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TISSUE ATLAS PRIMARY DATA SALIVARY GLAND

GENE/PROTEIN

Antibody validation


Dictionary

Salivary gland

Tissue proteome

Salivary gland

SALIVARY GLAND - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:33.2TPM
GTEx:28.6RPKM
FANTOM5:51.4Tags Per Million

SALIVARY GLAND - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB016680

 

Glandular cells

Medium  
 
 
 

SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

33.2

overview Female, age 68
Sample 1
TPM: 37.9
Cell types%
Glandular cells: 45
Ductal cells: 25
Adipocytes: 5
Other cell types: 25
overview Male, age 60
Sample 2
TPM: 30.0
Cell types%
Glandular cells: 55
Ductal cells: 20
Adipocytes: 5
Endothelial cells: 5
Other cell types: 15
overview Female, age 21
Sample 3
TPM: 31.7
Cell types%
Glandular cells: 55
Ductal cells: 15
Adipocytes: 5
Endothelial cells: 5
Other cell types: 20

SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

28.6

GTEx sample id

RPKM

 

Minor Salivary Gland

Minor Salivary Gland
RPKM: 28.6
Samples: 57

Max RPKM: 64.4
Min RPKM: 15.1
Std RPKM: 8.4
Median RPKM: 27.5
GTEX-XV7Q-2426-SM-4BRV8 64.4
GTEX-Y5LM-1826-SM-4VDT9 50.0
GTEX-ZT9W-2126-SM-51MSF 45.8
GTEX-ZQG8-2126-SM-4YCF1 44.6
GTEX-ZPU1-2326-SM-57WEP 40.0
GTEX-11ZTS-3026-SM-5EQM7 39.3
GTEX-ZP4G-1926-SM-57WDZ 36.4
GTEX-WFJO-2026-SM-4LVM3 36.3
GTEX-Y3I4-1926-SM-4TT8L 35.4
GTEX-ZXG5-2826-SM-5NQ8T 34.2
GTEX-Y5V6-2226-SM-4VDTC 33.8
GTEX-1339X-2326-SM-5HL5B 32.5
GTEX-WOFM-2126-SM-4OOSR 32.1
GTEX-X5EB-1726-SM-4E3J7 31.4
GTEX-11WQK-2926-SM-5EQKT 31.2
GTEX-13111-2326-SM-5LZUQ 30.2
GTEX-1314G-2026-SM-5LZUM 30.2
GTEX-13OVI-2326-SM-5KM47 29.8
GTEX-ZA64-1726-SM-5CVMF 29.5
GTEX-XMK1-2626-SM-4B65R 29.5
GTEX-YF7O-2226-SM-5CVN8 29.4
GTEX-X261-2426-SM-4PQZU 29.2
GTEX-13QJC-2326-SM-5Q5CD 28.7
GTEX-13O21-1926-SM-5MR39 28.3
GTEX-1445S-2926-SM-5O993 28.2
GTEX-WYVS-2026-SM-4RGNS 27.7
GTEX-146FR-1226-SM-5SIA7 27.7
GTEX-13NYC-2626-SM-5K7VN 27.6
GTEX-12WSL-2126-SM-5GCNG 27.5
GTEX-1117F-3026-SM-5GZYU 27.2
GTEX-111FC-2926-SM-5GZY7 26.8
GTEX-YB5K-1726-SM-5IFIZ 26.7
GTEX-XGQ4-2626-SM-4AT6B 26.4
GTEX-13G51-2426-SM-5LZY8 25.7
GTEX-11P81-2026-SM-5P9GT 25.6
GTEX-145ME-1626-SM-5RQI3 25.6
GTEX-13JVG-2926-SM-5J2N9 25.4
GTEX-13113-1526-SM-5EGHV 25.4
GTEX-X15G-2126-SM-4PQZR 25.3
GTEX-Y111-2626-SM-4TT24 25.3
GTEX-ZE7O-2926-SM-51MSG 24.9
GTEX-ZC5H-2726-SM-5KLZW 24.2
GTEX-13NYB-2426-SM-5IFF4 23.4
GTEX-11P82-0926-SM-5986X 23.1
GTEX-13CF2-2426-SM-5LZYL 23.0
GTEX-12WSN-2226-SM-5DUXT 22.8
GTEX-11ZTT-2226-SM-5CVLP 22.6
GTEX-131XF-2826-SM-5EGKH 21.8
GTEX-11TUW-2426-SM-5EQKB 21.5
GTEX-X3Y1-1926-SM-4PQZO 20.6
GTEX-11EQ9-2026-SM-5P9JI 20.2
GTEX-14B4R-1426-SM-5Q5CG 19.6
GTEX-11NV4-1926-SM-5N9D4 18.9
GTEX-12WSM-1826-SM-5BC64 18.1
GTEX-13OVL-2926-SM-5IFG3 17.1
GTEX-ZQUD-2126-SM-51MSY 15.2
GTEX-13VXT-1726-SM-5IFF5 15.1
Show all

SALIVARY GLAND - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

51.4

FANTOM5 sample id

Sample description

Tags Per Million

Salivary gland
Tags Per Million: 51.4
FF:10093-102C3 16-60 years, mixed 51.4

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