFG7-1326-SM-4LMK1 42936.6
GTEX-13FTW-1726-SM-5KM2B 42739.9
GTEX-X15G-1126-SM-4PQZG 42715.5
GTEX-Y5LM-1326-SM-5RQIS 42486.3
GTEX-13O21-0926-SM-5IFGT 42427.3
GTEX-QLQ7-0826-SM-447B3 41774.2
GTEX-WHWD-1426-SM-4OORU 41285.7
GTEX-139YR-1926-SM-5LZXM 40133.8
GTEX-13QBU-1126-SM-5LU44 39939.6
GTEX-XUJ4-1226-SM-4BOPD 39699.4
GTEX-SUCS-0926-SM-4DM4Z 38242.4
GTEX-111YS-1126-SM-5GZYQ 38150.4
GTEX-PW2O-1226-SM-48TCH 36918.1
GTEX-1122O-1926-SM-5EGIQ 36621.1
GTEX-13D11-2126-SM-5IFH2 36619.3
GTEX-ZV7C-1626-SM-5NQ7E 36571.0
GTEX-ZYFG-1326-SM-5GICJ 35660.5
GTEX-R53T-1226-SM-48FCT 35521.3
GTEX-144GN-1226-SM-5O991 34956.0
GTEX-131XG-1226-SM-5EGH9 34912.8
GTEX-13CF3-1926-SM-5K7WF 34822.7
GTEX-QV31-0626-SM-447C5 33891.1
GTEX-ZQUD-0826-SM-57WDQ 33665.8
GTEX-S3XE-1026-SM-4AD4O 33332.8
GTEX-145LT-1426-SM-5O9B3 33102.3
GTEX-S4Q7-0726-SM-4AD5F 33005.3
GTEX-145MN-1326-SM-5NQ9S 32921.7
GTEX-12BJ1-1726-SM-5HL9B 32765.7
GTEX-SNOS-0826-SM-4DM5N 32732.8
GTEX-PWOO-1226-SM-48TCO 32528.4
GTEX-13FTX-0726-SM-5N9BI 32065.7
GTEX-ZLFU-1326-SM-4WWET 31417.3
GTEX-XBED-1226-SM-4AT5V 31006.6
GTEX-XUZC-0726-SM-4BOPH 30966.8
GTEX-12WSK-1426-SM-5CVNN 30569.8
GTEX-131XF-1226-SM-5HL8V 30368.8
GTEX-Y5V6-1326-SM-4VDTF 30328.2
GTEX-ZA64-0826-SM-5HL9U 30031.9
GTEX-133LE-1326-SM-5IFGO 29867.3
GTEX-SNMC-0626-SM-4DM6H 29538.6
GTEX-OOBJ-1526-SM-3NB1Q 28868.3
GTEX-XXEK-0826-SM-4BRWG 28828.5
GTEX-QMRM-1126-SM-447BN 28602.2
GTEX-11TT1-0726-SM-5GU5A 27641.4
GTEX-P4PP-1526-SM-3P61M 26697.1
GTEX-QXCU-1926-SM-48FE4 26611.6
GTEX-11I78-1726-SM-5A5M3 26234.4
GTEX-Q2AH-1126-SM-48TZM 26056.8
GTEX-U4B1-1026-SM-4DXT1 25436.7
GTEX-144GM-1726-SM-5O9AS 24907.1
GTEX-NFK9-1526-SM-3LK7B 24734.1
GTEX-T5JW-0926-SM-4DM5K 24691.5
GTEX-ZY6K-0726-SM-5A5L8 24677.8
GTEX-13FH7-1026-SM-5IJGF 24604.4
GTEX-QDVJ-1426-SM-48U1Y 23962.7
GTEX-TMMY-1626-SM-4DXTY 23520.4
GTEX-ZZPU-1426-SM-5GZZ6 23162.2
GTEX-T6MO-0726-SM-4DM58 22299.7
GTEX-YEC4-1426-SM-5IFHS 22054.5
GTEX-132QS-1826-SM-5IFFN 21791.1
GTEX-13U4I-2526-SM-5SI8Z 21387.2
GTEX-P78B-1826-SM-3P5YX 20557.3
GTEX-Y3I4-1626-SM-4TT7W 19953.9
GTEX-S95S-0826-SM-4B64N 19915.8
GTEX-RWS6-0926-SM-47JXE 19597.4
GTEX-QDVN-1226-SM-48TZ5 19181.7
GTEX-XQ8I-2026-SM-4BOOL 19078.5
GTEX-11EM3-1026-SM-5A5KL 17806.1
GTEX-OHPK-1526-SM-3MJGM 17349.1
GTEX-Y8LW-0826-SM-4WWDO 17265.1
GTEX-145MO-2226-SM-5Q5BN 17051.3
GTEX-117YX-1026-SM-5H11V 17012.2
GTEX-V1D1-1726-SM-4JBHB 16968.9
GTEX-ZF2S-1426-SM-57WET 16346.1
GTEX-S341-0626-SM-4AD5T 16274.3
GTEX-S4UY-1626-SM-4AD55 16257.7
GTEX-139D8-2326-SM-5IFGE 15803.5
GTEX-11DXX-1326-SM-5GIDZ 15249.1
GTEX-WFON-1126-SM-4LVMA 14963.6
GTEX-ZVT3-2126-SM-59HL2 14826.5
GTEX-ZXES-1426-SM-5NQ8S 14741.9
GTEX-Y9LG-1026-SM-5IFJN 13814.5
GTEX-132AR-2426-SM-5IFFD 13600.1
GTEX-QCQG-0526-SM-48U2A 13144.8
GTEX-POMQ-0826-SM-3P61H 13035.7
GTEX-12WSD-2326-SM-59HKQ 12980.8
GTEX-13113-0726-SM-5LZUF 12823.1
GTEX-T8EM-1226-SM-4DM5J 12816.0
GTEX-Y3IK-1426-SM-4YCES 12515.7
GTEX-ZYY3-1726-SM-5EGH3 11745.6
GTEX-Y8E4-1526-SM-4WWDI 11538.3
GTEX-WFG8-1326-SM-4LVN3 11508.8
GTEX-ZLV1-0826-SM-4WWEQ 10804.6
GTEX-1399S-1626-SM-5P9GI 10800.1
GTEX-WZTO-2126-SM-4PQYW 10559.7
GTEX-ZVP2-1626-SM-5GU5D 10482.4
GTEX-VJYA-1026-SM-4KL21 10225.7
GTEX-13RTK-0226-SM-5RQHR 10044.7
GTEX-XBEW-1826-SM-4RTWX 10029.5
GTEX-XV7Q-1326-SM-4BRWM 9708.7
GTEX-145ME-1026-SM-5O9B4 9456.8
GTEX-13PVQ-2126-SM-5L3FW 8447.1
GTEX-13S7M-1826-SM-5RQK6 6968.1
GTEX-RTLS-2626-SM-46MUJ 5230.6
GTEX-WHPG-0426-SM-4M1XW 4920.4
GTEX-11NUK-2426-SM-5BC4U 4317.2
GTEX-14BMV-2226-SM-5RQHX 4098.9
GTEX-11EI6-2426-SM-5PNVS 3548.8
GTEX-SIU7-1426-SM-4BRWT 3050.8
GTEX-146FH-2126-SM-5SI9U 2291.6
GTEX-T5JC-1926-SM-4DM6Q 2068.3
GTEX-S7SF-0626-SM-4AD4V 1382.8
GTEX-U8T8-1226-SM-4E3IH 1332.2
GTEX-1211K-1426-SM-5FQTF 482.7
GTEX-11EQ9-1226-SM-5987E 308.3
GTEX-ZYVF-2726-SM-5GID4 217.4
GTEX-13QJ3-2726-SM-5SI6L 88.9
GTEX-UPK5-2126-SM-4JBJK 87.8
GTEX-13O3Q-2126-SM-5KM4C 68.7
GTEX-P4QT-1526-SM-3NMCT 47.5
GTEX-12C56-0526-SM-5FQST 21.0
GTEX-R55D-1526-SM-48FEJ 20.6
GTEX-PLZ6-0826-SM-3P61K 18.5
GTEX-13N1W-2026-SM-5K7YU 17.2
GTEX-TKQ1-0526-SM-4DXTG 16.1
GTEX-WH7G-1526-SM-4LVMX 12.6
GTEX-1399U-1626-SM-5P9J3 9.6
GTEX-11P7K-1726-SM-5GU6F 8.8
GTEX-R55C-1026-SM-48FCM 7.9
GTEX-P4PQ-1526-SM-3NMCK 7.6
GTEX-R55G-1126-SM-48FDG 6.5
GTEX-11P82-0726-SM-5PNYL 5.3
GTEX-13O61-1126-SM-5L3FI 5.2
GTEX-XAJ8-0326-SM-47JYI 5.1
GTEX-13OVI-2426-SM-5KM4J 4.7
GTEX-TKQ2-0926-SM-4DXU5 4.7
GTEX-XPVG-1526-SM-4B66C 3.9
GTEX-131XE-2226-SM-5PNYX 3.3
GTEX-OIZH-1526-SM-3NB1J 3.2
GTEX-12WSJ-0926-SM-5P9JD 2.8
GTEX-146FR-2026-SM-5NQAI 2.8
GTEX-S4P3-0726-SM-4AD57 2.8
GTEX-Y114-1226-SM-4TT88 2.6
GTEX-S4Z8-1226-SM-4AD6W 1.5
GTEX-UJHI-1026-SM-4IHJP 1.5
GTEX-ZV6S-0926-SM-57WGB 1.5
GTEX-ZTX8-0426-SM-59HLG 1.2
GTEX-UPIC-1826-SM-4IHKC 1.0
GTEX-WFJO-1126-SM-4LVLZ 0.9
GTEX-ZE7O-3026-SM-51MS4 0.7
GTEX-ZPIC-2026-SM-57WG3 0.5
GTEX-13X6H-1626-SM-5Q5CT 0.4
GTEX-13111-1226-SM-5GCNC 0.2
GTEX-YEC3-1426-101806-SM-5PNXX 0.2
GTEX-11WQK-2626-SM-5EQ4K 0.1
GTEX-1339X-1426-SM-5K7YO 0.1
GTEX-RU1J-0526-SM-46MUT 0.1
GTEX-11VI4-0326-SM-5EQ6L 0.0
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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