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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 404.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 427.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 350.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 500.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 435.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 340.0
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 406.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 787.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 226.4
Min RPKM: 0.6
Std RPKM: 47.7
Median RPKM: 88.7
GTEX-13VXU-0926-SM-5IFFH
226.4
GTEX-U3ZN-0226-SM-3DB8D
206.5
GTEX-11OF3-0726-SM-5BC4Z
188.5
GTEX-13FTZ-0726-SM-5IFFY
182.8
GTEX-147JS-1126-SM-5RQIW
173.6
GTEX-11WQC-0726-SM-5EQMR
166.5
GTEX-SJXC-1226-SM-4DM78
158.3
GTEX-ZF2S-3026-SM-4WWCH
155.6
GTEX-T6MN-1226-SM-3NMA5
155.2
GTEX-ZVT3-1626-SM-5GU66
152.8
GTEX-1399R-1226-SM-5P9GF
151.1
GTEX-14DAQ-1726-SM-5S2R2
149.0
GTEX-ZYT6-0626-SM-5E45V
148.3
GTEX-131YS-1626-SM-5HL6C
146.3
GTEX-11NUK-1226-SM-5P9GM
145.9
GTEX-Y5V5-0926-SM-4VBPZ
143.8
GTEX-1399T-0826-SM-5IFES
143.0
GTEX-11DXY-0526-SM-5EGGQ
140.7
GTEX-YECK-1926-SM-4W21H
139.5
GTEX-13112-1426-SM-5EGH8
136.4
GTEX-RN64-1826-SM-48FDV
134.2
GTEX-RNOR-1426-SM-48FDJ
133.6
GTEX-ZPU1-0826-SM-57WG2
132.5
GTEX-12WSI-0226-SM-5GCNA
131.3
GTEX-QEG4-1826-SM-4R1JN
129.9
GTEX-13OW6-2626-SM-5IFF2
129.7
GTEX-145LU-1326-SM-5LU9N
125.4
GTEX-13SLX-1226-SM-5S2Q6
125.0
GTEX-1212Z-0226-SM-59HLF
122.8
GTEX-11ZVC-0726-SM-5FQT9
119.6
GTEX-145MF-0826-SM-5QGQA
117.1
GTEX-Q2AG-1126-SM-48U1P
115.3
GTEX-WZTO-0626-SM-4PQYY
114.4
GTEX-QESD-2026-SM-447BI
113.6
GTEX-11DXZ-0126-SM-5EGGY
112.0
GTEX-11NV4-1326-SM-5HL6V
111.5
GTEX-11ZTS-1426-SM-5EQMM
111.0
GTEX-139TS-1426-SM-5IFJD
110.8
GTEX-132NY-0926-SM-5P9G3
108.3
GTEX-13NYB-1026-SM-5IFH3
108.0
GTEX-TKQ2-1726-SM-4DXUP
104.1
GTEX-12WSD-1426-SM-5GCN9
102.3
GTEX-X3Y1-2726-SM-4PQZH
102.2
GTEX-PX3G-0826-SM-48TZS
100.3
GTEX-139TU-0826-SM-5IJFG
99.6
GTEX-R53T-0326-SM-48FEC
98.5
GTEX-14AS3-0126-SM-5Q5F4
98.0
GTEX-Y5LM-0426-SM-4VBRO
98.0
GTEX-131XH-0626-SM-5LZWH
96.6
GTEX-13N2G-0926-SM-5IFGJ
95.7
GTEX-WYVS-1926-SM-4PQZ2
94.8
GTEX-ZZPU-0426-SM-5GZYH
93.9
GTEX-13PVR-0126-SM-5S2PY
93.4
GTEX-UPK5-1426-SM-4JBHH
93.1
GTEX-14E1K-0326-SM-5S2PE
92.8
GTEX-OOBJ-0826-SM-3NB2K
91.6
GTEX-13FLV-0326-SM-5N9DJ
90.9
GTEX-QV44-0326-SM-4R1KD
90.7
GTEX-12WSM-0726-SM-5GCOW
89.4
GTEX-S33H-1626-SM-4AD68
88.7
GTEX-RM2N-1926-SM-48FCU
88.2
GTEX-Z9EW-0426-SM-5CVM9
87.4
GTEX-XOTO-0826-SM-4B65O
86.2
GTEX-11ZUS-2526-SM-59872
85.7
GTEX-1269C-0626-SM-5FQSS
83.9
GTEX-11EQ9-0526-SM-5A5JZ
83.7
GTEX-ZF29-2026-SM-4WWB7
83.4
GTEX-X261-1726-SM-4PQYT
82.7
GTEX-ZAB5-0426-SM-5CVMI
80.8
GTEX-12KS4-1326-SM-5LUB3
78.4
GTEX-14753-1626-SM-5NQ9L
77.5
GTEX-14A5I-1726-SM-5QGQ5
75.0
GTEX-ZVT4-0626-SM-5E45T
74.7
GTEX-RU72-1426-SM-46MUF
74.6
GTEX-13FTW-1126-SM-5J2NV
74.0
GTEX-XBEC-1526-SM-4AT68
68.9
GTEX-11GSP-0626-SM-5986T
66.6
GTEX-UPIC-0926-SM-4IHLV
66.6
GTEX-YB5E-0326-SM-5IFHU
66.2
GTEX-147F4-1426-SM-5LUA8
65.5
GTEX-X4EO-1126-SM-4QARQ
64.6
GTEX-S4Z8-0526-SM-4AD4T
62.6
GTEX-12ZZZ-1326-SM-59HKW
60.7
GTEX-RWSA-1426-SM-47JXA
59.1
GTEX-Q734-0326-SM-48U15
57.1
GTEX-YEC4-0826-SM-5P9FV
56.4
GTEX-RTLS-1326-SM-46MUN
55.6
GTEX-YFC4-1526-SM-5IFJS
54.1
GTEX-VUSG-0126-SM-4KL1X
51.0
GTEX-WFON-1726-SM-4LVMQ
51.0
GTEX-ZVP2-0626-SM-51MSO
51.0
GTEX-13NZB-0626-SM-5IFH6
48.0
GTEX-P78B-1326-SM-3P611
46.1
GTEX-145MO-2326-SM-5NQ9K
45.9
GTEX-13O3O-1826-SM-5IFGW
42.9
GTEX-REY6-1226-SM-48FDR
38.8
GTEX-13NZ9-1326-SM-5MR3V
37.7
GTEX-12696-0826-SM-5EGGE
36.8
GTEX-13QJC-0726-SM-5RQJK
36.2
GTEX-QEL4-1226-SM-447A4
35.0
GTEX-146FH-1526-SM-5NQBU
34.9
GTEX-13113-1326-SM-5GCOI
31.0
GTEX-12WSL-0226-SM-5CVMJ
28.5
GTEX-WQUQ-1926-SM-4OOSA
27.2
GTEX-UTHO-2426-SM-4JBHD
26.0
GTEX-1497J-0726-SM-5Q5D1
23.8
GTEX-13N11-0926-SM-5IJG2
22.7
GTEX-X4EP-1026-SM-4QAS5
21.4
GTEX-144GM-1326-SM-5LU5E
19.1
GTEX-139YR-0226-SM-5IFEM
18.0
GTEX-ZYY3-0626-SM-5NQ6W
16.9
GTEX-12WSG-0626-SM-5FQTQ
11.2
GTEX-ZAB4-0826-SM-5LU9D
11.0
GTEX-ZTPG-1426-SM-51MT3
9.4
GTEX-S32W-1926-SM-4AD63
9.2
GTEX-131XE-0326-SM-5LZVO
8.8
GTEX-X4XY-1626-SM-46MVN
6.4
GTEX-QDVN-0826-SM-48TZ2
5.3
GTEX-14C38-1526-SM-5RQJ7
0.6
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LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.