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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 16.3
Min RPKM: 3.5
Std RPKM: 2.8
Median RPKM: 9.2
GTEX-P44H-0011-R1A-SM-3NM8J
16.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
15.8
GTEX-QVUS-0011-R1A-SM-3GAD2
15.7
GTEX-UTHO-0011-R1A-SM-3GIJO
15.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
14.4
GTEX-PVOW-0011-R1A-SM-32PL6
14.2
GTEX-WZTO-0011-R1B-SM-3NMAR
14.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
13.9
GTEX-T6MN-0011-R1A-SM-32QOY
13.7
GTEX-13QJC-0011-R1b-SM-5S2UU
13.4
GTEX-QMR6-0011-R1A-SM-32PKW
13.4
GTEX-11ZTS-0011-R1a-SM-5BC71
12.9
GTEX-11UD1-0011-R1b-SM-5BC7D
12.8
GTEX-NPJ8-0011-R1a-SM-33HCB
12.3
GTEX-13G51-0011-R1a-SM-5LZYR
12.2
GTEX-1212Z-0011-R1b-SM-5BC72
12.2
GTEX-13OVL-0011-R1a-SM-5L3H5
12.1
GTEX-X585-0011-R1B-SM-46MVE
11.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
11.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
11.5
GTEX-131XH-0011-R1a-SM-5DUWA
11.5
GTEX-QDT8-0011-R1A-SM-32PKS
11.5
GTEX-XMD1-0011-R1A-SM-4AT4C
11.4
GTEX-13N1W-0011-R1b-SM-5MR4T
11.4
GTEX-13N2G-0011-R1b-SM-5MR3G
11.3
GTEX-13OW5-0011-R1b-SM-5L3GE
11.3
GTEX-XOTO-0011-R1B-SM-4B65C
11.1
GTEX-13O3O-0011-R1b-SM-5KM2K
11.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
10.9
GTEX-14ASI-0011-R1b-SM-5S2TY
10.8
GTEX-QVJO-0011-R1A-SM-2S1QI
10.8
GTEX-11GSO-0011-R1b-SM-57WD3
10.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
10.5
GTEX-N7MT-0011-R1a-SM-5SI7S
10.4
GTEX-13JUV-0011-R1a-SM-5LZY4
10.3
GTEX-139TT-0011-R1a-SM-5LZVD
10.3
GTEX-12WSE-0011-R1b-SM-5GU4V
10.3
GTEX-12WSH-0011-R1a-SM-5GU5V
10.1
GTEX-13S7M-0011-R1b-SM-5PNZE
10.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
10.0
GTEX-145LS-0011-R1b-SM-5PNUP
9.8
GTEX-13NZA-0011-R1b-SM-5LUAF
9.7
GTEX-S7SE-0011-R1A-SM-2XCDE
9.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
9.2
GTEX-12WSB-0011-R1b-SM-5P9EY
9.2
GTEX-YFC4-0011-R1a-SM-4V6EH
9.2
GTEX-144GL-0011-R1a-SM-5PNZ5
9.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
9.1
GTEX-12WSM-0011-R1a-SM-5LZW6
9.1
GTEX-13X6I-0011-R1b-SM-5PNZC
9.1
GTEX-N7MS-0011-R1a-SM-2HMJG
9.0
GTEX-131YS-0011-R1a-SM-5DUXC
8.8
GTEX-PWO3-0011-R1A-SM-2I5EW
8.8
GTEX-WWYW-0011-R1A-SM-3TW8G
8.8
GTEX-12WSD-0011-R1b-SM-5LZVY
8.7
GTEX-13NYS-0011-R1b-SM-5MR55
8.7
GTEX-1313W-0011-R1b-SM-5EQ4A
8.5
GTEX-13FXS-0011-R1a-SM-5K7U6
8.4
GTEX-12WSF-0011-R1a-SM-5DUVI
8.4
GTEX-13JVG-0011-R1a-SM-5KM32
8.4
GTEX-NPJ7-0011-R1a-SM-3GACT
8.3
GTEX-13OW7-0011-R1b-SM-5L3HF
8.3
GTEX-13FHO-0011-R1b-SM-5KLZG
8.2
GTEX-132Q8-0011-R1a-SM-5EGLK
8.1
GTEX-13OW8-0011-R1a-SM-5L3HI
8.1
GTEX-WL46-0011-R1A-SM-3LK6M
8.0
GTEX-WVLH-0011-R1A-SM-4MVOK
8.0
GTEX-13SLW-0011-R1a-SM-5S2W7
7.7
GTEX-T5JC-0011-R1A-SM-32PM6
7.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
7.6
GTEX-TSE9-0011-R1A-SM-3DB7E
7.6
GTEX-13FLW-0011-R1b-SM-5LZX2
7.5
GTEX-R55E-0011-R1A-SM-2TC6N
7.5
GTEX-145LU-0011-R1a-SM-5Q5CE
7.4
GTEX-13112-0011-R1b-SM-5HL7K
7.3
GTEX-X4XX-0011-R1B-SM-3P622
7.3
GTEX-13PDP-0011-R1a-SM-5PNX5
6.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
6.6
GTEX-RNOR-0011-R1A-SM-5SI8F
6.4
GTEX-1399T-0011-R1b-SM-5DUWN
6.4
GTEX-11ONC-0011-R1a-SM-57WD4
6.2
GTEX-139T8-0011-R1a-SM-5HL75
6.2
GTEX-YJ89-0011-R1a-SM-4RGLS
6.0
GTEX-145MH-0011-R1b-SM-5PNWY
5.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
5.9
GTEX-13NYB-0011-R1b-SM-5KM4F
5.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
5.3
GTEX-13CF2-0011-R1a-SM-5LZY1
5.1
GTEX-144GO-0011-R1a-SM-5PNWO
5.0
GTEX-ZF28-0011-R1a-SM-4WWD1
5.0
GTEX-NL3H-0011-R1a-SM-48TDJ
4.9
GTEX-13FHP-0011-R1b-SM-5K7XL
4.8
GTEX-ZE7O-0011-R1a-SM-57WDM
3.9
GTEX-13FTY-0011-R1a-SM-5LZXE
3.5
Show all
HIPPOCAMPUS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.