We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SLC2A2
  • premium

    TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA LIVER

GENE/PROTEIN

Antibody validation


Dictionary

Liver

Tissue proteome

Liver

LIVER - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:432.5TPM
GTEx:87.4RPKM
FANTOM5:693.2Tags Per Million

LIVER - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Bile duct cells:Not detected
Hepatocytes:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA028997

 

Antibody CAB010444

 

Bile duct cells

Not detected   Not detected  

Hepatocytes

High   High  
   
   
   

LIVER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

432.5

N/A Female, age 60
Sample 1
TPM: 316.4
overview Male, age 54
Sample 2
TPM: 356.8
Cell types%
Hepatocytes: 80
Fibroblasts: 15
Other cell types: 5
overview Male, age 74
Sample 3
TPM: 404.9
Cell types%
Hepatocytes: 85
Fibroblasts: 5
Other cell types: 10
overview Female, age 62
Sample 4
TPM: 427.1
Cell types%
Hepatocytes: 70
Fibroblasts: 10
Other cell types: 20
overview Male, age 78
Sample 5
TPM: 350.5
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Male, age 53
Sample 6
TPM: 500.5
Cell types%
Hepatocytes: 80
Fibroblasts: 5
Other cell types: 15
overview Male, age 77
Sample 7
TPM: 435.9
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Female, age 72
Sample 8
TPM: 340.0
Cell types%
Hepatocytes: 50
Fibroblasts: 10
Other cell types: 40
overview Male, age 70
Sample 9
TPM: 406.1
Cell types%
Hepatocytes: 65
Fibroblasts: 10
Other cell types: 25
overview Female, age 23
Sample 10
TPM: 787.2
Cell types%
Hepatocytes: 70
Fibroblasts: 5
Other cell types: 25

LIVER - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

87.4

GTEx sample id

RPKM

 

Liver

Liver
RPKM: 87.4
Samples: 119

Max RPKM: 226.4
Min RPKM: 0.6
Std RPKM: 47.7
Median RPKM: 88.7
GTEX-13VXU-0926-SM-5IFFH 226.4
GTEX-U3ZN-0226-SM-3DB8D 206.5
GTEX-11OF3-0726-SM-5BC4Z 188.5
GTEX-13FTZ-0726-SM-5IFFY 182.8
GTEX-147JS-1126-SM-5RQIW 173.6
GTEX-11WQC-0726-SM-5EQMR 166.5
GTEX-SJXC-1226-SM-4DM78 158.3
GTEX-ZF2S-3026-SM-4WWCH 155.6
GTEX-T6MN-1226-SM-3NMA5 155.2
GTEX-ZVT3-1626-SM-5GU66 152.8
GTEX-1399R-1226-SM-5P9GF 151.1
GTEX-14DAQ-1726-SM-5S2R2 149.0
GTEX-ZYT6-0626-SM-5E45V 148.3
GTEX-131YS-1626-SM-5HL6C 146.3
GTEX-11NUK-1226-SM-5P9GM 145.9
GTEX-Y5V5-0926-SM-4VBPZ 143.8
GTEX-1399T-0826-SM-5IFES 143.0
GTEX-11DXY-0526-SM-5EGGQ 140.7
GTEX-YECK-1926-SM-4W21H 139.5
GTEX-13112-1426-SM-5EGH8 136.4
GTEX-RN64-1826-SM-48FDV 134.2
GTEX-RNOR-1426-SM-48FDJ 133.6
GTEX-ZPU1-0826-SM-57WG2 132.5
GTEX-12WSI-0226-SM-5GCNA 131.3
GTEX-QEG4-1826-SM-4R1JN 129.9
GTEX-13OW6-2626-SM-5IFF2 129.7
GTEX-145LU-1326-SM-5LU9N 125.4
GTEX-13SLX-1226-SM-5S2Q6 125.0
GTEX-1212Z-0226-SM-59HLF 122.8
GTEX-11ZVC-0726-SM-5FQT9 119.6
GTEX-145MF-0826-SM-5QGQA 117.1
GTEX-Q2AG-1126-SM-48U1P 115.3
GTEX-WZTO-0626-SM-4PQYY 114.4
GTEX-QESD-2026-SM-447BI 113.6
GTEX-11DXZ-0126-SM-5EGGY 112.0
GTEX-11NV4-1326-SM-5HL6V 111.5
GTEX-11ZTS-1426-SM-5EQMM 111.0
GTEX-139TS-1426-SM-5IFJD 110.8
GTEX-132NY-0926-SM-5P9G3 108.3
GTEX-13NYB-1026-SM-5IFH3 108.0
GTEX-TKQ2-1726-SM-4DXUP 104.1
GTEX-12WSD-1426-SM-5GCN9 102.3
GTEX-X3Y1-2726-SM-4PQZH 102.2
GTEX-PX3G-0826-SM-48TZS 100.3
GTEX-139TU-0826-SM-5IJFG 99.6
GTEX-R53T-0326-SM-48FEC 98.5
GTEX-14AS3-0126-SM-5Q5F4 98.0
GTEX-Y5LM-0426-SM-4VBRO 98.0
GTEX-131XH-0626-SM-5LZWH 96.6
GTEX-13N2G-0926-SM-5IFGJ 95.7
GTEX-WYVS-1926-SM-4PQZ2 94.8
GTEX-ZZPU-0426-SM-5GZYH 93.9
GTEX-13PVR-0126-SM-5S2PY 93.4
GTEX-UPK5-1426-SM-4JBHH 93.1
GTEX-14E1K-0326-SM-5S2PE 92.8
GTEX-OOBJ-0826-SM-3NB2K 91.6
GTEX-13FLV-0326-SM-5N9DJ 90.9
GTEX-QV44-0326-SM-4R1KD 90.7
GTEX-12WSM-0726-SM-5GCOW 89.4
GTEX-S33H-1626-SM-4AD68 88.7
GTEX-RM2N-1926-SM-48FCU 88.2
GTEX-Z9EW-0426-SM-5CVM9 87.4
GTEX-XOTO-0826-SM-4B65O 86.2
GTEX-11ZUS-2526-SM-59872 85.7
GTEX-1269C-0626-SM-5FQSS 83.9
GTEX-11EQ9-0526-SM-5A5JZ 83.7
GTEX-ZF29-2026-SM-4WWB7 83.4
GTEX-X261-1726-SM-4PQYT 82.7
GTEX-ZAB5-0426-SM-5CVMI 80.8
GTEX-12KS4-1326-SM-5LUB3 78.4
GTEX-14753-1626-SM-5NQ9L 77.5
GTEX-14A5I-1726-SM-5QGQ5 75.0
GTEX-ZVT4-0626-SM-5E45T 74.7
GTEX-RU72-1426-SM-46MUF 74.6
GTEX-13FTW-1126-SM-5J2NV 74.0
GTEX-XBEC-1526-SM-4AT68 68.9
GTEX-11GSP-0626-SM-5986T 66.6
GTEX-UPIC-0926-SM-4IHLV 66.6
GTEX-YB5E-0326-SM-5IFHU 66.2
GTEX-147F4-1426-SM-5LUA8 65.5
GTEX-X4EO-1126-SM-4QARQ 64.6
GTEX-S4Z8-0526-SM-4AD4T 62.6
GTEX-12ZZZ-1326-SM-59HKW 60.7
GTEX-RWSA-1426-SM-47JXA 59.1
GTEX-Q734-0326-SM-48U15 57.1
GTEX-YEC4-0826-SM-5P9FV 56.4
GTEX-RTLS-1326-SM-46MUN 55.6
GTEX-YFC4-1526-SM-5IFJS 54.1
GTEX-VUSG-0126-SM-4KL1X 51.0
GTEX-WFON-1726-SM-4LVMQ 51.0
GTEX-ZVP2-0626-SM-51MSO 51.0
GTEX-13NZB-0626-SM-5IFH6 48.0
GTEX-P78B-1326-SM-3P611 46.1
GTEX-145MO-2326-SM-5NQ9K 45.9
GTEX-13O3O-1826-SM-5IFGW 42.9
GTEX-REY6-1226-SM-48FDR 38.8
GTEX-13NZ9-1326-SM-5MR3V 37.7
GTEX-12696-0826-SM-5EGGE 36.8
GTEX-13QJC-0726-SM-5RQJK 36.2
GTEX-QEL4-1226-SM-447A4 35.0
GTEX-146FH-1526-SM-5NQBU 34.9
GTEX-13113-1326-SM-5GCOI 31.0
GTEX-12WSL-0226-SM-5CVMJ 28.5
GTEX-WQUQ-1926-SM-4OOSA 27.2
GTEX-UTHO-2426-SM-4JBHD 26.0
GTEX-1497J-0726-SM-5Q5D1 23.8
GTEX-13N11-0926-SM-5IJG2 22.7
GTEX-X4EP-1026-SM-4QAS5 21.4
GTEX-144GM-1326-SM-5LU5E 19.1
GTEX-139YR-0226-SM-5IFEM 18.0
GTEX-ZYY3-0626-SM-5NQ6W 16.9
GTEX-12WSG-0626-SM-5FQTQ 11.2
GTEX-ZAB4-0826-SM-5LU9D 11.0
GTEX-ZTPG-1426-SM-51MT3 9.4
GTEX-S32W-1926-SM-4AD63 9.2
GTEX-131XE-0326-SM-5LZVO 8.8
GTEX-X4XY-1626-SM-46MVN 6.4
GTEX-QDVN-0826-SM-48TZ2 5.3
GTEX-14C38-1526-SM-5RQJ7 0.6
Show all

LIVER - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

693.2

FANTOM5 sample id

Sample description

Tags Per Million

Liver
Tags Per Million: 693.2
FF:10018-101C9 64,69,70 years, mixed 693.2

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.