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TISSUE ATLAS PRIMARY DATA ESOPHAGUS

GENE/PROTEIN

Antibody validation


Dictionary

Esophagus

Tissue proteome

Esophagus

ESOPHAGUS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:9.0TPM
GTEx:9.5RPKM
FANTOM5:5.2Tags Per Million

ESOPHAGUS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Squamous epithelial cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB005862

 

Squamous epithelial cells

Medium  
 
 
 

ESOPHAGUS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

9.0

overview Female, age 70
Sample 1
TPM: 10.2
Cell types%
Squamous epithelial cells: 35
Smooth muscle cells: 15
Skeletal muscle cells: 5
Other cell types: 45
overview Male, age 38
Sample 2
TPM: 6.2
Cell types%
Squamous epithelial cells: 60
Smooth muscle cells: 20
Other cell types: 20
overview Male, age 76
Sample 3
TPM: 10.6
Cell types%
Squamous epithelial cells: 45
Smooth muscle cells: 15
Other cell types: 40

ESOPHAGUS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

9.5

GTEx sample id

RPKM

 

Esophagus - Mucosa

Esophagus - Mucosa
RPKM: 9.5
Samples: 286

Max RPKM: 32.8
Min RPKM: 1.1
Std RPKM: 5
Median RPKM: 8.5
GTEX-133LE-0626-SM-5IFFJ 32.8
GTEX-RU72-0726-SM-46MUW 30.8
GTEX-TMMY-1126-SM-4DXSX 26.8
GTEX-Y111-1626-SM-57WCY 26.0
GTEX-XGQ4-1526-SM-4AT6H 24.2
GTEX-ZTX8-0226-SM-5E44D 23.3
GTEX-WFJO-0826-SM-4LVM5 22.4
GTEX-RUSQ-0826-SM-47JWW 22.0
GTEX-144GO-2726-SM-5O9A2 21.9
GTEX-XMK1-1326-SM-4B65Q 20.8
GTEX-12WSL-1526-SM-5GCP8 20.7
GTEX-1497J-2726-SM-5SI9W 20.7
GTEX-139UW-1126-SM-5IJEJ 20.6
GTEX-146FH-1726-SM-5QGQ2 20.1
GTEX-12ZZW-1726-SM-5DUVD 19.8
GTEX-UPIC-1026-SM-4IHLT 19.2
GTEX-Y8E4-1726-SM-5LU9G 19.0
GTEX-146FQ-1026-SM-5LU8I 18.9
GTEX-13PVQ-1726-SM-5IFF3 18.3
GTEX-11EMC-2226-SM-5A5JW 17.8
GTEX-Y5V6-1026-SM-4VBS2 17.5
GTEX-ZT9X-0526-SM-5GCOP 17.5
GTEX-YFC4-1226-SM-5LU9R 17.4
GTEX-QEG5-1426-SM-447AS 17.2
GTEX-R55E-1326-SM-48FCR 17.2
GTEX-111YS-0926-SM-5EGGI 16.9
GTEX-11DXX-1126-SM-5GZZK 16.7
GTEX-131XF-0826-SM-5GICG 16.2
GTEX-11LCK-1726-SM-5S2OQ 16.1
GTEX-144FL-2726-SM-5O98Z 16.1
GTEX-13X6H-1326-SM-5LU42 15.8
GTEX-R45C-1226-SM-48FEE 15.8
GTEX-WK11-1026-SM-4OOS8 15.8
GTEX-11EM3-0826-SM-5N9CC 15.6
GTEX-UPK5-1226-SM-4IHL8 15.6
GTEX-Y8LW-0726-SM-5IFI1 15.6
GTEX-P78B-1026-SM-3NMC4 15.2
GTEX-1399U-1026-SM-5J1OC 14.5
GTEX-13CF3-1626-SM-5IFG9 14.5
GTEX-S7SF-0926-SM-4AD4M 14.4
GTEX-ZYT6-1126-SM-5GZYR 14.2
GTEX-Y3I4-1226-SM-4TT8N 14.1
GTEX-14E6E-0726-SM-5S2R3 13.9
GTEX-R55D-1126-SM-48FEB 13.8
GTEX-WFG8-1226-SM-4V6EI 13.6
GTEX-ZYY3-1526-SM-5SIA9 13.5
GTEX-11DYG-1326-SM-5N9DO 13.4
GTEX-13NZB-1226-SM-5J2MW 13.4
GTEX-13O1R-1326-SM-5IJF5 13.4
GTEX-RNOR-1226-SM-48FDQ 13.3
GTEX-11TT1-0526-SM-5P9JO 13.1
GTEX-RU1J-0326-SM-46MUM 12.9
GTEX-T2IS-0826-SM-4DM6L 12.9
GTEX-QEG4-0726-SM-4R1JL 12.8
GTEX-ZDYS-0826-SM-4WWCR 12.8
GTEX-11NUK-1326-SM-5P9GN 12.6
GTEX-TSE9-1226-SM-4DXTM 12.6
GTEX-S32W-0926-SM-4AD5X 12.5
GTEX-Z9EW-0526-SM-5HL8S 12.5
GTEX-T5JW-1326-SM-4DM5G 12.4
GTEX-V955-1126-SM-4JBH3 12.4
GTEX-11ONC-1526-SM-5GU6S 12.3
GTEX-13111-0826-SM-5LZV3 12.3
GTEX-144GN-0626-SM-5O9B2 12.2
GTEX-XQ3S-1126-SM-4BOPK 12.2
GTEX-ZUA1-1226-SM-5NQ6O 12.2
GTEX-13U4I-1126-SM-5LU3S 12.1
GTEX-13FH7-0526-SM-5IJF8 12.0
GTEX-ZGAY-1126-SM-4WWBS 12.0
GTEX-ZYWO-1026-SM-5E45U 12.0
GTEX-WQUQ-1626-SM-4OOSH 11.9
GTEX-13X6K-2126-SM-5O9D4 11.8
GTEX-X4EO-1226-SM-4QARR 11.8
GTEX-PSDG-1326-SM-48TD2 11.7
GTEX-S33H-0826-SM-4AD5Y 11.7
GTEX-X15G-0826-SM-4PQZD 11.6
GTEX-Y5LM-1026-SM-4VDSQ 11.5
GTEX-YEC3-2526-SM-4YCDN 11.4
GTEX-11GSP-1826-SM-5N9DQ 11.3
GTEX-Q2AI-0626-SM-48TZU 11.2
GTEX-TKQ1-0326-SM-4DXSM 11.2
GTEX-X3Y1-1326-SM-4PQZB 11.2
GTEX-145MF-1426-SM-5O9B6 11.1
GTEX-11I78-1526-SM-5A5K7 10.9
GTEX-1211K-0926-SM-5FQTL 10.9
GTEX-13OVG-0626-SM-5IFEP 10.9
GTEX-QESD-0826-SM-47J4G 10.9
GTEX-RM2N-0726-SM-48FD5 10.9
GTEX-11DZ1-2026-SM-5A5KG 10.8
GTEX-1212Z-2126-SM-5FQTM 10.8
GTEX-11NSD-1126-SM-5N9BQ 10.7
GTEX-ZZ64-0226-SM-5E44X 10.7
GTEX-QEL4-1426-SM-447AC 10.6
GTEX-QLQ7-0926-SM-447BC 10.5
GTEX-14BIN-2726-SM-5RQIE 10.4
GTEX-X4LF-0626-SM-4QASB 10.4
GTEX-ZXES-1126-SM-5GZXN 10.3
GTEX-111CU-0726-SM-5GZYD 10.2
GTEX-P4QS-0626-SM-3NMD1 10.2
GTEX-PVOW-1626-SM-48TC9 10.2
GTEX-QVUS-0626-SM-447CC 10.2
GTEX-SUCS-0726-SM-4DM7J 10.2
GTEX-U3ZH-1026-SM-4DXUZ 10.1
GTEX-U3ZM-0526-SM-4DXTB 10.1
GTEX-WVLH-1426-SM-4MVNX 10.1
GTEX-139T6-0626-SM-5IFF9 10.0
GTEX-WFG7-1126-SM-4LMK3 10.0
GTEX-Y3IK-1126-SM-51MSV 10.0
GTEX-ZF3C-1626-SM-4WWB4 10.0
GTEX-ZE9C-1126-SM-4WWBD 9.9
GTEX-139TU-1226-SM-5J2NL 9.8
GTEX-145LS-1826-SM-5LUAZ 9.8
GTEX-13OVJ-1226-SM-5L3HA 9.7
GTEX-145MO-1426-SM-5Q5BS 9.7
GTEX-OXRP-0926-SM-48TC1 9.7
GTEX-11P81-0826-SM-5P9GR 9.6
GTEX-11TUW-1326-SM-5EQKV 9.6
GTEX-XXEK-0326-SM-4BRVV 9.6
GTEX-ZPU1-1426-SM-4WWFU 9.6
GTEX-ZVE2-1326-SM-5NQ94 9.6
GTEX-12WSA-1426-SM-5EGJU 9.5
GTEX-UJMC-0926-SM-4IHLK 9.4
GTEX-Y5V5-1626-SM-4VDSG 9.4
GTEX-13W3W-1626-SM-5LU35 9.3
GTEX-13O3Q-0826-SM-5IFGF 9.2
GTEX-SNMC-0526-SM-4DM69 9.2
GTEX-13W46-1926-SM-5J2MF 9.1
GTEX-S3XE-0926-SM-4AD4S 9.1
GTEX-WOFM-0626-SM-4OOS3 9.1
GTEX-12696-1326-SM-5FQTJ 9.0
GTEX-13FTW-1626-SM-5KM4N 9.0
GTEX-Q2AH-0826-SM-48TZN 8.9
GTEX-S95S-0426-SM-4B64I 8.9
GTEX-ZYVF-2226-SM-5GIDD 8.9
GTEX-13G51-0926-SM-5IFFU 8.8
GTEX-148VJ-1026-SM-5LU98 8.8
GTEX-OXRL-0626-SM-3NM9C 8.8
GTEX-Y114-0926-SM-4TT7J 8.8
GTEX-11DXY-1426-SM-5N9CN 8.7
GTEX-ZA64-0626-SM-5HL9O 8.7
GTEX-ZAB4-1126-SM-5HL86 8.7
GTEX-ZTPG-1626-SM-5DUX2 8.6
GTEX-11ZTS-2626-SM-5EGIC 8.5
GTEX-131YS-1426-SM-5IJF7 8.5
GTEX-OOBK-0625-SM-3LK5P 8.5
GTEX-PWN1-0626-SM-48TDT 8.5
GTEX-14BMU-0926-SM-5S2QB 8.4
GTEX-146FR-0426-SM-5SI97 8.3
GTEX-QV44-1126-SM-4R1KO 8.3
GTEX-R3RS-1326-SM-48FE7 8.3
GTEX-132Q8-1826-SM-5EGIY 8.2
GTEX-14DAQ-1426-SM-5RQJD 8.2
GTEX-QCQG-0626-SM-48U21 8.2
GTEX-VUSG-1226-SM-4KKZF 8.2
GTEX-XLM4-2326-SM-4TT2D 8.2
GTEX-ZT9W-1326-SM-51MTB 8.2
GTEX-XMD2-1326-SM-4YCET 8.1
GTEX-YECK-1626-SM-5IFHQ 8.1
GTEX-1399Q-1126-SM-5P9JA 8.0
GTEX-13D11-1926-SM-5IFGB 8.0
GTEX-13O21-0626-SM-5IJDI 8.0
GTEX-N7MT-0326-SM-48TDP 7.9
GTEX-XUJ4-1026-SM-4BOPB 7.9
GTEX-XYKS-1526-SM-4BRUP 7.9
GTEX-13FTX-0526-SM-5IFGS 7.8
GTEX-QLQW-0526-SM-4R1KS 7.8
GTEX-T6MO-0526-SM-4DM6R 7.8
GTEX-V1D1-1026-SM-4JBHE 7.7
GTEX-144GM-1426-SM-5LU31 7.6
GTEX-NPJ8-1926-SM-3MJGB 7.6
GTEX-P4PQ-0626-SM-3NMCU 7.6
GTEX-ZG7Y-1126-SM-4WWEZ 7.6
GTEX-ZYW4-1326-SM-5E45N 7.6
GTEX-11P82-0526-SM-5986P 7.5
GTEX-145LV-1326-SM-5S2QI 7.4
GTEX-132QS-1426-SM-5P9GE 7.3
GTEX-13S86-0826-SM-5SI6J 7.3
GTEX-145MN-1026-SM-5NQ9G 7.3
GTEX-13OW8-2326-SM-5L3I9 7.2
GTEX-RTLS-1126-SM-46MUQ 7.2
GTEX-W5WG-1626-SM-4LMKG 7.2
GTEX-1399S-1326-SM-5P9GH 7.1
GTEX-R55G-1026-SM-48FDI 7.1
GTEX-RVPV-0526-SM-47JYL 7.1
GTEX-YJ89-1526-SM-5P9IR 7.1
GTEX-14AS3-0626-SM-5QGQD 7.0
GTEX-RWS6-0826-SM-47JXF 7.0
GTEX-T5JC-1726-SM-4DM6U 7.0
GTEX-PLZ5-0926-SM-3TW8L 6.9
GTEX-U8XE-1726-SM-4E3IF 6.9
GTEX-RN64-1026-SM-48FDX 6.8
GTEX-S4P3-0426-SM-4AD56 6.8
GTEX-U4B1-0826-SM-4DXTW 6.8
GTEX-ZYFG-1126-SM-5GICY 6.8
GTEX-S341-0526-SM-4AD5U 6.7
GTEX-UJHI-0826-SM-4IHLM 6.7
GTEX-ZAB5-0926-SM-5CVMV 6.7
GTEX-11EQ9-0726-SM-5A5K2 6.6
GTEX-12ZZX-1326-SM-5DUWI 6.6
GTEX-U3ZN-1726-SM-4DXUQ 6.6
GTEX-WFON-0826-SM-4LVMI 6.6
GTEX-11ZU8-1526-SM-5EGHX 6.5
GTEX-OIZI-1426-SM-3NB1T 6.5
GTEX-WH7G-0926-SM-4LVMJ 6.5
GTEX-SNOS-0626-SM-4DM5F 6.4
GTEX-YF7O-0926-SM-5IFIF 6.4
GTEX-12WSD-1826-SM-5GCOA 6.3
GTEX-131XG-1026-SM-5GCMX 6.3
GTEX-147F3-0826-SM-5NQA7 6.3
GTEX-ZC5H-1326-SM-5HL7E 6.3
GTEX-ZQUD-0426-SM-57WFR 6.3
GTEX-12C56-1226-SM-5FQSU 6.2
GTEX-1122O-1726-SM-5GICM 6.1
GTEX-XUZC-0426-SM-4BOPE 6.1
GTEX-ZY6K-0626-SM-59HJL 6.1
GTEX-12KS4-0926-SM-5BC5S 5.8
GTEX-14E1K-1226-SM-5S2PD 5.8
GTEX-NFK9-1126-SM-3LK78 5.8
GTEX-X62O-2226-SM-46MW3 5.8
GTEX-XK95-1026-SM-4GIDV 5.8
GTEX-12WSK-1126-SM-5LZV8 5.7
GTEX-12ZZY-1426-SM-5N9EI 5.7
GTEX-WRHK-0526-SM-4MVOF 5.7
GTEX-11DXZ-1226-SM-5H11L 5.6
GTEX-139YR-1726-SM-5IFFK 5.6
GTEX-145LT-1126-SM-5LUA1 5.6
GTEX-145ME-0526-SM-5QGQV 5.6
GTEX-ZVP2-1326-SM-57WCE 5.5
GTEX-11VI4-0526-SM-5EQ48 5.4
GTEX-13RTK-0526-SM-5S2QF 5.4
GTEX-13FLV-1126-SM-5J2NO 5.3
GTEX-13PVR-1826-SM-5Q5CC 5.3
GTEX-XBED-1026-SM-48TCB 5.3
GTEX-ZVT2-1326-SM-5E45H 5.3
GTEX-OIZH-0626-SM-3NB1L 5.2
GTEX-PLZ4-1626-SM-3P618 5.2
GTEX-ZF2S-1226-SM-4WWAX 5.2
GTEX-117YW-1926-SM-5H121 5.1
GTEX-11XUK-0826-SM-5GU6P 5.1
GTEX-131XE-1426-SM-5HL7V 5.1
GTEX-1399R-0826-SM-5IJEL 5.1
GTEX-T8EM-0526-SM-4DM64 5.1
GTEX-VJYA-0726-SM-4KL1T 5.1
GTEX-13FHO-1726-SM-5IFGM 5.0
GTEX-PLZ6-0526-SM-3P61C 5.0
GTEX-XV7Q-1126-SM-4BRVS 5.0
GTEX-YB5E-0926-SM-4WWDQ 5.0
GTEX-14C38-2126-SM-5RQJO 4.9
GTEX-ZPCL-1426-SM-57WEC 4.9
GTEX-SE5C-1226-SM-4BRWV 4.8
GTEX-XBEW-1326-SM-4AT63 4.8
GTEX-XOTO-2126-SM-4B64U 4.8
GTEX-OIZG-1026-SM-3LK5X 4.7
GTEX-13QBU-1026-SM-5LU3R 4.6
GTEX-O5YV-1026-SM-3LK72 4.5
GTEX-R53T-1126-SM-48FD4 4.5
GTEX-XQ8I-1526-SM-4BOOH 4.5
GTEX-OXRN-1726-SM-3NM9B 4.4
GTEX-ZF29-1326-SM-4WWB6 4.4
GTEX-QDVJ-0726-SM-48U1W 4.3
GTEX-13OVI-2626-SM-5KM4T 4.2
GTEX-14ICL-0526-SM-5RQJ6 4.2
GTEX-PWCY-0726-SM-48TCS 4.2
GTEX-QDVN-1026-SM-48TZA 4.2
GTEX-WEY5-0926-SM-4LMI4 4.2
GTEX-13QJ3-1726-SM-5RQK9 4.0
GTEX-117YX-1626-SM-5GZZG 3.9
GTEX-12BJ1-1626-SM-5HL8Y 3.7
GTEX-OXRK-1326-SM-3NB1A 3.7
GTEX-ZZPT-1426-SM-5N9C5 3.7
GTEX-R55C-0826-SM-48FCL 3.6
GTEX-14H4A-1626-SM-5SI69 3.3
GTEX-REY6-1326-SM-48FDO 3.3
GTEX-TML8-1526-SM-4DXUX 3.3
GTEX-X585-1226-SM-46MW7 3.0
GTEX-Y9LG-0626-SM-4WWDH 3.0
GTEX-ZLV1-0526-SM-4WWD4 3.0
GTEX-11P7K-1326-SM-5BC5G 2.9
GTEX-P4QT-0626-SM-3NMCP 2.9
GTEX-X4XY-1726-SM-46MVO 2.9
GTEX-ZTSS-0626-SM-59867 2.6
GTEX-P4PP-0626-SM-3NM9X 2.0
GTEX-S4Q7-0626-SM-4AD5M 1.9
GTEX-14A6H-1326-SM-5NQBC 1.8
GTEX-13X6I-1026-SM-5LU4C 1.5
GTEX-132AR-2226-SM-5J2NT 1.1
Show all

ESOPHAGUS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

5.2

FANTOM5 sample id

Sample description

Tags Per Million

Esophagus
Tags Per Million: 5.2
FF:10015-101C6 68,74,75 years, mixed 5.2

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