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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 32.5
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 29.9
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 46.9
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 29.4
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 21.2
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 21.6
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 35.2
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 37.7
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 34.9
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 44.8
Min RPKM: 2.7
Std RPKM: 6.1
Median RPKM: 16.2
GTEX-OIZI-0126-SM-3NB13
44.8
GTEX-11P7K-1026-SM-5HL6Y
34.6
GTEX-O5YT-2126-SM-3MJGD
29.4
GTEX-WHSB-2126-SM-4M1XF
28.9
GTEX-WFON-2026-SM-4LVMW
28.8
GTEX-ZAB4-0126-SM-5CVMG
27.6
GTEX-13N2G-0126-SM-5N9DV
27.4
GTEX-12WSM-1326-SM-5GCP9
27.3
GTEX-Y9LG-1726-SM-4VBQE
26.8
GTEX-ZDTT-2026-SM-5K7TY
26.6
GTEX-14A6H-2326-SM-5Q5B5
26.4
GTEX-WFG8-1926-SM-4LVM1
26.3
GTEX-PLZ5-1526-SM-3P5ZX
25.5
GTEX-147F4-0626-SM-5LUAK
25.1
GTEX-ZTX8-1126-SM-51MRM
24.5
GTEX-145LT-0426-SM-5LUAP
24.3
GTEX-YF7O-2026-SM-4W1YE
24.3
GTEX-X3Y1-2626-SM-4PQZI
24.2
GTEX-YB5E-1926-SM-5IFIG
23.7
GTEX-R55D-0126-SM-48FEL
23.6
GTEX-13OW6-0126-SM-5IJGM
22.7
GTEX-NFK9-0126-SM-3LK5H
22.7
GTEX-RN64-2326-SM-48FDW
22.7
GTEX-XGQ4-2026-SM-4AT6G
22.7
GTEX-XPVG-2226-SM-4B65U
22.6
GTEX-1399R-1626-SM-5P9GG
22.4
GTEX-QLQW-1026-SM-447A9
22.4
GTEX-QV44-1726-SM-4R1KG
22.3
GTEX-13FTW-1326-SM-5LZZD
22.2
GTEX-YFCO-1726-SM-4W21S
22.2
GTEX-X261-2326-SM-4PQYU
22.1
GTEX-QLQ7-1426-SM-4R1JX
21.4
GTEX-12C56-1426-SM-5FQSW
21.3
GTEX-12WSH-0326-SM-5GCNH
21.3
GTEX-P4QS-2126-SM-3NMCF
21.3
GTEX-144GN-1626-SM-5Q5BU
21.2
GTEX-Y8E4-2226-SM-5LU94
21.2
GTEX-YJ89-0626-SM-4TT3Z
21.2
GTEX-13O21-1226-SM-5J2MK
21.1
GTEX-RM2N-1326-SM-48FCW
21.0
GTEX-S3XE-1526-SM-4AD5A
21.0
GTEX-U3ZH-1526-SM-4DXV1
20.9
GTEX-QMRM-1526-SM-4R1K6
20.8
GTEX-XPT6-1626-SM-4B655
20.8
GTEX-11ONC-2226-SM-5HL6D
20.7
GTEX-U4B1-1526-SM-4DXSL
20.6
GTEX-R55C-1426-SM-48FED
20.5
GTEX-OOBJ-2126-SM-3NB1N
20.3
GTEX-V955-1926-SM-4KL1L
20.2
GTEX-OXRL-2126-SM-3NM98
19.8
GTEX-13OVH-0726-SM-5N9BU
19.6
GTEX-ZZ64-1126-SM-5GZXY
19.5
GTEX-11O72-0726-SM-5P9GO
19.4
GTEX-ZQUD-2026-SM-51MSM
19.4
GTEX-OIZH-2126-SM-3NB1P
19.3
GTEX-SUCS-1326-SM-4DM5T
19.3
GTEX-13O61-2026-SM-5J2M6
19.2
GTEX-U3ZM-1626-SM-4DXSK
19.1
GTEX-ZT9X-1426-SM-5DUX1
19.1
GTEX-139T6-1226-SM-5IFFC
18.4
GTEX-12696-0226-SM-5EGL3
18.3
GTEX-RWSA-2426-SM-47JXR
18.2
GTEX-12WSI-2126-SM-5GCMV
18.1
GTEX-SNMC-1026-SM-4DM7K
18.0
GTEX-ZDYS-1326-SM-5IJFF
18.0
GTEX-ZT9W-2226-SM-57WFU
18.0
GTEX-SNOS-1126-SM-4DM67
17.9
GTEX-VJYA-1426-SM-4KL1Y
17.7
GTEX-XMK1-2026-SM-4B65K
17.6
GTEX-Y5V6-1726-SM-4VDSZ
17.6
GTEX-OHPM-2126-SM-3LK75
17.5
GTEX-R55E-0726-SM-48FCZ
17.5
GTEX-ZA64-1626-SM-5CVME
17.4
GTEX-11P82-1526-SM-5BC5M
17.2
GTEX-11TT1-2226-SM-5GU6B
17.2
GTEX-YEC4-1526-SM-4W1YU
17.1
GTEX-ZV7C-2026-SM-5NQ8F
17.1
GTEX-T5JC-0726-SM-4DM55
17.0
GTEX-11WQK-2826-SM-5EQKH
16.9
GTEX-1399Q-2826-SM-5IJEZ
16.8
GTEX-ZUA1-2726-SM-59HLJ
16.8
GTEX-ZVZP-2226-SM-57WBF
16.7
GTEX-Q2AH-1526-SM-48TZG
16.5
GTEX-111CU-1726-SM-5EGHM
16.3
GTEX-111FC-1926-SM-5GZYC
16.3
GTEX-13NZB-2026-SM-5MR4M
16.3
GTEX-XAJ8-1326-SM-47JYT
16.1
GTEX-11EQ8-1426-SM-5EGJR
16.0
GTEX-WOFM-1126-SM-4OOSB
16.0
GTEX-12WSL-2326-SM-5DUXQ
15.9
GTEX-S33H-0126-SM-4AD62
15.8
GTEX-X5EB-2026-SM-4E3KA
15.8
GTEX-13FLW-2126-SM-5N9FD
15.7
GTEX-14753-0626-SM-5Q5CY
15.6
GTEX-PW2O-1426-SM-48TCD
15.5
GTEX-1339X-1926-SM-5PNVP
15.3
GTEX-TKQ1-0926-SM-4DXU2
15.2
GTEX-111YS-2026-SM-5EGGL
15.1
GTEX-ZAB5-2426-SM-5CVMW
15.1
GTEX-YEC3-1726-SM-5IFIK
15.0
GTEX-13111-1526-SM-5EGJX
14.9
GTEX-13NYB-2226-SM-5MR58
14.9
GTEX-S4Q7-1226-SM-4AD5I
14.9
GTEX-XBED-2026-SM-4AT5D
14.8
GTEX-11EQ9-1926-SM-5PNVV
14.6
GTEX-V1D1-2126-SM-4JBH4
14.6
GTEX-131XE-0426-SM-5IJF4
14.3
GTEX-U8T8-1126-SM-4DXUE
14.2
GTEX-11DXZ-2126-SM-59881
14.0
GTEX-WVLH-2626-SM-4MVNV
14.0
GTEX-XBEC-0126-SM-4GIDT
13.9
GTEX-11EI6-2226-SM-5EGJM
13.8
GTEX-1212Z-0326-SM-5FQSJ
13.7
GTEX-WH7G-1926-SM-4LVMM
13.7
GTEX-Q2AI-1226-SM-48U14
13.5
GTEX-S95S-1126-SM-4B64E
13.5
GTEX-13NZA-2526-SM-5IJFX
13.3
GTEX-QV31-1126-SM-4R1K4
13.1
GTEX-11OF3-1826-SM-5987N
13.0
GTEX-139TT-2226-SM-5LZWO
13.0
GTEX-147JS-0126-SM-5S2TW
12.9
GTEX-T8EM-0126-SM-4DM5R
12.8
GTEX-13OW5-2526-SM-5L3I1
12.7
GTEX-TKQ2-1526-SM-4DXUN
12.7
GTEX-11NSD-1026-SM-5N9BE
12.4
GTEX-11LCK-2326-SM-5HL53
12.3
GTEX-145MO-0126-SM-5S2QU
12.3
GTEX-144GL-0726-SM-5LU4P
12.2
GTEX-XLM4-1526-SM-4AT6D
12.1
GTEX-S7SE-0326-SM-4AT5Q
12.0
GTEX-11GS4-2026-SM-5N9CP
11.9
GTEX-ZPU1-2126-SM-57WED
11.8
GTEX-ZVTK-0126-SM-57WDG
11.7
GTEX-Z93S-1726-SM-5HL8G
11.6
GTEX-ZYFC-0126-SM-5GIEH
11.6
GTEX-11NUK-2626-SM-5A5MB
11.5
GTEX-12ZZY-0126-SM-5LZV2
11.5
GTEX-U8XE-0126-SM-4E3I3
11.5
GTEX-WZTO-0326-SM-4PQYZ
11.5
GTEX-132QS-1226-SM-5P9GD
11.4
GTEX-S7PM-0626-SM-4AD4Q
11.2
GTEX-13OVL-0426-SM-5IFG6
10.6
GTEX-T6MN-2026-SM-4DM7L
10.6
GTEX-ZTSS-1526-SM-51MTC
10.5
GTEX-ZYT6-2726-SM-5GICP
10.4
GTEX-117XS-2026-SM-5GID1
10.0
GTEX-145MH-2326-SM-5O9AW
10.0
GTEX-UPJH-0126-SM-4IHLL
10.0
GTEX-OOBK-2126-SM-3LK5T
9.7
GTEX-RUSQ-2126-SM-47JXK
9.6
GTEX-13VXU-0726-SM-5J2O7
9.4
GTEX-QEG5-0126-SM-4R1JR
9.4
GTEX-13N1W-2626-SM-5IJEP
9.2
GTEX-139TS-1726-SM-5IJG5
8.8
GTEX-REY6-0126-SM-48FDT
8.8
GTEX-117YW-1526-SM-5EGGP
8.2
GTEX-Y111-2426-SM-4TT23
8.2
GTEX-P4QR-0226-SM-3NMCH
8.0
GTEX-QEG4-0126-SM-48TZE
8.0
GTEX-N7MS-0126-SM-3TW8O
7.9
GTEX-13O1R-0726-SM-5IJEI
7.8
GTEX-XQ3S-2726-SM-4BOP2
7.7
GTEX-11ZUS-2726-SM-5FQUA
7.4
GTEX-11NV4-1726-SM-5N9FC
7.3
GTEX-14ABY-0626-SM-5Q5C9
7.2
GTEX-144GM-0426-SM-5Q5C8
7.0
GTEX-WK11-0326-SM-4OOS6
7.0
GTEX-13FHP-2826-SM-5IJFW
6.4
GTEX-11WQC-2326-SM-5EQKE
5.6
GTEX-13112-0226-SM-5P9IV
5.4
GTEX-11TUW-2226-SM-5EQL9
4.8
GTEX-111VG-1926-SM-5GIDO
2.7
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.