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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 36.8
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 40.4
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 33.8
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 35.6
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 42.2
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 33.6
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 58.3
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 43.6
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 39.7
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 19.5
Min RPKM: 10.7
Std RPKM: 1.6
Median RPKM: 15.1
GTEX-11TT1-2226-SM-5GU6B
19.5
GTEX-O5YT-2126-SM-3MJGD
19.0
GTEX-RUSQ-2126-SM-47JXK
19.0
GTEX-SUCS-1326-SM-4DM5T
19.0
GTEX-Y8E4-2226-SM-5LU94
18.8
GTEX-111VG-1926-SM-5GIDO
18.4
GTEX-YFCO-1726-SM-4W21S
18.3
GTEX-1339X-1926-SM-5PNVP
18.2
GTEX-RM2N-1326-SM-48FCW
18.2
GTEX-14753-0626-SM-5Q5CY
18.1
GTEX-145MH-2326-SM-5O9AW
18.0
GTEX-11TUW-2226-SM-5EQL9
17.7
GTEX-Y9LG-1726-SM-4VBQE
17.7
GTEX-S7SE-0326-SM-4AT5Q
17.6
GTEX-XBED-2026-SM-4AT5D
17.6
GTEX-OXRL-2126-SM-3NM98
17.5
GTEX-132QS-1226-SM-5P9GD
17.3
GTEX-YEC4-1526-SM-4W1YU
17.3
GTEX-ZPU1-2126-SM-57WED
17.2
GTEX-11NSD-1026-SM-5N9BE
17.1
GTEX-QLQ7-1426-SM-4R1JX
17.1
GTEX-SNMC-1026-SM-4DM7K
17.0
GTEX-U3ZM-1626-SM-4DXSK
17.0
GTEX-13112-0226-SM-5P9IV
16.9
GTEX-13OW6-0126-SM-5IJGM
16.9
GTEX-147JS-0126-SM-5S2TW
16.9
GTEX-OIZH-2126-SM-3NB1P
16.9
GTEX-T8EM-0126-SM-4DM5R
16.8
GTEX-OOBJ-2126-SM-3NB1N
16.7
GTEX-XPT6-1626-SM-4B655
16.7
GTEX-P4QS-2126-SM-3NMCF
16.6
GTEX-XPVG-2226-SM-4B65U
16.6
GTEX-OHPM-2126-SM-3LK75
16.5
GTEX-T5JC-0726-SM-4DM55
16.4
GTEX-WFON-2026-SM-4LVMW
16.4
GTEX-ZA64-1626-SM-5CVME
16.3
GTEX-111CU-1726-SM-5EGHM
16.2
GTEX-13FTW-1326-SM-5LZZD
16.2
GTEX-S33H-0126-SM-4AD62
16.2
GTEX-WH7G-1926-SM-4LVMM
16.2
GTEX-ZTSS-1526-SM-51MTC
16.2
GTEX-11NV4-1726-SM-5N9FC
16.1
GTEX-ZDTT-2026-SM-5K7TY
16.1
GTEX-ZVZP-2226-SM-57WBF
16.1
GTEX-Q2AH-1526-SM-48TZG
16.0
GTEX-WVLH-2626-SM-4MVNV
16.0
GTEX-11EQ8-1426-SM-5EGJR
15.9
GTEX-U3ZH-1526-SM-4DXV1
15.9
GTEX-U4B1-1526-SM-4DXSL
15.9
GTEX-ZV7C-2026-SM-5NQ8F
15.9
GTEX-R55E-0726-SM-48FCZ
15.8
GTEX-ZYFC-0126-SM-5GIEH
15.8
GTEX-11LCK-2326-SM-5HL53
15.7
GTEX-1212Z-0326-SM-5FQSJ
15.7
GTEX-NFK9-0126-SM-3LK5H
15.7
GTEX-QMRM-1526-SM-4R1K6
15.7
GTEX-QV31-1126-SM-4R1K4
15.7
GTEX-R55C-1426-SM-48FED
15.7
GTEX-S3XE-1526-SM-4AD5A
15.7
GTEX-11ONC-2226-SM-5HL6D
15.6
GTEX-TKQ1-0926-SM-4DXU2
15.6
GTEX-U8XE-0126-SM-4E3I3
15.6
GTEX-Y5V6-1726-SM-4VDSZ
15.6
GTEX-13O61-2026-SM-5J2M6
15.5
GTEX-Q2AI-1226-SM-48U14
15.5
GTEX-V955-1926-SM-4KL1L
15.5
GTEX-13OVL-0426-SM-5IFG6
15.4
GTEX-V1D1-2126-SM-4JBH4
15.4
GTEX-ZT9W-2226-SM-57WFU
15.4
GTEX-11EI6-2226-SM-5EGJM
15.3
GTEX-13NZB-2026-SM-5MR4M
15.3
GTEX-WHSB-2126-SM-4M1XF
15.3
GTEX-XBEC-0126-SM-4GIDT
15.3
GTEX-ZUA1-2726-SM-59HLJ
15.3
GTEX-117XS-2026-SM-5GID1
15.2
GTEX-144GM-0426-SM-5Q5C8
15.2
GTEX-PLZ5-1526-SM-3P5ZX
15.2
GTEX-REY6-0126-SM-48FDT
15.2
GTEX-WOFM-1126-SM-4OOSB
15.2
GTEX-YB5E-1926-SM-5IFIG
15.2
GTEX-ZT9X-1426-SM-5DUX1
15.2
GTEX-ZTX8-1126-SM-51MRM
15.2
GTEX-131XE-0426-SM-5IJF4
15.1
GTEX-13N2G-0126-SM-5N9DV
15.1
GTEX-13O1R-0726-SM-5IJEI
15.1
GTEX-UPJH-0126-SM-4IHLL
15.1
GTEX-X5EB-2026-SM-4E3KA
15.1
GTEX-11P82-1526-SM-5BC5M
15.0
GTEX-RN64-2326-SM-48FDW
15.0
GTEX-S95S-1126-SM-4B64E
15.0
GTEX-13111-1526-SM-5EGJX
14.9
GTEX-QLQW-1026-SM-447A9
14.9
GTEX-XLM4-1526-SM-4AT6D
14.8
GTEX-ZDYS-1326-SM-5IJFF
14.8
GTEX-12ZZY-0126-SM-5LZV2
14.7
GTEX-13FHP-2826-SM-5IJFW
14.7
GTEX-145MO-0126-SM-5S2QU
14.7
GTEX-Y111-2426-SM-4TT23
14.7
GTEX-11DXZ-2126-SM-59881
14.6
GTEX-12WSI-2126-SM-5GCMV
14.6
GTEX-139T6-1226-SM-5IFFC
14.6
GTEX-13NYB-2226-SM-5MR58
14.6
GTEX-14ABY-0626-SM-5Q5C9
14.6
GTEX-S4Q7-1226-SM-4AD5I
14.6
GTEX-XGQ4-2026-SM-4AT6G
14.6
GTEX-XMK1-2026-SM-4B65K
14.6
GTEX-XQ3S-2726-SM-4BOP2
14.6
GTEX-YJ89-0626-SM-4TT3Z
14.6
GTEX-111YS-2026-SM-5EGGL
14.5
GTEX-11EQ9-1926-SM-5PNVV
14.5
GTEX-11WQC-2326-SM-5EQKE
14.5
GTEX-13N1W-2626-SM-5IJEP
14.5
GTEX-13O21-1226-SM-5J2MK
14.5
GTEX-X3Y1-2626-SM-4PQZI
14.5
GTEX-12696-0226-SM-5EGL3
14.4
GTEX-12C56-1426-SM-5FQSW
14.4
GTEX-13OW5-2526-SM-5L3I1
14.4
GTEX-144GN-1626-SM-5Q5BU
14.4
GTEX-11WQK-2826-SM-5EQKH
14.3
GTEX-139TS-1726-SM-5IJG5
14.3
GTEX-13NZA-2526-SM-5IJFX
14.3
GTEX-14A6H-2326-SM-5Q5B5
14.3
GTEX-N7MS-0126-SM-3TW8O
14.3
GTEX-OIZI-0126-SM-3NB13
14.3
GTEX-SNOS-1126-SM-4DM67
14.3
GTEX-ZVTK-0126-SM-57WDG
14.3
GTEX-TKQ2-1526-SM-4DXUN
14.2
GTEX-WZTO-0326-SM-4PQYZ
14.2
GTEX-ZAB5-2426-SM-5CVMW
14.2
GTEX-ZZ64-1126-SM-5GZXY
14.2
GTEX-P4QR-0226-SM-3NMCH
14.1
GTEX-WFG8-1926-SM-4LVM1
14.1
GTEX-ZYT6-2726-SM-5GICP
14.1
GTEX-11GS4-2026-SM-5N9CP
14.0
GTEX-12WSL-2326-SM-5DUXQ
14.0
GTEX-13VXU-0726-SM-5J2O7
14.0
GTEX-X261-2326-SM-4PQYU
14.0
GTEX-1399R-1626-SM-5P9GG
13.9
GTEX-144GL-0726-SM-5LU4P
13.9
GTEX-11NUK-2626-SM-5A5MB
13.8
GTEX-139TT-2226-SM-5LZWO
13.8
GTEX-13OVH-0726-SM-5N9BU
13.8
GTEX-R55D-0126-SM-48FEL
13.8
GTEX-11OF3-1826-SM-5987N
13.7
GTEX-YEC3-1726-SM-5IFIK
13.7
GTEX-YF7O-2026-SM-4W1YE
13.7
GTEX-145LT-0426-SM-5LUAP
13.6
GTEX-S7PM-0626-SM-4AD4Q
13.6
GTEX-OOBK-2126-SM-3LK5T
13.5
GTEX-QEG5-0126-SM-4R1JR
13.5
GTEX-QV44-1726-SM-4R1KG
13.5
GTEX-ZQUD-2026-SM-51MSM
13.5
GTEX-U8T8-1126-SM-4DXUE
13.4
GTEX-WK11-0326-SM-4OOS6
13.3
GTEX-11ZUS-2726-SM-5FQUA
13.2
GTEX-117YW-1526-SM-5EGGP
13.1
GTEX-QEG4-0126-SM-48TZE
13.1
GTEX-12WSH-0326-SM-5GCNH
13.0
GTEX-VJYA-1426-SM-4KL1Y
13.0
GTEX-13FLW-2126-SM-5N9FD
12.8
GTEX-PW2O-1426-SM-48TCD
12.8
GTEX-XAJ8-1326-SM-47JYT
12.8
GTEX-11P7K-1026-SM-5HL6Y
12.6
GTEX-T6MN-2026-SM-4DM7L
12.6
GTEX-111FC-1926-SM-5GZYC
12.5
GTEX-12WSM-1326-SM-5GCP9
12.2
GTEX-RWSA-2426-SM-47JXR
12.1
GTEX-Z93S-1726-SM-5HL8G
11.9
GTEX-ZAB4-0126-SM-5CVMG
11.9
GTEX-11O72-0726-SM-5P9GO
11.8
GTEX-1399Q-2826-SM-5IJEZ
11.2
GTEX-147F4-0626-SM-5LUAK
10.7
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.