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Antibodies

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TISSUE ATLAS PRIMARY DATA OVARY

GENE/PROTEIN

Antibody validation


Dictionary

Ovary

Tissue proteome

Ovary

OVARY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:39.0TPM
GTEx:9.1RPKM
FANTOM5:34.4Tags Per Million

OVARY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Follicle cells:Not detected
Ovarian stroma cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA023861

 

Antibody HPA026536

 

Follicle cells

Not detected   Not detected  

Ovarian stroma cells

Not detected   Not detected  
   
   
   

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

39.0

overview Female, age 64
Sample 1
TPM: 33.9
Cell types%
Stromal cells: 70
Smooth muscle cells: 15
Other cell types: 15
overview Female, age 52
Sample 2
TPM: 39.6
Cell types%
Stromal cells: 95
Other cell types: 5
overview Female, age 80
Sample 3
TPM: 43.5
Cell types%
Stromal cells: 70
Smooth muscle cells: 25
Other cell types: 5

OVARY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

9.1

GTEx sample id

RPKM

 

Ovary

Ovary
RPKM: 9.1
Samples: 97

Max RPKM: 15
Min RPKM: 4.5
Std RPKM: 2.2
Median RPKM: 9
GTEX-YJ8O-1026-SM-5CVM5 15.0
GTEX-13QIC-1526-SM-5IJFL 14.2
GTEX-XMD3-2326-SM-4AT5H 14.1
GTEX-12WSB-2226-SM-5GCOS 13.9
GTEX-Q734-0726-SM-48TZP 13.0
GTEX-PX3G-2426-SM-48TZZ 12.9
GTEX-YFC4-2726-SM-5IFJW 12.6
GTEX-1313W-2726-SM-5P9IX 12.6
GTEX-WWYW-2726-SM-4MVOP 12.4
GTEX-12WSK-1926-SM-5LZVK 12.4
GTEX-1269C-1826-SM-5N9E1 12.4
GTEX-T2IS-2026-SM-4DM6W 12.1
GTEX-146FH-2526-SM-5Q5BP 11.9
GTEX-Y3IK-2026-SM-4YCDG 11.7
GTEX-ZVT3-2626-SM-5GU5L 11.5
GTEX-11ZVC-1426-SM-5EGGA 11.4
GTEX-12WSJ-1226-SM-5LU91 11.3
GTEX-S7SF-1326-SM-4AD4P 11.3
GTEX-12ZZX-2026-SM-5LZV9 11.3
GTEX-TML8-0926-SM-4DXSJ 11.2
GTEX-131YS-2226-SM-5P9G8 11.0
GTEX-13VXT-1526-SM-5LU3J 10.8
GTEX-ZP4G-0626-SM-4WWF1 10.7
GTEX-X8HC-2726-SM-46MUA 10.7
GTEX-12WSD-2726-SM-59HLR 10.7
GTEX-13N11-0526-SM-5IJFI 10.5
GTEX-ZC5H-2026-SM-5CVN2 10.5
GTEX-POMQ-1426-SM-3P61D 10.3
GTEX-13O3O-2726-SM-5KM35 10.3
GTEX-13U4I-2126-SM-5LU55 10.3
GTEX-UJHI-1226-SM-4IHLR 10.2
GTEX-TSE9-2226-SM-4DXUR 10.2
GTEX-12WSG-1426-SM-5FQUK 10.2
GTEX-QVJO-3126-SM-4R1KC 10.0
GTEX-RTLS-2326-SM-46MUH 9.9
GTEX-XYKS-1726-SM-4E3IO 9.7
GTEX-XUJ4-1326-SM-4BOQ9 9.6
GTEX-ZYFG-1726-SM-5GZZB 9.6
GTEX-14AS3-1326-SM-5RQJE 9.5
GTEX-139D8-2426-SM-5KM3A 9.5
GTEX-13D11-1126-SM-5KLYS 9.4
GTEX-XV7Q-1426-SM-4BRWA 9.3
GTEX-S4P3-0926-SM-4AD54 9.2
GTEX-P4QT-2426-SM-3NMCL 9.2
GTEX-PWCY-1326-SM-48TCU 9.2
GTEX-P4PP-2426-SM-3P61L 9.1
GTEX-T5JW-0426-SM-4DM7M 9.1
GTEX-S341-0726-SM-4AD5R 9.0
GTEX-U3ZN-1026-SM-4DXTC 9.0
GTEX-PLZ4-2826-SM-3P617 8.9
GTEX-WI4N-2526-SM-4OOSE 8.9
GTEX-13QBU-1526-SM-5LU3W 8.9
GTEX-ZAJG-2726-SM-5S2MU 8.8
GTEX-11P81-1526-SM-5P9GS 8.7
GTEX-TMMY-1726-SM-4DXTD 8.7
GTEX-ZYY3-2726-SM-5EGH4 8.6
GTEX-13X6H-1026-SM-5SIBE 8.6
GTEX-RU72-2226-SM-46MUE 8.4
GTEX-13W3W-1526-SM-5LU5I 8.3
GTEX-X4EO-2426-SM-4QASD 8.3
GTEX-11ZTS-1926-SM-5CVLA 8.2
GTEX-X15G-1726-SM-4PQZN 8.0
GTEX-ZZPU-2126-SM-5EGIU 8.0
GTEX-11ZTT-1826-SM-5CVLN 7.9
GTEX-11VI4-1026-SM-5EQM1 7.9
GTEX-13OVJ-2426-SM-5KM3I 7.9
GTEX-11EMC-1726-SM-5H11P 7.7
GTEX-133LE-1226-SM-5IFGC 7.5
GTEX-RU1J-0826-SM-46MUU 7.5
GTEX-11GSP-0226-SM-5A5KV 7.4
GTEX-PWN1-2426-SM-48TDD 7.4
GTEX-OHPL-2426-SM-48TDN 7.4
GTEX-11XUK-1626-SM-5GU5O 7.4
GTEX-145ME-1226-SM-5SIB6 7.3
GTEX-132AR-1426-SM-5IFF1 7.3
GTEX-XUZC-1026-SM-4BOPY 7.3
GTEX-13PL7-2326-SM-5L3FY 7.1
GTEX-13OVI-0726-SM-5L3DD 7.0
GTEX-XUW1-0126-SM-4BOOQ 7.0
GTEX-ZPIC-1426-SM-4WWCP 7.0
GTEX-ZVT2-0326-SM-5E44G 7.0
GTEX-13FTX-0926-SM-5IFF7 6.9
GTEX-S32W-1226-SM-4AD67 6.9
GTEX-11DXX-1426-SM-5GIDU 6.6
GTEX-W5WG-0926-SM-4RTX9 6.6
GTEX-13PVR-1226-SM-5RQJ2 6.5
GTEX-OHPK-2426-SM-3MJGH 6.5
GTEX-P78B-1926-SM-3P616 6.5
GTEX-Y114-1726-SM-4TT7U 6.4
GTEX-ZYWO-1926-SM-5E456 6.4
GTEX-11EM3-1726-SM-5N9D1 5.7
GTEX-QCQG-1426-SM-48U22 5.6
GTEX-1399S-2126-SM-5J2MH 5.3
GTEX-11I78-1926-SM-59878 5.3
GTEX-T6MO-1126-SM-4DM5D 5.2
GTEX-RWS6-1026-SM-47JXD 4.9
GTEX-ZLWG-0926-SM-4WWC3 4.5
Show all

OVARY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

34.4

FANTOM5 sample id

Sample description

Tags Per Million

Ovary
Tags Per Million: 34.4
FF:10020-101D2 47,75,84 years, female 34.4

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