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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:33.8TPM
GTEx:16.5RPKM
FANTOM5:47.6Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:Medium
Leydig cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA000168

 

Antibody HPA020464

 

Cells in seminiferous ducts

High   Medium  

Leydig cells

High   Low  
   
   
   

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

33.8

overview Male, age 56
Sample 1
TPM: 48.6
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 2
TPM: 32.5
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62
Sample 3
TPM: 29.9
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34
Sample 4
TPM: 46.9
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26
Sample 5
TPM: 29.4
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50
Sample 6
TPM: 21.2
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37
Sample 7
TPM: 21.6
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51
Sample 8
TPM: 35.2
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 9
TPM: 37.7
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26
Sample 10
TPM: 34.9
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

16.5

GTEx sample id

RPKM

 

Testis

Testis
RPKM: 16.5
Samples: 172

Max RPKM: 44.8
Min RPKM: 2.7
Std RPKM: 6.1
Median RPKM: 16.2
GTEX-OIZI-0126-SM-3NB13 44.8
GTEX-11P7K-1026-SM-5HL6Y 34.6
GTEX-O5YT-2126-SM-3MJGD 29.4
GTEX-WHSB-2126-SM-4M1XF 28.9
GTEX-WFON-2026-SM-4LVMW 28.8
GTEX-ZAB4-0126-SM-5CVMG 27.6
GTEX-13N2G-0126-SM-5N9DV 27.4
GTEX-12WSM-1326-SM-5GCP9 27.3
GTEX-Y9LG-1726-SM-4VBQE 26.8
GTEX-ZDTT-2026-SM-5K7TY 26.6
GTEX-14A6H-2326-SM-5Q5B5 26.4
GTEX-WFG8-1926-SM-4LVM1 26.3
GTEX-PLZ5-1526-SM-3P5ZX 25.5
GTEX-147F4-0626-SM-5LUAK 25.1
GTEX-ZTX8-1126-SM-51MRM 24.5
GTEX-145LT-0426-SM-5LUAP 24.3
GTEX-YF7O-2026-SM-4W1YE 24.3
GTEX-X3Y1-2626-SM-4PQZI 24.2
GTEX-YB5E-1926-SM-5IFIG 23.7
GTEX-R55D-0126-SM-48FEL 23.6
GTEX-13OW6-0126-SM-5IJGM 22.7
GTEX-NFK9-0126-SM-3LK5H 22.7
GTEX-RN64-2326-SM-48FDW 22.7
GTEX-XGQ4-2026-SM-4AT6G 22.7
GTEX-XPVG-2226-SM-4B65U 22.6
GTEX-1399R-1626-SM-5P9GG 22.4
GTEX-QLQW-1026-SM-447A9 22.4
GTEX-QV44-1726-SM-4R1KG 22.3
GTEX-13FTW-1326-SM-5LZZD 22.2
GTEX-YFCO-1726-SM-4W21S 22.2
GTEX-X261-2326-SM-4PQYU 22.1
GTEX-QLQ7-1426-SM-4R1JX 21.4
GTEX-12C56-1426-SM-5FQSW 21.3
GTEX-12WSH-0326-SM-5GCNH 21.3
GTEX-P4QS-2126-SM-3NMCF 21.3
GTEX-144GN-1626-SM-5Q5BU 21.2
GTEX-Y8E4-2226-SM-5LU94 21.2
GTEX-YJ89-0626-SM-4TT3Z 21.2
GTEX-13O21-1226-SM-5J2MK 21.1
GTEX-RM2N-1326-SM-48FCW 21.0
GTEX-S3XE-1526-SM-4AD5A 21.0
GTEX-U3ZH-1526-SM-4DXV1 20.9
GTEX-QMRM-1526-SM-4R1K6 20.8
GTEX-XPT6-1626-SM-4B655 20.8
GTEX-11ONC-2226-SM-5HL6D 20.7
GTEX-U4B1-1526-SM-4DXSL 20.6
GTEX-R55C-1426-SM-48FED 20.5
GTEX-OOBJ-2126-SM-3NB1N 20.3
GTEX-V955-1926-SM-4KL1L 20.2
GTEX-OXRL-2126-SM-3NM98 19.8
GTEX-13OVH-0726-SM-5N9BU 19.6
GTEX-ZZ64-1126-SM-5GZXY 19.5
GTEX-11O72-0726-SM-5P9GO 19.4
GTEX-ZQUD-2026-SM-51MSM 19.4
GTEX-OIZH-2126-SM-3NB1P 19.3
GTEX-SUCS-1326-SM-4DM5T 19.3
GTEX-13O61-2026-SM-5J2M6 19.2
GTEX-U3ZM-1626-SM-4DXSK 19.1
GTEX-ZT9X-1426-SM-5DUX1 19.1
GTEX-139T6-1226-SM-5IFFC 18.4
GTEX-12696-0226-SM-5EGL3 18.3
GTEX-RWSA-2426-SM-47JXR 18.2
GTEX-12WSI-2126-SM-5GCMV 18.1
GTEX-SNMC-1026-SM-4DM7K 18.0
GTEX-ZDYS-1326-SM-5IJFF 18.0
GTEX-ZT9W-2226-SM-57WFU 18.0
GTEX-SNOS-1126-SM-4DM67 17.9
GTEX-VJYA-1426-SM-4KL1Y 17.7
GTEX-XMK1-2026-SM-4B65K 17.6
GTEX-Y5V6-1726-SM-4VDSZ 17.6
GTEX-OHPM-2126-SM-3LK75 17.5
GTEX-R55E-0726-SM-48FCZ 17.5
GTEX-ZA64-1626-SM-5CVME 17.4
GTEX-11P82-1526-SM-5BC5M 17.2
GTEX-11TT1-2226-SM-5GU6B 17.2
GTEX-YEC4-1526-SM-4W1YU 17.1
GTEX-ZV7C-2026-SM-5NQ8F 17.1
GTEX-T5JC-0726-SM-4DM55 17.0
GTEX-11WQK-2826-SM-5EQKH 16.9
GTEX-1399Q-2826-SM-5IJEZ 16.8
GTEX-ZUA1-2726-SM-59HLJ 16.8
GTEX-ZVZP-2226-SM-57WBF 16.7
GTEX-Q2AH-1526-SM-48TZG 16.5
GTEX-111CU-1726-SM-5EGHM 16.3
GTEX-111FC-1926-SM-5GZYC 16.3
GTEX-13NZB-2026-SM-5MR4M 16.3
GTEX-XAJ8-1326-SM-47JYT 16.1
GTEX-11EQ8-1426-SM-5EGJR 16.0
GTEX-WOFM-1126-SM-4OOSB 16.0
GTEX-12WSL-2326-SM-5DUXQ 15.9
GTEX-S33H-0126-SM-4AD62 15.8
GTEX-X5EB-2026-SM-4E3KA 15.8
GTEX-13FLW-2126-SM-5N9FD 15.7
GTEX-14753-0626-SM-5Q5CY 15.6
GTEX-PW2O-1426-SM-48TCD 15.5
GTEX-1339X-1926-SM-5PNVP 15.3
GTEX-TKQ1-0926-SM-4DXU2 15.2
GTEX-111YS-2026-SM-5EGGL 15.1
GTEX-ZAB5-2426-SM-5CVMW 15.1
GTEX-YEC3-1726-SM-5IFIK 15.0
GTEX-13111-1526-SM-5EGJX 14.9
GTEX-13NYB-2226-SM-5MR58 14.9
GTEX-S4Q7-1226-SM-4AD5I 14.9
GTEX-XBED-2026-SM-4AT5D 14.8
GTEX-11EQ9-1926-SM-5PNVV 14.6
GTEX-V1D1-2126-SM-4JBH4 14.6
GTEX-131XE-0426-SM-5IJF4 14.3
GTEX-U8T8-1126-SM-4DXUE 14.2
GTEX-11DXZ-2126-SM-59881 14.0
GTEX-WVLH-2626-SM-4MVNV 14.0
GTEX-XBEC-0126-SM-4GIDT 13.9
GTEX-11EI6-2226-SM-5EGJM 13.8
GTEX-1212Z-0326-SM-5FQSJ 13.7
GTEX-WH7G-1926-SM-4LVMM 13.7
GTEX-Q2AI-1226-SM-48U14 13.5
GTEX-S95S-1126-SM-4B64E 13.5
GTEX-13NZA-2526-SM-5IJFX 13.3
GTEX-QV31-1126-SM-4R1K4 13.1
GTEX-11OF3-1826-SM-5987N 13.0
GTEX-139TT-2226-SM-5LZWO 13.0
GTEX-147JS-0126-SM-5S2TW 12.9
GTEX-T8EM-0126-SM-4DM5R 12.8
GTEX-13OW5-2526-SM-5L3I1 12.7
GTEX-TKQ2-1526-SM-4DXUN 12.7
GTEX-11NSD-1026-SM-5N9BE 12.4
GTEX-11LCK-2326-SM-5HL53 12.3
GTEX-145MO-0126-SM-5S2QU 12.3
GTEX-144GL-0726-SM-5LU4P 12.2
GTEX-XLM4-1526-SM-4AT6D 12.1
GTEX-S7SE-0326-SM-4AT5Q 12.0
GTEX-11GS4-2026-SM-5N9CP 11.9
GTEX-ZPU1-2126-SM-57WED 11.8
GTEX-ZVTK-0126-SM-57WDG 11.7
GTEX-Z93S-1726-SM-5HL8G 11.6
GTEX-ZYFC-0126-SM-5GIEH 11.6
GTEX-11NUK-2626-SM-5A5MB 11.5
GTEX-12ZZY-0126-SM-5LZV2 11.5
GTEX-U8XE-0126-SM-4E3I3 11.5
GTEX-WZTO-0326-SM-4PQYZ 11.5
GTEX-132QS-1226-SM-5P9GD 11.4
GTEX-S7PM-0626-SM-4AD4Q 11.2
GTEX-13OVL-0426-SM-5IFG6 10.6
GTEX-T6MN-2026-SM-4DM7L 10.6
GTEX-ZTSS-1526-SM-51MTC 10.5
GTEX-ZYT6-2726-SM-5GICP 10.4
GTEX-117XS-2026-SM-5GID1 10.0
GTEX-145MH-2326-SM-5O9AW 10.0
GTEX-UPJH-0126-SM-4IHLL 10.0
GTEX-OOBK-2126-SM-3LK5T 9.7
GTEX-RUSQ-2126-SM-47JXK 9.6
GTEX-13VXU-0726-SM-5J2O7 9.4
GTEX-QEG5-0126-SM-4R1JR 9.4
GTEX-13N1W-2626-SM-5IJEP 9.2
GTEX-139TS-1726-SM-5IJG5 8.8
GTEX-REY6-0126-SM-48FDT 8.8
GTEX-117YW-1526-SM-5EGGP 8.2
GTEX-Y111-2426-SM-4TT23 8.2
GTEX-P4QR-0226-SM-3NMCH 8.0
GTEX-QEG4-0126-SM-48TZE 8.0
GTEX-N7MS-0126-SM-3TW8O 7.9
GTEX-13O1R-0726-SM-5IJEI 7.8
GTEX-XQ3S-2726-SM-4BOP2 7.7
GTEX-11ZUS-2726-SM-5FQUA 7.4
GTEX-11NV4-1726-SM-5N9FC 7.3
GTEX-14ABY-0626-SM-5Q5C9 7.2
GTEX-144GM-0426-SM-5Q5C8 7.0
GTEX-WK11-0326-SM-4OOS6 7.0
GTEX-13FHP-2826-SM-5IJFW 6.4
GTEX-11WQC-2326-SM-5EQKE 5.6
GTEX-13112-0226-SM-5P9IV 5.4
GTEX-11TUW-2226-SM-5EQL9 4.8
GTEX-111VG-1926-SM-5GIDO 2.7
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

47.6

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 47.6
FF:10026-101D8 34,53,86 years, male 61.9
FF:10096-102C6 14-64 years, male 33.3

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