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TISSUE ATLAS PRIMARY DATA OVARY

GENE/PROTEIN

Antibody validation


Dictionary

Ovary

Tissue proteome

Ovary

OVARY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:1294.2TPM
GTEx:205.7RPKM
FANTOM5:433.3Tags Per Million

OVARY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Follicle cells:Not detected
Ovarian stroma cells:Medium
 
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA007338

 

Antibody CAB018603

 

Antibody CAB019276

 

Follicle cells

Not detected   Medium  

Ovarian stroma cells

Medium   High   High  
        
     
     
     

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

1294.2

overview Female, age 64
Sample 1
TPM: 1311.4
Cell types%
Stromal cells: 70
Smooth muscle cells: 15
Other cell types: 15
overview Female, age 52
Sample 2
TPM: 1135.9
Cell types%
Stromal cells: 95
Other cell types: 5
overview Female, age 80
Sample 3
TPM: 1435.4
Cell types%
Stromal cells: 70
Smooth muscle cells: 25
Other cell types: 5

OVARY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

205.7

GTEx sample id

RPKM

 

Ovary

Ovary
RPKM: 205.7
Samples: 97

Max RPKM: 426
Min RPKM: 52.4
Std RPKM: 73.7
Median RPKM: 206.5
GTEX-13OVI-0726-SM-5L3DD 426.0
GTEX-ZLWG-0926-SM-4WWC3 356.8
GTEX-11ZTS-1926-SM-5CVLA 340.5
GTEX-133LE-1226-SM-5IFGC 333.1
GTEX-X8HC-2726-SM-46MUA 327.1
GTEX-12WSD-2726-SM-59HLR 321.9
GTEX-S341-0726-SM-4AD5R 318.9
GTEX-ZZPU-2126-SM-5EGIU 310.7
GTEX-ZYY3-2726-SM-5EGH4 308.7
GTEX-13N11-0526-SM-5IJFI 298.7
GTEX-ZYFG-1726-SM-5GZZB 296.4
GTEX-XUW1-0126-SM-4BOOQ 291.4
GTEX-ZYWO-1926-SM-5E456 287.6
GTEX-1269C-1826-SM-5N9E1 286.3
GTEX-P78B-1926-SM-3P616 285.2
GTEX-11ZVC-1426-SM-5EGGA 281.2
GTEX-XUJ4-1326-SM-4BOQ9 279.9
GTEX-ZPIC-1426-SM-4WWCP 268.7
GTEX-ZVT3-2626-SM-5GU5L 267.0
GTEX-S32W-1226-SM-4AD67 264.6
GTEX-13PL7-2326-SM-5L3FY 263.7
GTEX-RWS6-1026-SM-47JXD 263.2
GTEX-145ME-1226-SM-5SIB6 263.2
GTEX-13X6H-1026-SM-5SIBE 261.5
GTEX-WWYW-2726-SM-4MVOP 256.3
GTEX-XMD3-2326-SM-4AT5H 252.8
GTEX-RU72-2226-SM-46MUE 251.6
GTEX-13FTX-0926-SM-5IFF7 248.9
GTEX-QVJO-3126-SM-4R1KC 246.9
GTEX-139D8-2426-SM-5KM3A 245.2
GTEX-ZVT2-0326-SM-5E44G 244.6
GTEX-YFC4-2726-SM-5IFJW 244.4
GTEX-S4P3-0926-SM-4AD54 243.5
GTEX-TSE9-2226-SM-4DXUR 240.1
GTEX-Y3IK-2026-SM-4YCDG 240.1
GTEX-Y114-1726-SM-4TT7U 237.9
GTEX-1313W-2726-SM-5P9IX 234.2
GTEX-11VI4-1026-SM-5EQM1 228.8
GTEX-11I78-1926-SM-59878 228.2
GTEX-XV7Q-1426-SM-4BRWA 219.6
GTEX-13QIC-1526-SM-5IJFL 215.2
GTEX-11P81-1526-SM-5P9GS 214.0
GTEX-13O3O-2726-SM-5KM35 212.8
GTEX-XYKS-1726-SM-4E3IO 212.4
GTEX-11EM3-1726-SM-5N9D1 212.0
GTEX-11GSP-0226-SM-5A5KV 210.0
GTEX-P4PP-2426-SM-3P61L 210.0
GTEX-12ZZX-2026-SM-5LZV9 209.1
GTEX-PX3G-2426-SM-48TZZ 206.5
GTEX-W5WG-0926-SM-4RTX9 200.3
GTEX-13OVJ-2426-SM-5KM3I 199.8
GTEX-12WSK-1926-SM-5LZVK 198.4
GTEX-P4QT-2426-SM-3NMCL 195.7
GTEX-OHPK-2426-SM-3MJGH 195.1
GTEX-QCQG-1426-SM-48U22 194.5
GTEX-12WSB-2226-SM-5GCOS 190.8
GTEX-X15G-1726-SM-4PQZN 189.8
GTEX-UJHI-1226-SM-4IHLR 186.9
GTEX-RTLS-2326-SM-46MUH 183.8
GTEX-11DXX-1426-SM-5GIDU 182.7
GTEX-11XUK-1626-SM-5GU5O 178.5
GTEX-12WSJ-1226-SM-5LU91 178.4
GTEX-14AS3-1326-SM-5RQJE 177.7
GTEX-ZP4G-0626-SM-4WWF1 175.7
GTEX-POMQ-1426-SM-3P61D 174.5
GTEX-U3ZN-1026-SM-4DXTC 171.2
GTEX-YJ8O-1026-SM-5CVM5 168.5
GTEX-TML8-0926-SM-4DXSJ 167.8
GTEX-XUZC-1026-SM-4BOPY 164.5
GTEX-PWN1-2426-SM-48TDD 163.1
GTEX-13W3W-1526-SM-5LU5I 158.4
GTEX-PWCY-1326-SM-48TCU 158.0
GTEX-X4EO-2426-SM-4QASD 157.2
GTEX-T2IS-2026-SM-4DM6W 156.6
GTEX-RU1J-0826-SM-46MUU 149.5
GTEX-131YS-2226-SM-5P9G8 141.2
GTEX-T5JW-0426-SM-4DM7M 140.3
GTEX-PLZ4-2826-SM-3P617 138.6
GTEX-12WSG-1426-SM-5FQUK 136.7
GTEX-Q734-0726-SM-48TZP 133.4
GTEX-13VXT-1526-SM-5LU3J 130.9
GTEX-TMMY-1726-SM-4DXTD 130.7
GTEX-11EMC-1726-SM-5H11P 128.8
GTEX-13U4I-2126-SM-5LU55 128.5
GTEX-132AR-1426-SM-5IFF1 125.1
GTEX-11ZTT-1826-SM-5CVLN 124.0
GTEX-13QBU-1526-SM-5LU3W 120.9
GTEX-146FH-2526-SM-5Q5BP 110.4
GTEX-ZAJG-2726-SM-5S2MU 107.0
GTEX-S7SF-1326-SM-4AD4P 91.7
GTEX-WI4N-2526-SM-4OOSE 86.6
GTEX-1399S-2126-SM-5J2MH 85.2
GTEX-T6MO-1126-SM-4DM5D 70.8
GTEX-ZC5H-2026-SM-5CVN2 67.0
GTEX-OHPL-2426-SM-48TDN 61.5
GTEX-13D11-1126-SM-5KLYS 55.6
GTEX-13PVR-1226-SM-5RQJ2 52.4
Show all

OVARY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

433.3

FANTOM5 sample id

Sample description

Tags Per Million

Ovary
Tags Per Million: 433.3
FF:10020-101D2 47,75,84 years, female 433.3

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