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TISSUE ATLAS PRIMARY DATA CEREBELLUM

GENE/PROTEIN

Antibody validation


Dictionary

Cerebellum

CEREBELLUM - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:26.0RPKM
FANTOM5:72.5Tags Per Million

CEREBELLUM - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in granular layer:Medium
Cells in molecular layer:Not detected
Purkinje cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB016680

 

Cells in granular layer

Medium  

Cells in molecular layer

Not detected  

Purkinje cells

Medium  
 
 
 

CEREBELLUM - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


CEREBELLUM - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

26.0

GTEx sample id

RPKM

 

Brain - Cerebellar Hemisphere

Brain - Cerebellar Hemisphere
RPKM: 28.6
Samples: 105

Max RPKM: 40.6
Min RPKM: 16.7
Std RPKM: 4.3
Median RPKM: 28.3
GTEX-12WSH-0011-R11a-SM-5LZVM 40.6
GTEX-12126-0011-R11a-SM-5BC6X 38.7
GTEX-P44H-0011-R11A-SM-2XCER 36.8
GTEX-T6MN-0011-R11A-SM-32QOX 36.6
GTEX-WWYW-0011-R11A-SM-3NB38 36.0
GTEX-12WSC-0011-R11a-SM-5GU5J 35.6
GTEX-QDT8-0011-R11A-SM-32PKD 35.6
GTEX-NL3H-0011-R11A-SM-2I3E6 34.7
GTEX-13X6K-0011-R11a-SM-5P9F5 34.4
GTEX-YJ89-0011-R11a-SM-4SOKA 34.1
GTEX-13OW7-0011-R11a-SM-5O9DY 33.9
GTEX-ZDXO-0011-R11a-SM-4WWD9 33.9
GTEX-144GL-0011-R11b-SM-5P9F6 33.4
GTEX-ZVZQ-0011-R11a-SM-51MS6 33.4
GTEX-UTHO-0011-R11A-SM-3GIJE 33.2
GTEX-WVLH-0011-R11A-SM-3MJFO 33.2
GTEX-QMR6-0011-R11A-SM-32PKK 33.0
GTEX-Y8DK-0011-R11A-SM-4SOK2 33.0
GTEX-11ZUS-0011-R11b-SM-5BC7B 32.8
GTEX-13FTY-0011-R11a-SM-5IJEA 32.6
GTEX-NL4W-0011-R11A-SM-2I3DW 32.3
GTEX-1399T-0011-R11a-SM-5J2O1 32.2
GTEX-R55E-0011-R11A-SM-2TC6I 32.1
GTEX-S7SE-0011-R11A-SM-2XCDD 32.1
GTEX-T2IS-0011-R11A-SM-32QPC 32.0
GTEX-13O3O-0011-R11b-SM-5KM4G 31.8
GTEX-12WSI-0011-R11b-SM-5P9EZ 31.7
GTEX-13X6J-0011-R11a-SM-5P9HE 31.6
GTEX-WL46-0011-R11A-SM-3MJFT 31.4
GTEX-ZE7O-0011-R11a-SM-57WBC 31.4
GTEX-14ABY-0011-R11a-SM-5SI7C 31.3
GTEX-Q2AG-0011-R11A-SM-2HMKZ 30.5
GTEX-YFC4-0011-R11a-SM-4SOK6 30.5
GTEX-TSE9-0011-R11A-SM-3DB7N 30.1
GTEX-11H98-0011-R11b-SM-5NQ6U 30.0
GTEX-13JUV-0011-R11a-SM-5LZYH 29.9
GTEX-13G51-0011-R11b-SM-5J2NE 29.8
GTEX-13CF2-0011-R11b-SM-5LZXO 29.6
GTEX-13S7M-0011-R11b-SM-5P9HU 29.5
GTEX-ZUA1-0011-R11b-SM-51MTI 29.5
GTEX-13FXS-0011-R11a-SM-5L3DM 29.4
GTEX-145MH-0011-R11a-SM-5P9HQ 29.4
GTEX-X4XX-0011-R11A-SM-46MWQ 29.4
GTEX-13SLW-0011-R11a-SM-5SI8Q 29.3
GTEX-12WSM-0011-R11a-SM-5DUX8 29.2
GTEX-131XH-0011-R11a-SM-5EGLN 29.2
GTEX-13OW8-0011-R11a-SM-5L3GT 29.2
GTEX-139TT-0011-R11b-SM-5LZV1 29.1
GTEX-13FHO-0011-R11b-SM-5LZYQ 29.1
GTEX-13O3Q-0011-R11b-SM-5KM2W 29.1
GTEX-1313W-0011-R11a-SM-5DUXN 28.5
GTEX-X4EP-0011-R11B-SM-4QASK 28.4
GTEX-145LU-0011-R11b-SM-5P9JX 28.3
GTEX-11WQC-0011-R11b-SM-57WD6 28.2
GTEX-13OVL-0011-R11b-SM-5L3G7 28.2
GTEX-N7MS-0011-R11A-SM-2HMJS 28.2
GTEX-ZAB4-0011-R11a-SM-4SOKI 28.2
GTEX-13OW6-0011-R11a-SM-5L3H2 28.1
GTEX-13RTJ-0011-R11a-SM-5O9CK 28.1
GTEX-13VXU-0011-R11b-SM-5O9DJ 28.1
GTEX-T5JC-0011-R11A-SM-32PMB 27.9
GTEX-12WSF-0011-R11a-SM-5LZVT 27.7
GTEX-12ZZZ-0011-R11a-SM-5EGLC 27.7
GTEX-13NZA-0011-R11b-SM-5KM4W 27.7
GTEX-WHSE-0011-R11A-SM-3P5YY 27.7
GTEX-X585-0011-R11B-SM-46MUZ 27.6
GTEX-RU72-0011-R11A-SM-5SI8G 27.5
GTEX-Z93S-0011-R11a-SM-4RGNN 27.5
GTEX-XOTO-0011-R11B-SM-4B64O 27.4
GTEX-13SLX-0011-R11b-SM-5O9C8 27.2
GTEX-13NYS-0011-R11b-SM-5MR4P 26.9
GTEX-12WSE-0011-R11b-SM-5P9JW 26.7
GTEX-13OVJ-0011-R11a-SM-5P9H8 26.7
GTEX-11GSP-0011-R11b-SM-5NQ7V 26.6
GTEX-12ZZX-0011-R11a-SM-5DUVJ 26.3
GTEX-14BIN-0011-R11a-SM-5SI79 26.3
GTEX-13JVG-0011-R11a-SM-5KM53 26.2
GTEX-13OVH-0011-R11b-SM-5KM4X 26.2
GTEX-WZTO-0011-R11A-SM-4E3K9 26.2
GTEX-RVPV-0011-R11A-SM-2TF6F 26.1
GTEX-ZVT3-0011-R11b-SM-57WBI 26.1
GTEX-132Q8-0011-R11b-SM-5DUW9 25.9
GTEX-13N2G-0011-R11a-SM-5MR3F 25.9
GTEX-13OW5-0011-R11b-SM-5L3GG 25.8
GTEX-11OF3-0011-R11a-SM-57WCR 25.6
GTEX-13FHP-0011-R11b-SM-5LZXP 25.5
GTEX-131YS-0011-R11b-SM-5EGLM 25.4
GTEX-13QIC-0011-R11b-SM-5O9BU 25.3
GTEX-13X6I-0011-R11a-SM-5P9HN 25.2
GTEX-NPJ7-0011-R11A-SM-2I3E8 25.1
GTEX-13NYB-0011-R11a-SM-5KM3Q 24.5
GTEX-14BIM-0011-R11b-SM-5S2RN 24.4
GTEX-13FLV-0011-R11a-SM-5LZZ7 24.3
GTEX-NPJ8-0011-R11A-SM-2YUMS 24.3
GTEX-X261-0011-R11A-SM-4E3JY 24.1
GTEX-13PVQ-0011-R11a-SM-5O9DU 23.9
GTEX-13CZV-0011-R11b-SM-5N9FN 23.6
GTEX-13PLJ-0011-R11b-SM-5O9BS 21.7
GTEX-12WSB-0011-R11b-SM-57WBJ 20.8
GTEX-145MI-0011-R11a-SM-5P9JZ 20.7
GTEX-OHPN-0011-R11A-SM-2I5FM 19.5
GTEX-ZF28-0011-R11a-SM-4WWEI 19.0
GTEX-131XW-0011-R11a-SM-5DUV9 17.7
GTEX-XMD1-0011-R11A-SM-4AT5J 17.3
GTEX-139UW-0011-R11a-SM-5IJGN 16.7
Show all
 

Brain - Cerebellum

Brain - Cerebellum
RPKM: 23.8
Samples: 125

Max RPKM: 33.7
Min RPKM: 13.5
Std RPKM: 3.2
Median RPKM: 23.2
GTEX-PVOW-2626-SM-32PL8 33.7
GTEX-145LU-2626-SM-5LU9Z 30.7
GTEX-P44H-2426-SM-2XCEJ 30.3
GTEX-RNOR-2226-SM-2TF5O 30.3
GTEX-WHSE-2926-SM-3NMBG 30.3
GTEX-QMR6-1326-SM-32PLB 30.2
GTEX-R55F-1226-SM-2TF59 30.2
GTEX-S7SE-2526-SM-2XCDL 29.3
GTEX-12WSH-3126-SM-5LZW8 29.0
GTEX-T2IS-2926-SM-32QPO 29.0
GTEX-WZTO-2826-SM-3NM8P 28.9
GTEX-QDT8-3026-SM-32PKB 28.8
GTEX-WWYW-3026-SM-3NB36 28.6
GTEX-TSE9-2926-SM-3DB77 28.0
GTEX-147F4-3026-SM-5Q5BJ 27.8
GTEX-11O72-2826-SM-5HL6W 27.7
GTEX-13O3O-3026-SM-5KM42 27.3
GTEX-12ZZX-2826-SM-5BC6K 27.1
GTEX-13X6K-2826-SM-5O9DS 27.1
GTEX-Q2AG-2826-SM-2HMJQ 27.1
GTEX-12WSC-2926-SM-5BC5Z 27.0
GTEX-145MH-2926-SM-5Q5D2 27.0
GTEX-R55E-2526-SM-2TC6H 27.0
GTEX-145LS-3026-SM-5O99S 26.7
GTEX-11NV4-2226-SM-5BC4T 26.5
GTEX-131XH-2926-SM-5LZU4 26.5
GTEX-NPJ7-2826-SM-2I3FU 26.4
GTEX-117XS-3126-SM-5GIDP 26.3
GTEX-13OW8-2926-SM-5L3FV 26.2
GTEX-RU72-2926-SM-2TF66 26.2
GTEX-14ASI-2926-SM-5Q5DG 26.0
GTEX-12126-0926-SM-5FQTW 25.9
GTEX-T5JC-2326-SM-32PMR 25.9
GTEX-13S7M-3026-SM-5S2QQ 25.8
GTEX-145MG-3126-SM-5Q5D3 25.8
GTEX-12WSE-2926-SM-5RQJ9 25.6
GTEX-X4XX-2926-SM-3NMB1 25.6
GTEX-11ZVC-3026-SM-59HJM 25.5
GTEX-14A5I-2826-SM-5SIBF 25.3
GTEX-13CF2-3026-SM-5IFFX 25.2
GTEX-NPJ8-2626-SM-2D7W2 25.1
GTEX-QVUS-2926-SM-3GIJB 25.0
GTEX-14DAQ-3026-SM-5S2QZ 24.8
GTEX-13VXU-3026-SM-5LU3K 24.6
GTEX-13X6I-2926-SM-5Q5C3 24.6
GTEX-Y8DK-0726-SM-4TT3S 24.5
GTEX-139TS-3126-SM-5LZWX 24.4
GTEX-ZYFD-2926-SM-5GID9 24.3
GTEX-13QIC-3026-SM-5LU58 24.2
GTEX-PWO3-1026-SM-2I5F2 24.1
GTEX-11PRG-2826-SM-5BC54 23.7
GTEX-12ZZZ-3126-SM-5LZU6 23.7
GTEX-14BIN-3326-SM-5Q5E6 23.7
GTEX-14E7W-2926-SM-5S2R8 23.7
GTEX-ZAJG-3026-SM-5HL92 23.7
GTEX-11GSO-3026-SM-5Q5AL 23.6
GTEX-13JVG-3226-SM-5IJGJ 23.5
GTEX-ZYY3-3026-SM-5GIEJ 23.5
GTEX-11NUK-3026-SM-5986K 23.4
GTEX-13OVH-2926-SM-5IJFH 23.3
GTEX-WVLH-2926-SM-3MJG5 23.3
GTEX-XLM4-2926-SM-4AT59 23.3
GTEX-13OW6-2926-SM-5KM29 23.2
GTEX-11EMC-3326-SM-5P9JH 23.1
GTEX-13112-2926-SM-5DUWT 23.1
GTEX-139TT-2626-SM-5LZUB 23.1
GTEX-144GL-2926-SM-5O99F 23.1
GTEX-T6MN-2526-SM-32PMN 23.0
GTEX-N7MS-2526-SM-2D7W3 22.9
GTEX-111FC-3326-SM-5GZYV 22.8
GTEX-13FXS-3026-SM-5LZYO 22.8
GTEX-13O3Q-3026-SM-5IJGD 22.8
GTEX-13FHP-2926-SM-5IJG9 22.7
GTEX-13NYB-3226-SM-5J2ND 22.7
GTEX-N7MT-1226-SM-2D7W4 22.6
GTEX-X4EP-3026-SM-3P5YP 22.6
GTEX-ZAB4-2926-SM-57WCV 22.6
GTEX-12WSD-3026-SM-5LZU7 22.5
GTEX-13JUV-3026-SM-5K7WX 22.4
GTEX-1128S-2826-SM-5N9DI 22.3
GTEX-13OVL-3026-SM-5IJF1 22.3
GTEX-X261-3126-SM-4PQZC 22.3
GTEX-11ZUS-2826-SM-5EQKW 22.1
GTEX-1399T-3126-SM-5IJFS 22.1
GTEX-13OVJ-2726-SM-5IJG6 22.0
GTEX-QVJO-1325-SM-2S1QX 22.0
GTEX-WL46-2826-SM-3LK81 22.0
GTEX-11DZ1-2926-SM-5A5KI 21.9
GTEX-YJ89-2926-SM-5P9IT 21.9
GTEX-1192X-3226-SM-5987D 21.8
GTEX-1313W-3026-SM-5LZUZ 21.7
GTEX-ZUA1-2926-SM-59HL3 21.7
GTEX-13OW5-3126-SM-5MR3Y 21.5
GTEX-13PVQ-2926-SM-5L3HJ 21.5
GTEX-UTHO-2926-SM-3P5Z9 21.4
GTEX-Y111-2826-SM-4TT3O 21.4
GTEX-11DYG-2926-SM-5H132 21.3
GTEX-1269C-3126-SM-5EGI6 21.3
GTEX-11GSP-3126-SM-5A5LL 21.2
GTEX-Z93S-2826-SM-57WBL 21.2
GTEX-ZVT3-2926-SM-5GU6M 21.2
GTEX-14C5O-2926-SM-5RQI1 21.1
GTEX-12WSM-2126-SM-5GCOC 21.0
GTEX-14BIM-3126-SM-5Q5C7 21.0
GTEX-11DXW-1026-SM-5H11K 20.9
GTEX-11EI6-2926-SM-5985U 20.9
GTEX-13OW7-2926-SM-5MR3Z 20.9
GTEX-13N2G-3126-SM-5IJGL 20.8
GTEX-XOTO-2926-SM-4B65G 20.7
GTEX-11DXY-3126-SM-5N9BT 20.6
GTEX-11TTK-2826-SM-5GU5K 20.6
GTEX-11ZTS-3226-SM-5EGID 20.3
GTEX-12ZZY-2926-SM-5DUXO 20.2
GTEX-132Q8-2926-SM-5IFFP 20.2
GTEX-ZAK1-2926-SM-5HL9S 20.2
GTEX-YFC4-3026-SM-5IFJK 20.1
GTEX-11ONC-3026-SM-5985W 20.0
GTEX-131YS-3026-SM-5EGHY 19.8
GTEX-13FHO-2926-SM-5L3ES 19.8
GTEX-12WSB-3026-SM-59HKM 19.7
GTEX-ZZPT-2926-SM-5EQ5S 19.5
GTEX-13RTJ-3126-SM-5S2Q4 19.0
GTEX-13G51-3126-SM-5IJG7 18.1
GTEX-XMD1-2826-SM-4AT5F 15.4
GTEX-11OF3-3126-SM-5GU5E 13.5
Show all

CEREBELLUM - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

72.5

FANTOM5 sample id

Sample description

Tags Per Million

Cerebellum
Tags Per Million: 72.5
FF:10166-103B4 76 years, female 86.4
FF:10083-102B2 22-68 years, mixed 58.6

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