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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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TISSUE ATLAS PRIMARY DATA PLACENTA

GENE/PROTEIN

Antibody validation


Dictionary

Placenta

Tissue proteome

Placenta

PLACENTA - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:0.0TPM
FANTOM5:0.0Tags Per Million

PLACENTA - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Decidual cells:Medium
Trophoblastic cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA014738

 

Antibody CAB004678

 

Decidual cells

Low   Medium  

Trophoblastic cells

High   Medium  
   
   
   

PLACENTA - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

0.0

overview Female, age N/A
Sample 1
TPM: 0.0
Cell types%
Trophoblastic cells: 55
Endothelial cells: 25
Other cell types: 20
overview Female, age 28
Sample 2
TPM: 0.3
Cell types%
Trophoblastic cells: 45
Endothelial cells: 5
Other cell types: 50
overview Female, age 39
Sample 3
TPM: 0.0
Cell types%
Trophoblastic cells: 45
Endothelial cells: 35
Other cell types: 20
overview Female, age 31
Sample 4
TPM: 0.0
Cell types%
Trophoblastic cells: 40
Endothelial cells: 35
Other cell types: 25
overview Female, age 30
Sample 5
TPM: 0.0
Cell types%
Trophoblastic cells: 55
Endothelial cells: 20
Other cell types: 25
overview Female, age 31
Sample 6
TPM: 0.0
Cell types%
Trophoblastic cells: 50
Endothelial cells: 20
Other cell types: 30
overview Female, age 37
Sample 7
TPM: 0.1
Cell types%
Trophoblastic cells: 50
Endothelial cells: 20
Other cell types: 30
overview Female, age 36
Sample 8
TPM: 0.0
Cell types%
Trophoblastic cells: 45
Endothelial cells: 10
Other cell types: 45

PLACENTA - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

No GTEx RNA-seq analysis found for this gene / tissue


PLACENTA - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

0.0

FANTOM5 sample id

Sample description

Tags Per Million

Placenta
Tags Per Million: 0.0
FF:10021-101D3 female 0.0

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The Human Protein Atlas project is funded
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