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TISSUE ATLAS PRIMARY DATA CEREBELLUM

GENE/PROTEIN

Antibody validation


Dictionary

Cerebellum

CEREBELLUM - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:14.8RPKM
FANTOM5:84.7Tags Per Million

CEREBELLUM - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in granular layer:Not detected
Cells in molecular layer:Not detected
Purkinje cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA023861

 

Antibody HPA026536

 

Cells in granular layer

Low   Not detected  

Cells in molecular layer

Low   Not detected  

Purkinje cells

High   Not detected  
   
   
   

CEREBELLUM - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


CEREBELLUM - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

14.8

GTEx sample id

RPKM

 

Brain - Cerebellar Hemisphere

Brain - Cerebellar Hemisphere
RPKM: 15.2
Samples: 105

Max RPKM: 25.5
Min RPKM: 6.8
Std RPKM: 3.4
Median RPKM: 15.2
GTEX-13X6J-0011-R11a-SM-5P9HE 25.5
GTEX-13FLV-0011-R11a-SM-5LZZ7 24.8
GTEX-NL4W-0011-R11A-SM-2I3DW 24.5
GTEX-13FHP-0011-R11b-SM-5LZXP 21.1
GTEX-13JUV-0011-R11a-SM-5LZYH 21.1
GTEX-N7MS-0011-R11A-SM-2HMJS 20.3
GTEX-X261-0011-R11A-SM-4E3JY 20.3
GTEX-13X6I-0011-R11a-SM-5P9HN 20.0
GTEX-Z93S-0011-R11a-SM-4RGNN 19.8
GTEX-1399T-0011-R11a-SM-5J2O1 19.5
GTEX-ZDXO-0011-R11a-SM-4WWD9 18.8
GTEX-13SLW-0011-R11a-SM-5SI8Q 18.6
GTEX-139TT-0011-R11b-SM-5LZV1 18.4
GTEX-WWYW-0011-R11A-SM-3NB38 18.4
GTEX-13O3Q-0011-R11b-SM-5KM2W 18.2
GTEX-131XH-0011-R11a-SM-5EGLN 18.1
GTEX-ZE7O-0011-R11a-SM-57WBC 18.1
GTEX-11ZUS-0011-R11b-SM-5BC7B 18.0
GTEX-ZVT3-0011-R11b-SM-57WBI 18.0
GTEX-13NZA-0011-R11b-SM-5KM4W 17.9
GTEX-13VXU-0011-R11b-SM-5O9DJ 17.9
GTEX-13X6K-0011-R11a-SM-5P9F5 17.5
GTEX-YJ89-0011-R11a-SM-4SOKA 17.5
GTEX-12WSE-0011-R11b-SM-5P9JW 17.4
GTEX-13NYB-0011-R11a-SM-5KM3Q 17.4
GTEX-144GL-0011-R11b-SM-5P9F6 17.4
GTEX-13CZV-0011-R11b-SM-5N9FN 17.2
GTEX-WHSE-0011-R11A-SM-3P5YY 17.2
GTEX-13OVH-0011-R11b-SM-5KM4X 17.1
GTEX-13QIC-0011-R11b-SM-5O9BU 17.1
GTEX-12WSB-0011-R11b-SM-57WBJ 17.0
GTEX-13FHO-0011-R11b-SM-5LZYQ 17.0
GTEX-13OW6-0011-R11a-SM-5L3H2 16.9
GTEX-13S7M-0011-R11b-SM-5P9HU 16.9
GTEX-13SLX-0011-R11b-SM-5O9C8 16.9
GTEX-1313W-0011-R11a-SM-5DUXN 16.8
GTEX-11WQC-0011-R11b-SM-57WD6 16.7
GTEX-13RTJ-0011-R11a-SM-5O9CK 16.7
GTEX-12WSM-0011-R11a-SM-5DUX8 16.5
GTEX-145MH-0011-R11a-SM-5P9HQ 16.5
GTEX-ZVZQ-0011-R11a-SM-51MS6 16.3
GTEX-12WSF-0011-R11a-SM-5LZVT 16.2
GTEX-13OW5-0011-R11b-SM-5L3GG 16.1
GTEX-NPJ7-0011-R11A-SM-2I3E8 15.9
GTEX-WL46-0011-R11A-SM-3MJFT 15.9
GTEX-12WSC-0011-R11a-SM-5GU5J 15.7
GTEX-145LU-0011-R11b-SM-5P9JX 15.7
GTEX-14BIM-0011-R11b-SM-5S2RN 15.7
GTEX-WZTO-0011-R11A-SM-4E3K9 15.7
GTEX-XOTO-0011-R11B-SM-4B64O 15.6
GTEX-13OW7-0011-R11a-SM-5O9DY 15.4
GTEX-14ABY-0011-R11a-SM-5SI7C 15.4
GTEX-12WSI-0011-R11b-SM-5P9EZ 15.2
GTEX-RVPV-0011-R11A-SM-2TF6F 15.1
GTEX-13OW8-0011-R11a-SM-5L3GT 14.9
GTEX-NPJ8-0011-R11A-SM-2YUMS 14.9
GTEX-R55E-0011-R11A-SM-2TC6I 14.9
GTEX-T5JC-0011-R11A-SM-32PMB 14.7
GTEX-Y8DK-0011-R11A-SM-4SOK2 14.7
GTEX-13G51-0011-R11b-SM-5J2NE 14.6
GTEX-14BIN-0011-R11a-SM-5SI79 14.6
GTEX-13N2G-0011-R11a-SM-5MR3F 14.5
GTEX-131YS-0011-R11b-SM-5EGLM 14.2
GTEX-132Q8-0011-R11b-SM-5DUW9 14.2
GTEX-11H98-0011-R11b-SM-5NQ6U 14.1
GTEX-X585-0011-R11B-SM-46MUZ 14.1
GTEX-Q2AG-0011-R11A-SM-2HMKZ 14.0
GTEX-X4XX-0011-R11A-SM-46MWQ 13.9
GTEX-OHPN-0011-R11A-SM-2I5FM 13.8
GTEX-145MI-0011-R11a-SM-5P9JZ 13.5
GTEX-ZAB4-0011-R11a-SM-4SOKI 13.5
GTEX-ZUA1-0011-R11b-SM-51MTI 13.5
GTEX-QDT8-0011-R11A-SM-32PKD 13.3
GTEX-13FTY-0011-R11a-SM-5IJEA 13.1
GTEX-NL3H-0011-R11A-SM-2I3E6 13.0
GTEX-T6MN-0011-R11A-SM-32QOX 13.0
GTEX-13JVG-0011-R11a-SM-5KM53 12.8
GTEX-UTHO-0011-R11A-SM-3GIJE 12.8
GTEX-QMR6-0011-R11A-SM-32PKK 12.7
GTEX-12ZZX-0011-R11a-SM-5DUVJ 12.6
GTEX-12WSH-0011-R11a-SM-5LZVM 12.5
GTEX-P44H-0011-R11A-SM-2XCER 12.5
GTEX-S7SE-0011-R11A-SM-2XCDD 12.5
GTEX-11GSP-0011-R11b-SM-5NQ7V 12.3
GTEX-13CF2-0011-R11b-SM-5LZXO 12.3
GTEX-13OVL-0011-R11b-SM-5L3G7 12.3
GTEX-RU72-0011-R11A-SM-5SI8G 12.3
GTEX-XMD1-0011-R11A-SM-4AT5J 12.3
GTEX-12126-0011-R11a-SM-5BC6X 12.2
GTEX-WVLH-0011-R11A-SM-3MJFO 12.1
GTEX-131XW-0011-R11a-SM-5DUV9 11.9
GTEX-13OVJ-0011-R11a-SM-5P9H8 11.9
GTEX-ZF28-0011-R11a-SM-4WWEI 11.9
GTEX-TSE9-0011-R11A-SM-3DB7N 11.8
GTEX-YFC4-0011-R11a-SM-4SOK6 11.3
GTEX-13PVQ-0011-R11a-SM-5O9DU 11.1
GTEX-13O3O-0011-R11b-SM-5KM4G 10.6
GTEX-13PLJ-0011-R11b-SM-5O9BS 10.6
GTEX-X4EP-0011-R11B-SM-4QASK 10.3
GTEX-11OF3-0011-R11a-SM-57WCR 9.4
GTEX-12ZZZ-0011-R11a-SM-5EGLC 9.3
GTEX-13NYS-0011-R11b-SM-5MR4P 7.4
GTEX-13FXS-0011-R11a-SM-5L3DM 7.3
GTEX-T2IS-0011-R11A-SM-32QPC 7.1
GTEX-139UW-0011-R11a-SM-5IJGN 6.8
Show all
 

Brain - Cerebellum

Brain - Cerebellum
RPKM: 14.6
Samples: 125

Max RPKM: 21.2
Min RPKM: 4.4
Std RPKM: 2.6
Median RPKM: 14.9
GTEX-Q2AG-2826-SM-2HMJQ 21.2
GTEX-X261-3126-SM-4PQZC 20.5
GTEX-11ZUS-2826-SM-5EQKW 19.2
GTEX-Z93S-2826-SM-57WBL 19.1
GTEX-WWYW-3026-SM-3NB36 19.0
GTEX-13S7M-3026-SM-5S2QQ 18.9
GTEX-13X6I-2926-SM-5Q5C3 18.8
GTEX-ZAK1-2926-SM-5HL9S 18.5
GTEX-13FHP-2926-SM-5IJG9 18.3
GTEX-12WSM-2126-SM-5GCOC 18.2
GTEX-13JUV-3026-SM-5K7WX 18.1
GTEX-PWO3-1026-SM-2I5F2 18.0
GTEX-131XH-2926-SM-5LZU4 17.7
GTEX-13OW8-2926-SM-5L3FV 17.3
GTEX-QVUS-2926-SM-3GIJB 17.3
GTEX-145MG-3126-SM-5Q5D3 17.2
GTEX-11EI6-2926-SM-5985U 17.1
GTEX-11NUK-3026-SM-5986K 17.1
GTEX-12WSB-3026-SM-59HKM 17.1
GTEX-QDT8-3026-SM-32PKB 17.1
GTEX-XLM4-2926-SM-4AT59 17.0
GTEX-13QIC-3026-SM-5LU58 16.7
GTEX-RNOR-2226-SM-2TF5O 16.7
GTEX-WVLH-2926-SM-3MJG5 16.7
GTEX-NPJ8-2626-SM-2D7W2 16.6
GTEX-UTHO-2926-SM-3P5Z9 16.5
GTEX-13RTJ-3126-SM-5S2Q4 16.4
GTEX-R55E-2526-SM-2TC6H 16.4
GTEX-13OW7-2926-SM-5MR3Z 16.3
GTEX-WZTO-2826-SM-3NM8P 16.2
GTEX-11NV4-2226-SM-5BC4T 16.1
GTEX-144GL-2926-SM-5O99F 16.1
GTEX-145LS-3026-SM-5O99S 16.1
GTEX-145LU-2626-SM-5LU9Z 16.1
GTEX-ZYFD-2926-SM-5GID9 16.0
GTEX-13OW6-2926-SM-5KM29 15.9
GTEX-WHSE-2926-SM-3NMBG 15.9
GTEX-12WSD-3026-SM-5LZU7 15.8
GTEX-12ZZY-2926-SM-5DUXO 15.8
GTEX-Y111-2826-SM-4TT3O 15.8
GTEX-13VXU-3026-SM-5LU3K 15.7
GTEX-14BIN-3326-SM-5Q5E6 15.7
GTEX-T6MN-2526-SM-32PMN 15.7
GTEX-13NYB-3226-SM-5J2ND 15.6
GTEX-XOTO-2926-SM-4B65G 15.6
GTEX-ZAB4-2926-SM-57WCV 15.6
GTEX-ZVT3-2926-SM-5GU6M 15.6
GTEX-11ZTS-3226-SM-5EGID 15.5
GTEX-13N2G-3126-SM-5IJGL 15.5
GTEX-13X6K-2826-SM-5O9DS 15.5
GTEX-147F4-3026-SM-5Q5BJ 15.5
GTEX-14BIM-3126-SM-5Q5C7 15.5
GTEX-11O72-2826-SM-5HL6W 15.4
GTEX-12WSE-2926-SM-5RQJ9 15.4
GTEX-11DZ1-2926-SM-5A5KI 15.3
GTEX-T5JC-2326-SM-32PMR 15.3
GTEX-WL46-2826-SM-3LK81 15.3
GTEX-YJ89-2926-SM-5P9IT 15.3
GTEX-13O3Q-3026-SM-5IJGD 15.2
GTEX-X4XX-2926-SM-3NMB1 15.2
GTEX-R55F-1226-SM-2TF59 15.1
GTEX-1313W-3026-SM-5LZUZ 15.0
GTEX-14E7W-2926-SM-5S2R8 14.9
GTEX-13FHO-2926-SM-5L3ES 14.8
GTEX-ZYY3-3026-SM-5GIEJ 14.8
GTEX-13PVQ-2926-SM-5L3HJ 14.7
GTEX-1128S-2826-SM-5N9DI 14.6
GTEX-11DXW-1026-SM-5H11K 14.6
GTEX-139TT-2626-SM-5LZUB 14.3
GTEX-N7MS-2526-SM-2D7W3 14.3
GTEX-1399T-3126-SM-5IJFS 14.2
GTEX-13OW5-3126-SM-5MR3Y 14.1
GTEX-Y8DK-0726-SM-4TT3S 14.1
GTEX-ZUA1-2926-SM-59HL3 14.1
GTEX-QVJO-1325-SM-2S1QX 14.0
GTEX-13CF2-3026-SM-5IFFX 13.9
GTEX-NPJ7-2826-SM-2I3FU 13.9
GTEX-12ZZX-2826-SM-5BC6K 13.8
GTEX-14A5I-2826-SM-5SIBF 13.8
GTEX-11DYG-2926-SM-5H132 13.7
GTEX-YFC4-3026-SM-5IFJK 13.6
GTEX-11GSP-3126-SM-5A5LL 13.5
GTEX-11PRG-2826-SM-5BC54 13.5
GTEX-139TS-3126-SM-5LZWX 13.5
GTEX-13OVL-3026-SM-5IJF1 13.5
GTEX-14DAQ-3026-SM-5S2QZ 13.5
GTEX-S7SE-2526-SM-2XCDL 13.4
GTEX-131YS-3026-SM-5EGHY 13.3
GTEX-13OVH-2926-SM-5IJFH 13.3
GTEX-TSE9-2926-SM-3DB77 13.3
GTEX-11DXY-3126-SM-5N9BT 13.2
GTEX-12WSC-2926-SM-5BC5Z 13.1
GTEX-ZAJG-3026-SM-5HL92 13.1
GTEX-1192X-3226-SM-5987D 13.0
GTEX-N7MT-1226-SM-2D7W4 13.0
GTEX-13JVG-3226-SM-5IJGJ 12.9
GTEX-117XS-3126-SM-5GIDP 12.8
GTEX-11TTK-2826-SM-5GU5K 12.8
GTEX-11GSO-3026-SM-5Q5AL 12.7
GTEX-11ONC-3026-SM-5985W 12.7
GTEX-145MH-2926-SM-5Q5D2 12.7
GTEX-RU72-2926-SM-2TF66 12.7
GTEX-13G51-3126-SM-5IJG7 12.5
GTEX-ZZPT-2926-SM-5EQ5S 12.5
GTEX-11ZVC-3026-SM-59HJM 12.3
GTEX-12ZZZ-3126-SM-5LZU6 12.2
GTEX-1269C-3126-SM-5EGI6 12.0
GTEX-12126-0926-SM-5FQTW 11.8
GTEX-PVOW-2626-SM-32PL8 11.8
GTEX-XMD1-2826-SM-4AT5F 11.8
GTEX-13O3O-3026-SM-5KM42 11.7
GTEX-12WSH-3126-SM-5LZW8 11.3
GTEX-111FC-3326-SM-5GZYV 11.2
GTEX-13112-2926-SM-5DUWT 11.2
GTEX-QMR6-1326-SM-32PLB 11.2
GTEX-132Q8-2926-SM-5IFFP 11.1
GTEX-13OVJ-2726-SM-5IJG6 11.0
GTEX-X4EP-3026-SM-3P5YP 10.9
GTEX-11EMC-3326-SM-5P9JH 10.7
GTEX-P44H-2426-SM-2XCEJ 10.6
GTEX-13FXS-3026-SM-5LZYO 8.9
GTEX-T2IS-2926-SM-32QPO 8.4
GTEX-14C5O-2926-SM-5RQI1 8.0
GTEX-14ASI-2926-SM-5Q5DG 7.9
GTEX-11OF3-3126-SM-5GU5E 4.4
Show all

CEREBELLUM - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

84.7

FANTOM5 sample id

Sample description

Tags Per Million

Cerebellum
Tags Per Million: 84.7
FF:10166-103B4 76 years, female 92.6
FF:10083-102B2 22-68 years, mixed 76.9

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