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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:40.6TPM
GTEx:15.1RPKM
FANTOM5:69.4Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:High
Leydig cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA039371

 

Antibody HPA040174

 

Cells in seminiferous ducts

High   High  

Leydig cells

High   High  
   
   
   

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

40.6

overview Male, age 56
Sample 1
TPM: 41.8
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 2
TPM: 36.8
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62
Sample 3
TPM: 40.4
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34
Sample 4
TPM: 33.8
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26
Sample 5
TPM: 35.6
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50
Sample 6
TPM: 42.2
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37
Sample 7
TPM: 33.6
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51
Sample 8
TPM: 58.3
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 9
TPM: 43.6
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26
Sample 10
TPM: 39.7
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

15.1

GTEx sample id

RPKM

 

Testis

Testis
RPKM: 15.1
Samples: 172

Max RPKM: 19.5
Min RPKM: 10.7
Std RPKM: 1.6
Median RPKM: 15.1
GTEX-11TT1-2226-SM-5GU6B 19.5
GTEX-O5YT-2126-SM-3MJGD 19.0
GTEX-RUSQ-2126-SM-47JXK 19.0
GTEX-SUCS-1326-SM-4DM5T 19.0
GTEX-Y8E4-2226-SM-5LU94 18.8
GTEX-111VG-1926-SM-5GIDO 18.4
GTEX-YFCO-1726-SM-4W21S 18.3
GTEX-1339X-1926-SM-5PNVP 18.2
GTEX-RM2N-1326-SM-48FCW 18.2
GTEX-14753-0626-SM-5Q5CY 18.1
GTEX-145MH-2326-SM-5O9AW 18.0
GTEX-11TUW-2226-SM-5EQL9 17.7
GTEX-Y9LG-1726-SM-4VBQE 17.7
GTEX-S7SE-0326-SM-4AT5Q 17.6
GTEX-XBED-2026-SM-4AT5D 17.6
GTEX-OXRL-2126-SM-3NM98 17.5
GTEX-132QS-1226-SM-5P9GD 17.3
GTEX-YEC4-1526-SM-4W1YU 17.3
GTEX-ZPU1-2126-SM-57WED 17.2
GTEX-11NSD-1026-SM-5N9BE 17.1
GTEX-QLQ7-1426-SM-4R1JX 17.1
GTEX-SNMC-1026-SM-4DM7K 17.0
GTEX-U3ZM-1626-SM-4DXSK 17.0
GTEX-13112-0226-SM-5P9IV 16.9
GTEX-13OW6-0126-SM-5IJGM 16.9
GTEX-147JS-0126-SM-5S2TW 16.9
GTEX-OIZH-2126-SM-3NB1P 16.9
GTEX-T8EM-0126-SM-4DM5R 16.8
GTEX-OOBJ-2126-SM-3NB1N 16.7
GTEX-XPT6-1626-SM-4B655 16.7
GTEX-P4QS-2126-SM-3NMCF 16.6
GTEX-XPVG-2226-SM-4B65U 16.6
GTEX-OHPM-2126-SM-3LK75 16.5
GTEX-T5JC-0726-SM-4DM55 16.4
GTEX-WFON-2026-SM-4LVMW 16.4
GTEX-ZA64-1626-SM-5CVME 16.3
GTEX-111CU-1726-SM-5EGHM 16.2
GTEX-13FTW-1326-SM-5LZZD 16.2
GTEX-S33H-0126-SM-4AD62 16.2
GTEX-WH7G-1926-SM-4LVMM 16.2
GTEX-ZTSS-1526-SM-51MTC 16.2
GTEX-11NV4-1726-SM-5N9FC 16.1
GTEX-ZDTT-2026-SM-5K7TY 16.1
GTEX-ZVZP-2226-SM-57WBF 16.1
GTEX-Q2AH-1526-SM-48TZG 16.0
GTEX-WVLH-2626-SM-4MVNV 16.0
GTEX-11EQ8-1426-SM-5EGJR 15.9
GTEX-U3ZH-1526-SM-4DXV1 15.9
GTEX-U4B1-1526-SM-4DXSL 15.9
GTEX-ZV7C-2026-SM-5NQ8F 15.9
GTEX-R55E-0726-SM-48FCZ 15.8
GTEX-ZYFC-0126-SM-5GIEH 15.8
GTEX-11LCK-2326-SM-5HL53 15.7
GTEX-1212Z-0326-SM-5FQSJ 15.7
GTEX-NFK9-0126-SM-3LK5H 15.7
GTEX-QMRM-1526-SM-4R1K6 15.7
GTEX-QV31-1126-SM-4R1K4 15.7
GTEX-R55C-1426-SM-48FED 15.7
GTEX-S3XE-1526-SM-4AD5A 15.7
GTEX-11ONC-2226-SM-5HL6D 15.6
GTEX-TKQ1-0926-SM-4DXU2 15.6
GTEX-U8XE-0126-SM-4E3I3 15.6
GTEX-Y5V6-1726-SM-4VDSZ 15.6
GTEX-13O61-2026-SM-5J2M6 15.5
GTEX-Q2AI-1226-SM-48U14 15.5
GTEX-V955-1926-SM-4KL1L 15.5
GTEX-13OVL-0426-SM-5IFG6 15.4
GTEX-V1D1-2126-SM-4JBH4 15.4
GTEX-ZT9W-2226-SM-57WFU 15.4
GTEX-11EI6-2226-SM-5EGJM 15.3
GTEX-13NZB-2026-SM-5MR4M 15.3
GTEX-WHSB-2126-SM-4M1XF 15.3
GTEX-XBEC-0126-SM-4GIDT 15.3
GTEX-ZUA1-2726-SM-59HLJ 15.3
GTEX-117XS-2026-SM-5GID1 15.2
GTEX-144GM-0426-SM-5Q5C8 15.2
GTEX-PLZ5-1526-SM-3P5ZX 15.2
GTEX-REY6-0126-SM-48FDT 15.2
GTEX-WOFM-1126-SM-4OOSB 15.2
GTEX-YB5E-1926-SM-5IFIG 15.2
GTEX-ZT9X-1426-SM-5DUX1 15.2
GTEX-ZTX8-1126-SM-51MRM 15.2
GTEX-131XE-0426-SM-5IJF4 15.1
GTEX-13N2G-0126-SM-5N9DV 15.1
GTEX-13O1R-0726-SM-5IJEI 15.1
GTEX-UPJH-0126-SM-4IHLL 15.1
GTEX-X5EB-2026-SM-4E3KA 15.1
GTEX-11P82-1526-SM-5BC5M 15.0
GTEX-RN64-2326-SM-48FDW 15.0
GTEX-S95S-1126-SM-4B64E 15.0
GTEX-13111-1526-SM-5EGJX 14.9
GTEX-QLQW-1026-SM-447A9 14.9
GTEX-XLM4-1526-SM-4AT6D 14.8
GTEX-ZDYS-1326-SM-5IJFF 14.8
GTEX-12ZZY-0126-SM-5LZV2 14.7
GTEX-13FHP-2826-SM-5IJFW 14.7
GTEX-145MO-0126-SM-5S2QU 14.7
GTEX-Y111-2426-SM-4TT23 14.7
GTEX-11DXZ-2126-SM-59881 14.6
GTEX-12WSI-2126-SM-5GCMV 14.6
GTEX-139T6-1226-SM-5IFFC 14.6
GTEX-13NYB-2226-SM-5MR58 14.6
GTEX-14ABY-0626-SM-5Q5C9 14.6
GTEX-S4Q7-1226-SM-4AD5I 14.6
GTEX-XGQ4-2026-SM-4AT6G 14.6
GTEX-XMK1-2026-SM-4B65K 14.6
GTEX-XQ3S-2726-SM-4BOP2 14.6
GTEX-YJ89-0626-SM-4TT3Z 14.6
GTEX-111YS-2026-SM-5EGGL 14.5
GTEX-11EQ9-1926-SM-5PNVV 14.5
GTEX-11WQC-2326-SM-5EQKE 14.5
GTEX-13N1W-2626-SM-5IJEP 14.5
GTEX-13O21-1226-SM-5J2MK 14.5
GTEX-X3Y1-2626-SM-4PQZI 14.5
GTEX-12696-0226-SM-5EGL3 14.4
GTEX-12C56-1426-SM-5FQSW 14.4
GTEX-13OW5-2526-SM-5L3I1 14.4
GTEX-144GN-1626-SM-5Q5BU 14.4
GTEX-11WQK-2826-SM-5EQKH 14.3
GTEX-139TS-1726-SM-5IJG5 14.3
GTEX-13NZA-2526-SM-5IJFX 14.3
GTEX-14A6H-2326-SM-5Q5B5 14.3
GTEX-N7MS-0126-SM-3TW8O 14.3
GTEX-OIZI-0126-SM-3NB13 14.3
GTEX-SNOS-1126-SM-4DM67 14.3
GTEX-ZVTK-0126-SM-57WDG 14.3
GTEX-TKQ2-1526-SM-4DXUN 14.2
GTEX-WZTO-0326-SM-4PQYZ 14.2
GTEX-ZAB5-2426-SM-5CVMW 14.2
GTEX-ZZ64-1126-SM-5GZXY 14.2
GTEX-P4QR-0226-SM-3NMCH 14.1
GTEX-WFG8-1926-SM-4LVM1 14.1
GTEX-ZYT6-2726-SM-5GICP 14.1
GTEX-11GS4-2026-SM-5N9CP 14.0
GTEX-12WSL-2326-SM-5DUXQ 14.0
GTEX-13VXU-0726-SM-5J2O7 14.0
GTEX-X261-2326-SM-4PQYU 14.0
GTEX-1399R-1626-SM-5P9GG 13.9
GTEX-144GL-0726-SM-5LU4P 13.9
GTEX-11NUK-2626-SM-5A5MB 13.8
GTEX-139TT-2226-SM-5LZWO 13.8
GTEX-13OVH-0726-SM-5N9BU 13.8
GTEX-R55D-0126-SM-48FEL 13.8
GTEX-11OF3-1826-SM-5987N 13.7
GTEX-YEC3-1726-SM-5IFIK 13.7
GTEX-YF7O-2026-SM-4W1YE 13.7
GTEX-145LT-0426-SM-5LUAP 13.6
GTEX-S7PM-0626-SM-4AD4Q 13.6
GTEX-OOBK-2126-SM-3LK5T 13.5
GTEX-QEG5-0126-SM-4R1JR 13.5
GTEX-QV44-1726-SM-4R1KG 13.5
GTEX-ZQUD-2026-SM-51MSM 13.5
GTEX-U8T8-1126-SM-4DXUE 13.4
GTEX-WK11-0326-SM-4OOS6 13.3
GTEX-11ZUS-2726-SM-5FQUA 13.2
GTEX-117YW-1526-SM-5EGGP 13.1
GTEX-QEG4-0126-SM-48TZE 13.1
GTEX-12WSH-0326-SM-5GCNH 13.0
GTEX-VJYA-1426-SM-4KL1Y 13.0
GTEX-13FLW-2126-SM-5N9FD 12.8
GTEX-PW2O-1426-SM-48TCD 12.8
GTEX-XAJ8-1326-SM-47JYT 12.8
GTEX-11P7K-1026-SM-5HL6Y 12.6
GTEX-T6MN-2026-SM-4DM7L 12.6
GTEX-111FC-1926-SM-5GZYC 12.5
GTEX-12WSM-1326-SM-5GCP9 12.2
GTEX-RWSA-2426-SM-47JXR 12.1
GTEX-Z93S-1726-SM-5HL8G 11.9
GTEX-ZAB4-0126-SM-5CVMG 11.9
GTEX-11O72-0726-SM-5P9GO 11.8
GTEX-1399Q-2826-SM-5IJEZ 11.2
GTEX-147F4-0626-SM-5LUAK 10.7
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

69.4

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 69.4
FF:10096-102C6 14-64 years, male 84.8
FF:10026-101D8 34,53,86 years, male 54.0

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