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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:84.8TPM
GTEx:9.2RPKM
FANTOM5:7.5Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:Not detected
Myoepithelial cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA023861

 

Antibody HPA026536

 

Adipocytes

Not detected   Not detected  

Glandular cells

Not detected   Not detected  

Myoepithelial cells

High   Not detected  
   
   
   

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

84.8

overview Female, age 52
Sample 1
TPM: 21.4
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80
Sample 2
TPM: 34.4
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47
Sample 3
TPM: 254.8
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38
Sample 4
TPM: 28.5
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

9.2

GTEx sample id

RPKM

 

Breast - Mammary Tissue

Breast - Mammary Tissue
RPKM: 9.2
Samples: 214

Max RPKM: 52.2
Min RPKM: 1.2
Std RPKM: 6.5
Median RPKM: 7.4
GTEX-T5JC-2126-SM-32PMO 52.2
GTEX-14ABY-2126-SM-5QGQZ 32.6
GTEX-VUSG-2226-SM-4KKZO 29.2
GTEX-13NZB-2126-SM-5MR4Y 29.0
GTEX-11PRG-0826-SM-5EQ6A 28.8
GTEX-13CF2-2026-SM-5K7VI 27.7
GTEX-T6MN-0726-SM-32PML 26.8
GTEX-145LT-0726-SM-5S2VM 24.8
GTEX-ZVTK-0326-SM-51MRR 23.8
GTEX-13OW5-2226-SM-5L3HC 23.7
GTEX-QEG5-0726-SM-4R1JQ 21.8
GTEX-XUZC-1626-SM-4BRVP 21.2
GTEX-ZU9S-1926-SM-5NQBP 20.8
GTEX-11I78-2226-SM-5PNYA 19.3
GTEX-R55F-1726-SM-2TF4R 19.3
GTEX-ZVT2-1826-SM-5NQ8W 19.3
GTEX-11TT1-2126-SM-5GU5Y 19.0
GTEX-SIU7-1626-SM-4BRUK 18.7
GTEX-11P7K-0726-SM-5EGKX 17.5
GTEX-WYBS-0926-SM-3NM94 17.1
GTEX-11DXW-0626-SM-5N9ER 16.9
GTEX-13NZ9-1026-SM-5MR5K 16.9
GTEX-131YS-0626-SM-5EGKL 16.0
GTEX-WYJK-1326-SM-3NB2T 15.9
GTEX-UPK5-2326-SM-3P5Z8 15.8
GTEX-13FTY-2226-SM-5J1ND 15.7
GTEX-14AS3-1626-SM-5S2OY 15.7
GTEX-ZF2S-2026-SM-5E461 15.7
GTEX-11GS4-2126-SM-5A5KR 15.5
GTEX-13PL6-2926-SM-5L3I2 15.1
GTEX-147F4-2826-SM-5NQBN 14.9
GTEX-XMD1-0826-SM-4AT52 14.9
GTEX-ZC5H-2626-SM-5J2MG 14.8
GTEX-11EMC-2026-SM-5A5JV 14.7
GTEX-139TU-0626-SM-5KM3X 14.6
GTEX-Y111-2026-SM-4SOJA 14.4
GTEX-RU72-0626-SM-46MUI 14.3
GTEX-11EI6-0626-SM-5985T 14.2
GTEX-U3ZH-1426-SM-4DXSR 13.8
GTEX-ZTTD-1026-SM-51MRD 13.5
GTEX-X15G-1626-SM-3NMB3 13.2
GTEX-111YS-1926-SM-5GICC 13.0
GTEX-QEL4-2126-SM-447AE 12.7
GTEX-WYVS-1726-SM-3NMAY 12.4
GTEX-131XW-0726-SM-5EGK3 12.1
GTEX-ZY6K-1626-SM-5GZWV 12.0
GTEX-XOT4-0726-SM-4GIAW 11.9
GTEX-X4EP-2926-SM-3P5YQ 11.8
GTEX-T2YK-2226-SM-32QPT 11.7
GTEX-ZTX8-1226-SM-4YCE9 11.7
GTEX-13NZ8-0126-SM-5IJCT 11.5
GTEX-YFC4-1426-SM-5IFJG 11.5
GTEX-XUJ4-1926-SM-4BOOV 11.4
GTEX-ZAJG-0626-SM-5HL8X 11.3
GTEX-U412-1826-SM-4DXTJ 11.1
GTEX-ZXES-0826-SM-5E43C 11.1
GTEX-1269C-2426-SM-5FQSN 10.9
GTEX-Y3IK-2326-SM-4WWDT 10.9
GTEX-VJWN-0726-SM-3GIJ8 10.7
GTEX-ZLV1-1426-SM-4WWES 10.6
GTEX-R3RS-0626-SM-48FE1 10.5
GTEX-ZEX8-2226-SM-57WC6 10.5
GTEX-13N11-1726-SM-5J1OJ 10.4
GTEX-11WQC-1726-SM-5GU4W 10.3
GTEX-132Q8-1426-SM-5EGK7 10.3
GTEX-12ZZX-1126-SM-5EGKB 10.2
GTEX-TML8-1226-SM-32QON 10.2
GTEX-XBED-1626-SM-47JYN 10.1
GTEX-ZF29-1926-SM-5S2P1 10.1
GTEX-ZVE2-1226-SM-5NQ8R 10.1
GTEX-13O3O-0826-SM-5K7WE 10.0
GTEX-S341-1526-SM-4AD6K 10.0
GTEX-13QIC-2326-SM-5LU5N 9.9
GTEX-S4P3-1326-SM-4AD6V 9.9
GTEX-13W3W-1226-SM-5LU4H 9.8
GTEX-Q2AG-0326-SM-48U1O 9.8
GTEX-U3ZN-1926-SM-4DXSG 9.7
GTEX-13O3P-0826-SM-5L3DH 9.6
GTEX-1399U-1826-SM-5PNZ1 9.5
GTEX-Y8LW-1626-SM-5IFHX 9.5
GTEX-13FHO-0826-SM-5L3E8 9.4
GTEX-XMD2-0926-SM-4WWEF 9.3
GTEX-1192X-2326-SM-5987X 9.1
GTEX-ZV7C-1826-SM-5NQ83 9.1
GTEX-11EM3-1326-SM-5N9C6 8.9
GTEX-Y5LM-1726-SM-4VDSX 8.9
GTEX-11LCK-2426-SM-5HL5F 8.8
GTEX-1313W-0826-SM-5EQ4T 8.8
GTEX-139T8-0826-SM-5L3DE 8.8
GTEX-ZZPU-0626-SM-5E43T 8.6
GTEX-133LE-1726-SM-5K7VQ 8.5
GTEX-11O72-2126-SM-5N9FO 8.4
GTEX-13D11-1026-SM-5IJFB 8.2
GTEX-WRHU-0326-SM-3MJFY 8.2
GTEX-QDT8-0626-SM-48TYW 8.1
GTEX-XUW1-2326-SM-4BOO5 8.1
GTEX-RWS6-1926-SM-47JXY 8.0
GTEX-S33H-0326-SM-4AD6N 8.0
GTEX-ZF3C-2326-SM-5S2MZ 8.0
GTEX-1122O-1226-SM-5H113 7.9
GTEX-UJHI-1426-SM-3DB9C 7.9
GTEX-WI4N-1426-SM-3LK7H 7.9
GTEX-XMK1-1126-SM-4IHJ8 7.8
GTEX-145MO-0826-SM-5NQBL 7.7
GTEX-T2IS-1526-SM-32QPR 7.6
GTEX-T6MO-0326-SM-32QOK 7.6
GTEX-Y5V5-2126-SM-4WWFO 7.5
GTEX-11P81-1926-SM-5BC53 7.4
GTEX-1314G-1226-SM-5BC6D 7.3
GTEX-QVJO-1826-SM-447C9 7.3
GTEX-T5JW-2026-SM-4DM63 7.3
GTEX-13O3Q-2226-SM-5KM4O 7.2
GTEX-13OW8-0226-SM-5K7UP 7.1
GTEX-TMMY-0726-SM-33HBE 7.1
GTEX-WXYG-2226-SM-4E3IM 7.1
GTEX-WOFL-0826-SM-3MJG1 7.0
GTEX-146FH-0826-SM-5SI8T 6.9
GTEX-XYKS-1326-SM-4BRUN 6.9
GTEX-11NSD-0926-SM-5N9DR 6.7
GTEX-S4UY-0726-SM-4AD6X 6.6
GTEX-ZVZQ-0826-SM-51MRF 6.6
GTEX-XV7Q-2326-SM-4BRVZ 6.5
GTEX-RUSQ-2026-SM-4GIAK 6.4
GTEX-11OF3-1926-SM-59889 6.3
GTEX-11DZ1-0326-SM-5N9BN 6.2
GTEX-11ONC-2126-SM-5HL6E 6.1
GTEX-Y3I4-1526-SM-4TT7K 6.1
GTEX-SE5C-2126-SM-4BRUJ 6.0
GTEX-144GL-2026-SM-5LU3O 5.9
GTEX-ZYWO-2326-SM-5GZY4 5.9
GTEX-12WSB-0626-SM-59HJO 5.8
GTEX-13W46-0826-SM-5LU3H 5.8
GTEX-X4XY-0926-SM-4E3JD 5.8
GTEX-Y114-2026-SM-4TT7L 5.8
GTEX-1211K-1926-SM-5EQLB 5.7
GTEX-13113-1726-SM-5GCOO 5.7
GTEX-X261-0626-SM-3NMD9 5.7
GTEX-ZYFC-0826-SM-5E44K 5.7
GTEX-XQ3S-1326-SM-4BOPQ 5.6
GTEX-11EQ9-1826-SM-5Q5AJ 5.5
GTEX-11GSO-1926-SM-5A5K3 5.5
GTEX-R53T-1526-SM-48FEK 5.5
GTEX-S7SE-0826-SM-4AT4D 5.5
GTEX-U8XE-0826-SM-4E3J1 5.5
GTEX-W5X1-2326-SM-3GIL6 5.5
GTEX-132AR-0826-SM-5EGK6 5.4
GTEX-13S86-1226-SM-5S2OA 5.4
GTEX-145MN-1926-SM-5SIAI 5.4
GTEX-S32W-2026-SM-4AD6E 5.4
GTEX-11ZUS-0826-SM-5FQUY 5.3
GTEX-12KS4-0126-SM-5Q5A5 5.3
GTEX-132NY-0826-SM-5K7Y7 5.3
GTEX-ZVT4-1026-SM-57WC4 5.3
GTEX-11NV4-2026-SM-5N9DG 5.2
GTEX-14753-2426-SM-5LU8U 5.1
GTEX-YJ8O-2226-SM-5IFHW 5.1
GTEX-ZUA1-1526-SM-59HLS 5.1
GTEX-11WQK-2426-SM-5GU5C 5.0
GTEX-1117F-2826-SM-5GZXL 4.9
GTEX-12WSK-2226-SM-5GCO5 4.9
GTEX-12WSN-1326-SM-5GCNT 4.9
GTEX-XQ8I-2426-SM-4WAXY 4.9
GTEX-ZDXO-0126-SM-5S2ND 4.9
GTEX-13PVQ-1026-SM-5KM3M 4.6
GTEX-117XS-1926-SM-5GICO 4.4
GTEX-ZYT6-0126-SM-5E45J 4.3
GTEX-13FTW-1426-SM-5LZWZ 4.2
GTEX-R55D-0826-SM-48FEA 4.2
GTEX-S4Q7-1126-SM-4AD6R 4.2
GTEX-Y5V6-2126-SM-4WWFX 4.2
GTEX-Y8E4-1626-SM-5S2MW 4.2
GTEX-ZWKS-2826-SM-5NQ74 4.2
GTEX-13FTX-1126-SM-5N9EN 4.1
GTEX-WFON-1826-SM-3GILG 4.1
GTEX-ZV6S-1826-SM-5NQ8D 4.1
GTEX-12WSM-1726-SM-5BC6J 4.0
GTEX-14E6E-1326-SM-5S2NR 4.0
GTEX-PSDG-1626-SM-48TCQ 3.9
GTEX-QMRM-1626-SM-4R1KV 3.9
GTEX-ZAB4-2526-SM-5HL8M 3.9
GTEX-144GM-0926-SM-5O994 3.8
GTEX-WY7C-2726-SM-3NB3P 3.8
GTEX-YFCO-1826-SM-4W1YH 3.8
GTEX-ZDTT-2126-SM-5S2OJ 3.8
GTEX-ZPIC-1126-SM-5BC7F 3.8
GTEX-ZT9W-2026-SM-51MRA 3.8
GTEX-ZYW4-0826-SM-5GIDG 3.8
GTEX-139T6-1626-SM-5PNYZ 3.6
GTEX-YB5E-1726-SM-5IFJ3 3.6
GTEX-11DXZ-1926-SM-5GZZL 3.4
GTEX-11TUW-1826-SM-5BC5D 3.4
GTEX-TKQ2-1826-SM-33HB2 3.4
GTEX-12BJ1-1826-SM-5HL9N 3.3
GTEX-Y9LG-1426-SM-5IFJZ 3.3
GTEX-117YX-1426-SM-5H12H 3.2
GTEX-13CF3-2126-SM-5IFJP 3.2
GTEX-UTHO-1026-SM-3GAF7 3.2
GTEX-ZQG8-0726-SM-5P9H9 3.2
GTEX-13N1W-0626-SM-5MR4U 3.1
GTEX-145ME-1526-SM-5Q5F2 3.1
GTEX-TKQ1-0226-SM-33HB5 3.1
GTEX-YEC3-1026-SM-5IFI5 3.1
GTEX-YB5K-1626-SM-5IFIN 3.0
GTEX-ZA64-1526-SM-5CVMD 3.0
GTEX-13O61-1826-SM-5KM4I 2.8
GTEX-ZDYS-1126-SM-5K7UB 2.8
GTEX-ZLFU-2126-SM-4WWEV 2.7
GTEX-11DXY-2326-SM-5GICW 2.6
GTEX-11ZTT-2326-SM-5EQLG 2.6
GTEX-ZQUD-1926-SM-51MSA 2.6
GTEX-XGQ4-0926-SM-4AT4U 2.1
GTEX-ZZ64-1226-SM-5E43R 2.1
GTEX-REY6-2426-SM-48FF5 1.9
GTEX-11P82-1326-SM-5HL62 1.2
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

7.5

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 7.5
FF:10080-102A8 77 years, female 7.5

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