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TISSUE ATLAS PRIMARY DATA OVARY

GENE/PROTEIN

Antibody validation


Dictionary

Ovary

Tissue proteome

Ovary

OVARY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:93.5TPM
GTEx:22.4RPKM
FANTOM5:59.6Tags Per Million

OVARY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Ovarian stroma cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB016680

 

Ovarian stroma cells

Not detected  
 
 

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

93.5

overview Female, age 64
Sample 1
TPM: 102.3
Cell types%
Stromal cells: 70
Smooth muscle cells: 15
Other cell types: 15
overview Female, age 52
Sample 2
TPM: 69.5
Cell types%
Stromal cells: 95
Other cell types: 5
overview Female, age 80
Sample 3
TPM: 108.5
Cell types%
Stromal cells: 70
Smooth muscle cells: 25
Other cell types: 5

OVARY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

22.4

GTEx sample id

RPKM

 

Ovary

Ovary
RPKM: 22.4
Samples: 97

Max RPKM: 30.9
Min RPKM: 13.6
Std RPKM: 3.2
Median RPKM: 22.1
GTEX-146FH-2526-SM-5Q5BP 30.9
GTEX-132AR-1426-SM-5IFF1 30.4
GTEX-WI4N-2526-SM-4OOSE 29.5
GTEX-X4EO-2426-SM-4QASD 28.9
GTEX-11ZTS-1926-SM-5CVLA 28.5
GTEX-11GSP-0226-SM-5A5KV 28.3
GTEX-ZAJG-2726-SM-5S2MU 28.3
GTEX-13OVJ-2426-SM-5KM3I 28.2
GTEX-XV7Q-1426-SM-4BRWA 28.0
GTEX-133LE-1226-SM-5IFGC 27.9
GTEX-13W3W-1526-SM-5LU5I 26.4
GTEX-13QIC-1526-SM-5IJFL 26.3
GTEX-Q734-0726-SM-48TZP 25.7
GTEX-139D8-2426-SM-5KM3A 25.6
GTEX-12WSG-1426-SM-5FQUK 25.6
GTEX-P4QT-2426-SM-3NMCL 25.5
GTEX-11EM3-1726-SM-5N9D1 25.4
GTEX-W5WG-0926-SM-4RTX9 25.3
GTEX-P78B-1926-SM-3P616 24.9
GTEX-ZYY3-2726-SM-5EGH4 24.9
GTEX-ZC5H-2026-SM-5CVN2 24.3
GTEX-13O3O-2726-SM-5KM35 24.3
GTEX-TML8-0926-SM-4DXSJ 24.1
GTEX-13FTX-0926-SM-5IFF7 24.1
GTEX-ZPIC-1426-SM-4WWCP 24.1
GTEX-S7SF-1326-SM-4AD4P 23.9
GTEX-S32W-1226-SM-4AD67 23.8
GTEX-RU72-2226-SM-46MUE 23.8
GTEX-T2IS-2026-SM-4DM6W 23.7
GTEX-11DXX-1426-SM-5GIDU 23.6
GTEX-ZZPU-2126-SM-5EGIU 23.1
GTEX-13N11-0526-SM-5IJFI 23.0
GTEX-11EMC-1726-SM-5H11P 22.9
GTEX-12WSD-2726-SM-59HLR 22.9
GTEX-QVJO-3126-SM-4R1KC 22.8
GTEX-1269C-1826-SM-5N9E1 22.8
GTEX-Y3IK-2026-SM-4YCDG 22.8
GTEX-QCQG-1426-SM-48U22 22.7
GTEX-TSE9-2226-SM-4DXUR 22.6
GTEX-13U4I-2126-SM-5LU55 22.6
GTEX-12WSJ-1226-SM-5LU91 22.6
GTEX-YFC4-2726-SM-5IFJW 22.5
GTEX-X8HC-2726-SM-46MUA 22.4
GTEX-14AS3-1326-SM-5RQJE 22.3
GTEX-RU1J-0826-SM-46MUU 22.3
GTEX-X15G-1726-SM-4PQZN 22.2
GTEX-1399S-2126-SM-5J2MH 22.2
GTEX-11P81-1526-SM-5P9GS 22.1
GTEX-PWCY-1326-SM-48TCU 22.1
GTEX-13PL7-2326-SM-5L3FY 22.1
GTEX-YJ8O-1026-SM-5CVM5 22.0
GTEX-12WSB-2226-SM-5GCOS 22.0
GTEX-13QBU-1526-SM-5LU3W 22.0
GTEX-OHPK-2426-SM-3MJGH 21.9
GTEX-XYKS-1726-SM-4E3IO 21.8
GTEX-U3ZN-1026-SM-4DXTC 21.8
GTEX-TMMY-1726-SM-4DXTD 21.8
GTEX-ZLWG-0926-SM-4WWC3 21.7
GTEX-131YS-2226-SM-5P9G8 21.6
GTEX-ZYFG-1726-SM-5GZZB 21.6
GTEX-RWS6-1026-SM-47JXD 21.5
GTEX-XUJ4-1326-SM-4BOQ9 21.5
GTEX-11ZVC-1426-SM-5EGGA 21.4
GTEX-XMD3-2326-SM-4AT5H 21.4
GTEX-Y114-1726-SM-4TT7U 21.4
GTEX-13VXT-1526-SM-5LU3J 21.4
GTEX-POMQ-1426-SM-3P61D 21.3
GTEX-ZYWO-1926-SM-5E456 21.2
GTEX-ZVT3-2626-SM-5GU5L 21.1
GTEX-11XUK-1626-SM-5GU5O 20.9
GTEX-145ME-1226-SM-5SIB6 20.8
GTEX-T6MO-1126-SM-4DM5D 20.7
GTEX-1313W-2726-SM-5P9IX 20.5
GTEX-P4PP-2426-SM-3P61L 20.4
GTEX-13PVR-1226-SM-5RQJ2 20.3
GTEX-PLZ4-2826-SM-3P617 20.3
GTEX-PX3G-2426-SM-48TZZ 20.2
GTEX-WWYW-2726-SM-4MVOP 20.1
GTEX-13D11-1126-SM-5KLYS 20.0
GTEX-11VI4-1026-SM-5EQM1 19.7
GTEX-RTLS-2326-SM-46MUH 19.6
GTEX-11ZTT-1826-SM-5CVLN 19.6
GTEX-12WSK-1926-SM-5LZVK 19.1
GTEX-S341-0726-SM-4AD5R 19.1
GTEX-12ZZX-2026-SM-5LZV9 18.9
GTEX-11I78-1926-SM-59878 18.9
GTEX-13X6H-1026-SM-5SIBE 18.8
GTEX-PWN1-2426-SM-48TDD 18.4
GTEX-ZVT2-0326-SM-5E44G 18.4
GTEX-T5JW-0426-SM-4DM7M 17.9
GTEX-ZP4G-0626-SM-4WWF1 17.4
GTEX-S4P3-0926-SM-4AD54 17.3
GTEX-XUZC-1026-SM-4BOPY 17.1
GTEX-XUW1-0126-SM-4BOOQ 16.8
GTEX-13OVI-0726-SM-5L3DD 16.2
GTEX-OHPL-2426-SM-48TDN 14.6
GTEX-UJHI-1226-SM-4IHLR 13.6
Show all

OVARY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

59.6

FANTOM5 sample id

Sample description

Tags Per Million

Ovary
Tags Per Million: 59.6
FF:10020-101D2 47,75,84 years, female 59.6

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