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TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:94.9TPM
GTEx:25.3RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB016680

 

Glandular cells

Medium  
 
 
 

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB016680

 

Glandular cells

Medium  
 
 
 

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

94.9

overview Female, age 33
Sample 1
TPM: 65.0
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82
Sample 2
TPM: 123.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71
Sample 3
TPM: 105.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66
Sample 4
TPM: 86.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

25.3

GTEx sample id

RPKM

 

Stomach

Stomach
RPKM: 25.3
Samples: 193

Max RPKM: 57.3
Min RPKM: 13.8
Std RPKM: 7.8
Median RPKM: 23.2
GTEX-11WQK-2626-SM-5EQ4K 57.3
GTEX-1339X-1426-SM-5K7YO 52.6
GTEX-11EQ9-1226-SM-5987E 50.1
GTEX-P4QT-1526-SM-3NMCT 48.9
GTEX-ZTX8-0426-SM-59HLG 47.8
GTEX-Y114-1226-SM-4TT88 46.6
GTEX-R55G-1126-SM-48FDG 44.5
GTEX-R55C-1026-SM-48FCM 44.4
GTEX-ZYVF-2726-SM-5GID4 43.3
GTEX-ZV6S-0926-SM-57WGB 42.6
GTEX-13N1W-2026-SM-5K7YU 42.3
GTEX-132AR-2426-SM-5IFFD 41.3
GTEX-12WSJ-0926-SM-5P9JD 39.6
GTEX-S4P3-0726-SM-4AD57 39.6
GTEX-11NUK-2426-SM-5BC4U 37.8
GTEX-13X6H-1626-SM-5Q5CT 35.8
GTEX-11TT1-0726-SM-5GU5A 35.0
GTEX-WH7G-1526-SM-4LVMX 35.0
GTEX-117YW-2226-SM-5N9DB 34.7
GTEX-13O61-1126-SM-5L3FI 34.5
GTEX-RU1J-0526-SM-46MUT 34.2
GTEX-U4B1-1026-SM-4DXT1 34.1
GTEX-U8T8-1226-SM-4E3IH 34.1
GTEX-11P82-0726-SM-5PNYL 33.8
GTEX-13O3Q-2126-SM-5KM4C 33.8
GTEX-12C56-0526-SM-5FQST 33.1
GTEX-R55D-1526-SM-48FEJ 33.0
GTEX-XPVG-1526-SM-4B66C 32.8
GTEX-13111-1226-SM-5GCNC 32.5
GTEX-P4PQ-1526-SM-3NMCK 32.5
GTEX-T8EM-1226-SM-4DM5J 32.4
GTEX-YJ8A-1526-SM-5P9FT 32.2
GTEX-WFJO-1126-SM-4LVLZ 32.1
GTEX-XAJ8-0326-SM-47JYI 32.0
GTEX-TKQ1-0526-SM-4DXTG 31.5
GTEX-PLZ6-0826-SM-3P61K 31.3
GTEX-146FH-2126-SM-5SI9U 31.0
GTEX-11P7K-1726-SM-5GU6F 30.9
GTEX-SNOS-0826-SM-4DM5N 30.8
GTEX-OIZH-1526-SM-3NB1J 30.7
GTEX-S7SF-0626-SM-4AD4V 30.6
GTEX-WHPG-0426-SM-4M1XW 30.5
GTEX-WEY5-1226-SM-4LMIQ 30.0
GTEX-ZPIC-2026-SM-57WG3 30.0
GTEX-13QJ3-2726-SM-5SI6L 29.9
GTEX-QXCU-1926-SM-48FE4 29.9
GTEX-XBEW-1826-SM-4RTWX 29.8
GTEX-WZTO-2126-SM-4PQYW 29.6
GTEX-Y3IK-1426-SM-4YCES 29.6
GTEX-139D8-2326-SM-5IFGE 29.0
GTEX-ZYY3-1726-SM-5EGH3 28.9
GTEX-SIU7-1426-SM-4BRWT 28.8
GTEX-ZVT3-2126-SM-59HL2 28.8
GTEX-13PVQ-2126-SM-5L3FW 28.7
GTEX-XV7Q-1326-SM-4BRWM 28.7
GTEX-Y5LM-1326-SM-5RQIS 28.6
GTEX-13QBU-1126-SM-5LU44 28.5
GTEX-UPK5-2126-SM-4JBJK 28.1
GTEX-S4Z8-1226-SM-4AD6W 27.8
GTEX-11EI6-2426-SM-5PNVS 27.7
GTEX-145MO-2226-SM-5Q5BN 27.6
GTEX-14BMV-2226-SM-5RQHX 27.5
GTEX-YEC3-1426-101806-SM-5PNXX 27.5
GTEX-11I78-1726-SM-5A5M3 27.3
GTEX-T5JC-1926-SM-4DM6Q 26.9
GTEX-ZE7O-3026-SM-51MS4 26.9
GTEX-131XE-2226-SM-5PNYX 26.5
GTEX-Q2AH-1126-SM-48TZM 26.5
GTEX-131XG-1226-SM-5EGH9 26.1
GTEX-QDVN-1226-SM-48TZ5 26.1
GTEX-UPIC-1826-SM-4IHKC 26.1
GTEX-13S7M-1826-SM-5RQK6 26.0
GTEX-1399U-1626-SM-5P9J3 25.9
GTEX-12WSD-2326-SM-59HKQ 25.7
GTEX-RTLS-2626-SM-46MUJ 25.7
GTEX-OHPK-1526-SM-3MJGM 25.3
GTEX-TMMY-1626-SM-4DXTY 25.3
GTEX-XXEK-0826-SM-4BRWG 25.3
GTEX-133LE-1326-SM-5IFGO 25.2
GTEX-UJHI-1026-SM-4IHJP 25.1
GTEX-Y9LG-1026-SM-5IFJN 25.0
GTEX-OOBJ-1526-SM-3NB1Q 24.9
GTEX-12BJ1-1726-SM-5HL9B 24.8
GTEX-PWOO-1226-SM-48TCO 24.7
GTEX-11VI4-0326-SM-5EQ6L 24.5
GTEX-PWN1-1526-SM-48TDA 24.4
GTEX-S4Q7-0726-SM-4AD5F 24.3
GTEX-XQ8I-2026-SM-4BOOL 24.3
GTEX-Y8E4-1526-SM-4WWDI 24.2
GTEX-13RTK-0226-SM-5RQHR 24.1
GTEX-145ME-1026-SM-5O9B4 24.0
GTEX-WFG8-1326-SM-4LVN3 24.0
GTEX-13CF3-1926-SM-5K7WF 23.8
GTEX-WFG7-1326-SM-4LMK1 23.8
GTEX-P78B-1826-SM-3P5YX 23.6
GTEX-1211K-1426-SM-5FQTF 23.2
GTEX-14BMU-1126-SM-5RQJ8 23.2
GTEX-QCQG-0526-SM-48U2A 23.0
GTEX-145MN-1326-SM-5NQ9S 22.9
GTEX-TKQ2-0926-SM-4DXU5 22.9
GTEX-146FR-2026-SM-5NQAI 22.8
GTEX-11GSP-2126-SM-5HL5E 22.6
GTEX-ZVP2-1626-SM-5GU5D 22.6
GTEX-11EM3-1026-SM-5A5KL 22.5
GTEX-131XF-1226-SM-5HL8V 22.5
GTEX-139YR-1926-SM-5LZXM 22.4
GTEX-T6MO-0726-SM-4DM58 22.4
GTEX-117YX-1026-SM-5H11V 22.2
GTEX-Y3I4-1626-SM-4TT7W 22.1
GTEX-ZAB4-1526-SM-5CVN7 22.1
GTEX-ZZPU-1426-SM-5GZZ6 22.0
GTEX-13OVI-2426-SM-5KM4J 21.9
GTEX-13U4I-2526-SM-5SI8Z 21.7
GTEX-QDVJ-1426-SM-48U1Y 21.6
GTEX-XUJ4-1226-SM-4BOPD 21.6
GTEX-111YS-1126-SM-5GZYQ 21.5
GTEX-12WSK-1426-SM-5CVNN 21.5
GTEX-13FTW-1726-SM-5KM2B 21.5
GTEX-144GN-1226-SM-5O991 21.5
GTEX-OXRK-1626-SM-3NB17 21.4
GTEX-11DXX-1326-SM-5GIDZ 21.2
GTEX-O5YW-1526-SM-3MJGL 21.2
GTEX-POMQ-0826-SM-3P61H 21.2
GTEX-SNMC-0626-SM-4DM6H 21.1
GTEX-YFCO-0826-SM-5LUAG 21.0
GTEX-ZF2S-1426-SM-57WET 21.0
GTEX-13FTX-0726-SM-5N9BI 20.9
GTEX-V955-1326-SM-4JBHR 20.9
GTEX-1399R-1126-SM-5IFIO 20.7
GTEX-QMRM-1126-SM-447BN 20.7
GTEX-NFK9-1526-SM-3LK7B 20.6
GTEX-WHWD-1426-SM-4OORU 20.6
GTEX-13FH7-1026-SM-5IJGF 20.5
GTEX-PWCY-0926-SM-48TD7 20.5
GTEX-Q2AI-0826-SM-48TZO 20.4
GTEX-13OW6-2526-SM-5IJEC 20.3
GTEX-13O21-0926-SM-5IFGT 20.2
GTEX-RM2N-0826-SM-48FD3 20.2
GTEX-111CU-0926-SM-5EGIK 20.1
GTEX-R53T-1226-SM-48FCT 20.1
GTEX-YEC4-1426-SM-5IFHS 20.1
GTEX-S3XE-1026-SM-4AD4O 20.0
GTEX-ZY6K-0726-SM-5A5L8 20.0
GTEX-13113-0726-SM-5LZUF 19.8
GTEX-Y8LW-0826-SM-4WWDO 19.8
GTEX-145LT-1426-SM-5O9B3 19.7
GTEX-QLQ7-0826-SM-447B3 19.7
GTEX-S4UY-1626-SM-4AD55 19.7
GTEX-ZLV1-0826-SM-4WWEQ 19.6
GTEX-132QS-1826-SM-5IFFN 19.5
GTEX-XBED-1226-SM-4AT5V 19.5
GTEX-V1D1-1726-SM-4JBHB 19.4
GTEX-S341-0626-SM-4AD5T 19.3
GTEX-S95S-0826-SM-4B64N 19.3
GTEX-Q734-1026-SM-48U16 19.2
GTEX-WRHK-0626-SM-4MVOE 19.2
GTEX-QV31-0626-SM-447C5 19.1
GTEX-ZV7C-1626-SM-5NQ7E 19.1
GTEX-ZYFG-1326-SM-5GICJ 19.1
GTEX-ZQUD-0826-SM-57WDQ 19.0
GTEX-T5JW-0926-SM-4DM5K 18.9
GTEX-ZP4G-1226-SM-4WWCJ 18.7
GTEX-1399S-1626-SM-5P9GI 18.6
GTEX-13D11-2126-SM-5IFH2 18.6
GTEX-SUCS-0926-SM-4DM4Z 18.6
GTEX-ZLFU-1326-SM-4WWET 18.6
GTEX-12696-1726-SM-5EQLH 18.5
GTEX-QLQW-0726-SM-447AA 18.4
GTEX-U3ZN-2026-SM-4DXUC 18.4
GTEX-ZVZP-1726-SM-5GZWY 18.3
GTEX-P4PP-1526-SM-3P61M 18.2
GTEX-PW2O-1226-SM-48TCH 18.0
GTEX-ZXES-1426-SM-5NQ8S 17.9
GTEX-VJYA-1026-SM-4KL21 17.4
GTEX-ZZ64-0426-SM-5E43F 17.3
GTEX-ZA64-0826-SM-5HL9U 17.1
GTEX-12WSG-2026-SM-5FQUU 16.8
GTEX-RWS6-0926-SM-47JXE 16.7
GTEX-ZVT2-1626-SM-51MRC 16.7
GTEX-QV44-1226-SM-4R1KE 16.6
GTEX-X15G-1126-SM-4PQZG 16.6
GTEX-UJMC-1226-SM-4IHLI 16.4
GTEX-1122O-1926-SM-5EGIQ 16.2
GTEX-ZT9W-1526-SM-4YCDE 16.1
GTEX-ZPU1-1626-SM-4WWB2 15.6
GTEX-ZDYS-1926-SM-5HL59 15.5
GTEX-XUZC-0726-SM-4BOPH 15.0
GTEX-WFON-1126-SM-4LVMA 14.9
GTEX-144GM-1726-SM-5O9AS 14.8
GTEX-W5WG-1726-SM-4LMI5 14.5
GTEX-11NSD-1426-SM-5HL67 14.2
GTEX-PX3G-1526-SM-48U11 13.9
GTEX-Y5V6-1326-SM-4VDTF 13.8
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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