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TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:18.7TPM
GTEx:21.3RPKM
FANTOM5:24.1Tags Per Million

SMALL INTESTINE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA009073

 

Glandular cells

Medium  
 
 
 

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

18.7

overview Male, age 65
Sample 1
TPM: 22.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 21.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 15.3
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 15.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

21.3

GTEx sample id

RPKM

 

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 21.3
Samples: 88

Max RPKM: 65.8
Min RPKM: 2.1
Std RPKM: 14.6
Median RPKM: 19.3
GTEX-Y9LG-1626-SM-5IFHM 65.8
GTEX-1122O-1326-SM-5H11F 62.0
GTEX-XUZC-1426-SM-4BRV3 54.6
GTEX-YF7O-1826-SM-5IFIU 54.6
GTEX-ZTSS-0926-SM-59865 51.1
GTEX-WQUQ-2426-SM-4MVNW 48.2
GTEX-ZVZP-1826-SM-5GZXB 47.3
GTEX-YB5E-1526-SM-5IFIE 43.8
GTEX-14DAR-1426-SM-5RQIR 41.5
GTEX-131XF-1326-SM-5GCMQ 40.9
GTEX-ZPCL-1726-SM-57WEO 39.3
GTEX-11DXX-1626-SM-5H11H 37.6
GTEX-XBED-1426-SM-4AT4G 36.5
GTEX-13D11-0726-SM-5LZZB 35.4
GTEX-11EQ9-1326-SM-5985X 35.0
GTEX-111YS-1426-SM-5GID8 34.4
GTEX-ZA64-1226-SM-5HL7B 33.6
GTEX-ZTX8-0526-SM-59HLD 33.6
GTEX-ZLV1-1126-SM-4WWBW 32.8
GTEX-145LT-1026-SM-5LU9O 30.4
GTEX-1399S-2026-SM-5KM4B 30.1
GTEX-X5EB-1626-SM-4E3IV 28.8
GTEX-Y114-1426-SM-4TT6W 28.1
GTEX-ZYWO-1526-SM-5SIAL 27.4
GTEX-YEC4-1726-SM-4W21E 27.3
GTEX-ZYFG-2026-SM-5E43Y 27.2
GTEX-13CF3-1226-SM-5LZXN 26.7
GTEX-13113-1226-SM-5EGHT 26.5
GTEX-13FTW-2026-SM-5IJE2 26.2
GTEX-133LE-1426-SM-5IFH1 26.1
GTEX-11I78-1126-SM-5A5K5 25.9
GTEX-XXEK-1026-SM-4BRUW 25.7
GTEX-13PL7-2626-SM-5IFH4 25.5
GTEX-XGQ4-1326-SM-4GIDU 25.0
GTEX-ZXES-1526-SM-5NQ95 24.8
GTEX-11DXZ-1326-SM-5H11X 24.1
GTEX-1399R-2026-SM-5K7WN 22.0
GTEX-ZTPG-2626-SM-57WFX 21.9
GTEX-14E6E-1626-SM-5RQI7 21.9
GTEX-ZZ64-0526-SM-5GZXM 21.3
GTEX-12BJ1-1926-SM-5HL9Z 21.1
GTEX-13FH7-1226-SM-5IJFK 21.1
GTEX-ZLFU-1526-SM-4WWBT 20.4
GTEX-11P7K-1626-SM-5GU63 19.4
GTEX-139T6-1026-SM-5IJGC 19.2
GTEX-ZPIC-2326-SM-57WDW 19.0
GTEX-XAJ8-0526-SM-47JYK 18.8
GTEX-WH7G-1626-SM-4LVMY 17.9
GTEX-11P82-0826-SM-5P9GU 17.1
GTEX-ZVP2-1726-SM-5GU5P 16.5
GTEX-ZEX8-1826-SM-57WBH 15.8
GTEX-WFG7-1726-SM-4LVME 13.9
GTEX-13RTK-0826-SM-5Q5C6 13.4
GTEX-Y3IK-1726-SM-4YCCR 12.9
GTEX-VJYA-0926-SM-4KL1N 12.7
GTEX-XMK1-1826-SM-4B66F 12.7
GTEX-13O21-1026-SM-5IJDU 12.1
GTEX-ZVT2-2126-SM-5NQ93 12.0
GTEX-139YR-2226-SM-5IFFW 11.8
GTEX-11NSD-1726-SM-5N9C3 11.5
GTEX-WFJO-0926-SM-4LVM2 11.4
GTEX-13111-1426-SM-5DUW3 9.6
GTEX-WEY5-1526-SM-4LMJF 9.4
GTEX-13O61-1326-SM-5KM31 9.2
GTEX-ZQUD-0926-SM-57WE3 9.0
GTEX-Z9EW-0926-SM-5CVMM 9.0
GTEX-11XUK-1426-SM-5EQMG 8.4
GTEX-WFG8-1626-SM-4LVMB 8.2
GTEX-111CU-1326-SM-5NQ8L 7.9
GTEX-11VI4-1626-SM-5EQKO 7.4
GTEX-1399U-2126-SM-5IFEZ 7.4
GTEX-117YX-0326-SM-5GICL 7.3
GTEX-1192X-2526-SM-59868 7.1
GTEX-X15G-1426-SM-4PQZK 7.1
GTEX-12WSK-1526-SM-5CVNO 7.0
GTEX-WRHK-1026-SM-4MVOD 6.8
GTEX-ZF2S-1726-SM-57WFT 6.2
GTEX-131XG-1726-SM-5LZUR 6.0
GTEX-ZQG8-2526-SM-57WEQ 5.9
GTEX-13QBU-1926-SM-5IJEW 5.8
GTEX-145ME-0926-SM-5O9AR 5.4
GTEX-13OVI-1926-SM-5IJCG 4.7
GTEX-UPK5-2026-SM-4JBIM 3.9
GTEX-VUSG-1726-SM-4KKZL 3.5
GTEX-ZC5H-2326-SM-4WAYT 3.4
GTEX-ZP4G-1626-SM-57WGD 3.1
GTEX-Y5LM-1626-SM-4VDTB 3.0
GTEX-148VJ-2226-SM-5NQ9M 2.1
Show all

SMALL INTESTINE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

24.1

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 24.1
FF:10024-101D6 15,40,85 years, mixed 24.1

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