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TISSUE ATLAS PRIMARY DATA STOMACH 1

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:21780.0TPM
GTEx:21251.0RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA045930

 

Glandular cells

High  
 
 
 

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA045930

 

Glandular cells

High  
 
 
 

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

21780.0

overview Female, age 33
Sample 1
TPM: 50045.1
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82
Sample 2
TPM: 2641.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71
Sample 3
TPM: 8202.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66
Sample 4
TPM: 26230.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

21251.0

GTEx sample id

RPKM

 

Stomach

Stomach
RPKM: 21251.0
Samples: 193

Max RPKM: 99791.2
Min RPKM: 0
Std RPKM: 20281.4
Median RPKM: 17342.2
GTEX-QLQW-0726-SM-447AA 99791.2
GTEX-R53T-1226-SM-48FCT 93970.3
GTEX-PX3G-1526-SM-48U11 83389.0
GTEX-12WSG-2026-SM-5FQUU 63607.2
GTEX-ZPU1-1626-SM-4WWB2 62144.9
GTEX-QV44-1226-SM-4R1KE 61778.0
GTEX-W5WG-1726-SM-4LMI5 59307.8
GTEX-Q734-1026-SM-48U16 58980.1
GTEX-13D11-2126-SM-5IFH2 57718.9
GTEX-QV31-0626-SM-447C5 56478.6
GTEX-ZV7C-1626-SM-5NQ7E 55974.2
GTEX-PWCY-0926-SM-48TD7 55792.5
GTEX-OXRK-1626-SM-3NB17 55777.8
GTEX-11GSP-2126-SM-5HL5E 53020.9
GTEX-1399R-1126-SM-5IFIO 52675.2
GTEX-PW2O-1226-SM-48TCH 51578.5
GTEX-XXEK-0826-SM-4BRWG 47922.2
GTEX-111CU-0926-SM-5EGIK 47508.9
GTEX-Y8LW-0826-SM-4WWDO 47488.4
GTEX-145MN-1326-SM-5NQ9S 46926.7
GTEX-WRHK-0626-SM-4MVOE 46887.9
GTEX-V955-1326-SM-4JBHR 46519.4
GTEX-ZDYS-1926-SM-5HL59 46254.8
GTEX-14BMU-1126-SM-5RQJ8 45945.7
GTEX-ZVT2-1626-SM-51MRC 45737.6
GTEX-QLQ7-0826-SM-447B3 45043.1
GTEX-ZVZP-1726-SM-5GZWY 44636.2
GTEX-T5JW-0926-SM-4DM5K 44098.4
GTEX-YFCO-0826-SM-5LUAG 43955.5
GTEX-RM2N-0826-SM-48FD3 43816.4
GTEX-11NSD-1426-SM-5HL67 43642.8
GTEX-ZF2S-1426-SM-57WET 43128.0
GTEX-O5YW-1526-SM-3MJGL 42738.7
GTEX-WEY5-1226-SM-4LMIQ 42637.7
GTEX-X15G-1126-SM-4PQZG 42612.9
GTEX-Y5V6-1326-SM-4VDTF 40988.8
GTEX-ZT9W-1526-SM-4YCDE 40167.3
GTEX-YJ8A-1526-SM-5P9FT 39662.3
GTEX-U3ZN-2026-SM-4DXUC 38903.5
GTEX-11EM3-1026-SM-5A5KL 38780.5
GTEX-13OW6-2526-SM-5IJEC 38723.1
GTEX-ZZ64-0426-SM-5E43F 38629.0
GTEX-NFK9-1526-SM-3LK7B 38405.5
GTEX-QMRM-1126-SM-447BN 37722.3
GTEX-T6MO-0726-SM-4DM58 36413.5
GTEX-13QBU-1126-SM-5LU44 36193.6
GTEX-11I78-1726-SM-5A5M3 35476.2
GTEX-145LT-1426-SM-5O9B3 34606.2
GTEX-WHWD-1426-SM-4OORU 34579.7
GTEX-ZLFU-1326-SM-4WWET 34330.8
GTEX-WFG7-1326-SM-4LMK1 33946.2
GTEX-12WSK-1426-SM-5CVNN 33653.5
GTEX-133LE-1326-SM-5IFGO 33645.8
GTEX-111YS-1126-SM-5GZYQ 33359.3
GTEX-XUJ4-1226-SM-4BOPD 33180.3
GTEX-11TT1-0726-SM-5GU5A 32843.1
GTEX-SUCS-0926-SM-4DM4Z 32787.7
GTEX-ZP4G-1226-SM-4WWCJ 32117.7
GTEX-OHPK-1526-SM-3MJGM 32096.8
GTEX-SNMC-0626-SM-4DM6H 31170.0
GTEX-XBED-1226-SM-4AT5V 30526.1
GTEX-ZQUD-0826-SM-57WDQ 30398.2
GTEX-ZA64-0826-SM-5HL9U 30325.8
GTEX-117YW-2226-SM-5N9DB 28678.7
GTEX-PWN1-1526-SM-48TDA 28661.0
GTEX-UJMC-1226-SM-4IHLI 28457.5
GTEX-13FTX-0726-SM-5N9BI 28273.3
GTEX-WFON-1126-SM-4LVMA 28248.9
GTEX-YEC4-1426-SM-5IFHS 28236.7
GTEX-ZYFG-1326-SM-5GICJ 28092.7
GTEX-Y5LM-1326-SM-5RQIS 27148.7
GTEX-144GM-1726-SM-5O9AS 26912.1
GTEX-13O21-0926-SM-5IFGT 26858.6
GTEX-Q2AH-1126-SM-48TZM 26821.2
GTEX-Y8E4-1526-SM-4WWDI 26493.7
GTEX-12696-1726-SM-5EQLH 26025.8
GTEX-S3XE-1026-SM-4AD4O 25451.1
GTEX-XUZC-0726-SM-4BOPH 25401.2
GTEX-1122O-1926-SM-5EGIQ 25056.4
GTEX-TMMY-1626-SM-4DXTY 24046.9
GTEX-ZZPU-1426-SM-5GZZ6 23953.1
GTEX-131XF-1226-SM-5HL8V 23838.1
GTEX-13FTW-1726-SM-5KM2B 23073.6
GTEX-SNOS-0826-SM-4DM5N 22226.1
GTEX-P78B-1826-SM-3P5YX 21556.6
GTEX-ZAB4-1526-SM-5CVN7 20003.0
GTEX-S95S-0826-SM-4B64N 19954.8
GTEX-QDVJ-1426-SM-48U1Y 19856.8
GTEX-Y3IK-1426-SM-4YCES 19661.1
GTEX-ZY6K-0726-SM-5A5L8 18470.4
GTEX-ZVT3-2126-SM-59HL2 18400.9
GTEX-P4PP-1526-SM-3P61M 18341.7
GTEX-132QS-1826-SM-5IFFN 18324.5
GTEX-144GN-1226-SM-5O991 18079.4
GTEX-S341-0626-SM-4AD5T 17760.3
GTEX-U4B1-1026-SM-4DXT1 17621.8
GTEX-PWOO-1226-SM-48TCO 17342.2
GTEX-13113-0726-SM-5LZUF 17069.8
GTEX-12BJ1-1726-SM-5HL9B 17048.9
GTEX-RWS6-0926-SM-47JXE 16776.2
GTEX-Q2AI-0826-SM-48TZO 15641.6
GTEX-QXCU-1926-SM-48FE4 15394.0
GTEX-139YR-1926-SM-5LZXM 15014.0
GTEX-13CF3-1926-SM-5K7WF 14760.1
GTEX-QCQG-0526-SM-48U2A 14577.0
GTEX-13FH7-1026-SM-5IJGF 14383.3
GTEX-QDVN-1226-SM-48TZ5 13629.0
GTEX-XBEW-1826-SM-4RTWX 13281.3
GTEX-131XG-1226-SM-5EGH9 13029.1
GTEX-13U4I-2526-SM-5SI8Z 12916.1
GTEX-ZVP2-1626-SM-5GU5D 12772.5
GTEX-V1D1-1726-SM-4JBHB 12257.4
GTEX-S4UY-1626-SM-4AD55 11647.2
GTEX-XQ8I-2026-SM-4BOOL 11524.6
GTEX-12WSD-2326-SM-59HKQ 11395.6
GTEX-S4Q7-0726-SM-4AD5F 11395.1
GTEX-ZXES-1426-SM-5NQ8S 11295.8
GTEX-ZLV1-0826-SM-4WWEQ 10467.9
GTEX-VJYA-1026-SM-4KL21 10297.7
GTEX-WFG8-1326-SM-4LVN3 10297.4
GTEX-T8EM-1226-SM-4DM5J 10099.7
GTEX-117YX-1026-SM-5H11V 9842.6
GTEX-Y9LG-1026-SM-5IFJN 9172.6
GTEX-139D8-2326-SM-5IFGE 8681.7
GTEX-WZTO-2126-SM-4PQYW 8652.8
GTEX-132AR-2426-SM-5IFFD 8311.8
GTEX-Y3I4-1626-SM-4TT7W 8291.6
GTEX-11DXX-1326-SM-5GIDZ 7949.4
GTEX-13S7M-1826-SM-5RQK6 7737.3
GTEX-13PVQ-2126-SM-5L3FW 7431.4
GTEX-POMQ-0826-SM-3P61H 7039.5
GTEX-XV7Q-1326-SM-4BRWM 5287.8
GTEX-1399S-1626-SM-5P9GI 4999.9
GTEX-145MO-2226-SM-5Q5BN 4212.4
GTEX-13RTK-0226-SM-5RQHR 4180.8
GTEX-11NUK-2426-SM-5BC4U 3603.7
GTEX-OOBJ-1526-SM-3NB1Q 2853.2
GTEX-ZYY3-1726-SM-5EGH3 2592.6
GTEX-SIU7-1426-SM-4BRWT 2498.6
GTEX-U8T8-1226-SM-4E3IH 1926.8
GTEX-WHPG-0426-SM-4M1XW 1795.4
GTEX-RTLS-2626-SM-46MUJ 1478.6
GTEX-11EI6-2426-SM-5PNVS 1415.1
GTEX-14BMV-2226-SM-5RQHX 936.6
GTEX-145ME-1026-SM-5O9B4 789.7
GTEX-T5JC-1926-SM-4DM6Q 622.0
GTEX-1211K-1426-SM-5FQTF 480.2
GTEX-146FH-2126-SM-5SI9U 470.9
GTEX-11EQ9-1226-SM-5987E 177.5
GTEX-ZYVF-2726-SM-5GID4 126.4
GTEX-13QJ3-2726-SM-5SI6L 94.1
GTEX-13O3Q-2126-SM-5KM4C 88.5
GTEX-UPK5-2126-SM-4JBJK 43.6
GTEX-P4QT-1526-SM-3NMCT 32.5
GTEX-PLZ6-0826-SM-3P61K 32.3
GTEX-12C56-0526-SM-5FQST 19.2
GTEX-13N1W-2026-SM-5K7YU 15.9
GTEX-R55D-1526-SM-48FEJ 14.0
GTEX-TKQ1-0526-SM-4DXTG 11.7
GTEX-R55C-1026-SM-48FCM 11.6
GTEX-1399U-1626-SM-5P9J3 10.8
GTEX-WH7G-1526-SM-4LVMX 9.4
GTEX-11P82-0726-SM-5PNYL 7.9
GTEX-TKQ2-0926-SM-4DXU5 7.8
GTEX-13OVI-2426-SM-5KM4J 7.1
GTEX-XAJ8-0326-SM-47JYI 6.4
GTEX-11P7K-1726-SM-5GU6F 6.3
GTEX-R55G-1126-SM-48FDG 6.1
GTEX-13O61-1126-SM-5L3FI 4.0
GTEX-P4PQ-1526-SM-3NMCK 3.5
GTEX-OIZH-1526-SM-3NB1J 3.2
GTEX-ZV6S-0926-SM-57WGB 3.0
GTEX-131XE-2226-SM-5PNYX 2.9
GTEX-XPVG-1526-SM-4B66C 2.9
GTEX-12WSJ-0926-SM-5P9JD 2.7
GTEX-146FR-2026-SM-5NQAI 2.7
GTEX-ZPIC-2026-SM-57WG3 2.3
GTEX-ZTX8-0426-SM-59HLG 2.3
GTEX-S4P3-0726-SM-4AD57 2.1
GTEX-UJHI-1026-SM-4IHJP 1.9
GTEX-S7SF-0626-SM-4AD4V 1.6
GTEX-S4Z8-1226-SM-4AD6W 1.3
GTEX-WFJO-1126-SM-4LVLZ 0.9
GTEX-UPIC-1826-SM-4IHKC 0.8
GTEX-ZE7O-3026-SM-51MS4 0.8
GTEX-13111-1226-SM-5GCNC 0.4
GTEX-Y114-1226-SM-4TT88 0.2
GTEX-1339X-1426-SM-5K7YO 0.1
GTEX-13X6H-1626-SM-5Q5CT 0.1
GTEX-YEC3-1426-101806-SM-5PNXX 0.1
GTEX-11VI4-0326-SM-5EQ6L 0.0
GTEX-11WQK-2626-SM-5EQ4K 0.0
GTEX-RU1J-0526-SM-46MUT 0.0
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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