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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 72.8
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 84.5
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 108.8
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 72.0
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 61.1
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 50.9
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 78.0
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 74.3
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 74.0
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 44
Min RPKM: 5.7
Std RPKM: 7.5
Median RPKM: 22.2
GTEX-11P7K-1026-SM-5HL6Y
44.0
GTEX-WFON-2026-SM-4LVMW
40.4
GTEX-PLZ5-1526-SM-3P5ZX
39.9
GTEX-1399Q-2826-SM-5IJEZ
39.1
GTEX-ZTX8-1126-SM-51MRM
39.1
GTEX-144GN-1626-SM-5Q5BU
37.6
GTEX-OIZI-0126-SM-3NB13
37.1
GTEX-WHSB-2126-SM-4M1XF
36.8
GTEX-S33H-0126-SM-4AD62
36.5
GTEX-13FTW-1326-SM-5LZZD
36.0
GTEX-11WQK-2826-SM-5EQKH
35.7
GTEX-WFG8-1926-SM-4LVM1
35.7
GTEX-14A6H-2326-SM-5Q5B5
35.2
GTEX-XGQ4-2026-SM-4AT6G
34.4
GTEX-XMK1-2026-SM-4B65K
33.3
GTEX-YB5E-1926-SM-5IFIG
32.7
GTEX-RN64-2326-SM-48FDW
32.3
GTEX-S3XE-1526-SM-4AD5A
31.6
GTEX-11P82-1526-SM-5BC5M
31.0
GTEX-QV44-1726-SM-4R1KG
30.9
GTEX-Y8E4-2226-SM-5LU94
30.8
GTEX-13N2G-0126-SM-5N9DV
30.6
GTEX-S4Q7-1226-SM-4AD5I
30.0
GTEX-YF7O-2026-SM-4W1YE
30.0
GTEX-139T6-1226-SM-5IFFC
29.5
GTEX-147F4-0626-SM-5LUAK
29.3
GTEX-O5YT-2126-SM-3MJGD
29.2
GTEX-U3ZM-1626-SM-4DXSK
29.2
GTEX-ZDTT-2026-SM-5K7TY
29.2
GTEX-13O21-1226-SM-5J2MK
28.8
GTEX-YFCO-1726-SM-4W21S
28.7
GTEX-U4B1-1526-SM-4DXSL
28.4
GTEX-XPVG-2226-SM-4B65U
28.1
GTEX-ZUA1-2726-SM-59HLJ
28.0
GTEX-RWSA-2426-SM-47JXR
27.7
GTEX-Y9LG-1726-SM-4VBQE
27.6
GTEX-TKQ2-1526-SM-4DXUN
27.5
GTEX-ZZ64-1126-SM-5GZXY
27.3
GTEX-P4QS-2126-SM-3NMCF
27.2
GTEX-11ONC-2226-SM-5HL6D
26.9
GTEX-ZT9W-2226-SM-57WFU
26.9
GTEX-U3ZH-1526-SM-4DXV1
26.8
GTEX-YJ89-0626-SM-4TT3Z
26.8
GTEX-QMRM-1526-SM-4R1K6
26.5
GTEX-X261-2326-SM-4PQYU
26.5
GTEX-145LT-0426-SM-5LUAP
25.8
GTEX-12WSI-2126-SM-5GCMV
25.7
GTEX-13OW6-0126-SM-5IJGM
25.7
GTEX-R55E-0726-SM-48FCZ
25.7
GTEX-111CU-1726-SM-5EGHM
25.5
GTEX-R55D-0126-SM-48FEL
25.3
GTEX-XPT6-1626-SM-4B655
24.8
GTEX-QLQ7-1426-SM-4R1JX
24.6
GTEX-YEC3-1726-SM-5IFIK
24.6
GTEX-12C56-1426-SM-5FQSW
24.5
GTEX-11EI6-2226-SM-5EGJM
24.4
GTEX-13O61-2026-SM-5J2M6
24.3
GTEX-ZAB4-0126-SM-5CVMG
24.3
GTEX-ZV7C-2026-SM-5NQ8F
24.3
GTEX-OIZH-2126-SM-3NB1P
24.2
GTEX-OHPM-2126-SM-3LK75
23.9
GTEX-PW2O-1426-SM-48TCD
23.8
GTEX-TKQ1-0926-SM-4DXU2
23.8
GTEX-11DXZ-2126-SM-59881
23.7
GTEX-139TT-2226-SM-5LZWO
23.7
GTEX-13NYB-2226-SM-5MR58
23.7
GTEX-QLQW-1026-SM-447A9
23.7
GTEX-11NSD-1026-SM-5N9BE
23.6
GTEX-S7SE-0326-SM-4AT5Q
23.4
GTEX-ZYT6-2726-SM-5GICP
23.3
GTEX-SNMC-1026-SM-4DM7K
23.1
GTEX-12WSH-0326-SM-5GCNH
23.0
GTEX-111FC-1926-SM-5GZYC
22.9
GTEX-VJYA-1426-SM-4KL1Y
22.8
GTEX-ZA64-1626-SM-5CVME
22.8
GTEX-ZVTK-0126-SM-57WDG
22.8
GTEX-11EQ9-1926-SM-5PNVV
22.6
GTEX-13NZB-2026-SM-5MR4M
22.6
GTEX-12696-0226-SM-5EGL3
22.5
GTEX-ZPU1-2126-SM-57WED
22.5
GTEX-145MH-2326-SM-5O9AW
22.4
GTEX-Y5V6-1726-SM-4VDSZ
22.4
GTEX-11GS4-2026-SM-5N9CP
22.3
GTEX-11OF3-1826-SM-5987N
22.3
GTEX-R55C-1426-SM-48FED
22.2
GTEX-XBED-2026-SM-4AT5D
22.2
GTEX-ZDYS-1326-SM-5IJFF
22.2
GTEX-NFK9-0126-SM-3LK5H
22.0
GTEX-11TT1-2226-SM-5GU6B
21.8
GTEX-111YS-2026-SM-5EGGL
21.7
GTEX-SNOS-1126-SM-4DM67
21.7
GTEX-1212Z-0326-SM-5FQSJ
21.6
GTEX-RM2N-1326-SM-48FCW
21.5
GTEX-1339X-1926-SM-5PNVP
21.4
GTEX-OXRL-2126-SM-3NM98
21.4
GTEX-Q2AI-1226-SM-48U14
21.4
GTEX-YEC4-1526-SM-4W1YU
21.3
GTEX-XBEC-0126-SM-4GIDT
21.2
GTEX-13OVH-0726-SM-5N9BU
21.1
GTEX-13FLW-2126-SM-5N9FD
21.0
GTEX-XAJ8-1326-SM-47JYT
21.0
GTEX-SUCS-1326-SM-4DM5T
20.8
GTEX-WZTO-0326-SM-4PQYZ
20.3
GTEX-ZAB5-2426-SM-5CVMW
20.3
GTEX-13111-1526-SM-5EGJX
20.2
GTEX-WOFM-1126-SM-4OOSB
20.1
GTEX-T8EM-0126-SM-4DM5R
20.0
GTEX-11EQ8-1426-SM-5EGJR
19.9
GTEX-11O72-0726-SM-5P9GO
19.6
GTEX-131XE-0426-SM-5IJF4
19.6
GTEX-ZT9X-1426-SM-5DUX1
19.6
GTEX-ZQUD-2026-SM-51MSM
19.5
GTEX-X3Y1-2626-SM-4PQZI
19.0
GTEX-V955-1926-SM-4KL1L
18.6
GTEX-132QS-1226-SM-5P9GD
18.4
GTEX-ZVZP-2226-SM-57WBF
18.4
GTEX-V1D1-2126-SM-4JBH4
18.2
GTEX-147JS-0126-SM-5S2TW
17.9
GTEX-117XS-2026-SM-5GID1
17.8
GTEX-12ZZY-0126-SM-5LZV2
17.8
GTEX-1399R-1626-SM-5P9GG
17.6
GTEX-ZTSS-1526-SM-51MTC
17.5
GTEX-T5JC-0726-SM-4DM55
17.2
GTEX-13NZA-2526-SM-5IJFX
17.0
GTEX-U8T8-1126-SM-4DXUE
16.8
GTEX-WVLH-2626-SM-4MVNV
16.8
GTEX-13VXU-0726-SM-5J2O7
16.7
GTEX-13OW5-2526-SM-5L3I1
16.6
GTEX-QEG5-0126-SM-4R1JR
16.6
GTEX-Z93S-1726-SM-5HL8G
16.6
GTEX-13OVL-0426-SM-5IFG6
16.4
GTEX-ZYFC-0126-SM-5GIEH
16.4
GTEX-X5EB-2026-SM-4E3KA
16.2
GTEX-OOBK-2126-SM-3LK5T
15.4
GTEX-11LCK-2326-SM-5HL53
15.2
GTEX-11NUK-2626-SM-5A5MB
15.1
GTEX-Q2AH-1526-SM-48TZG
15.1
GTEX-REY6-0126-SM-48FDT
15.1
GTEX-117YW-1526-SM-5EGGP
15.0
GTEX-144GL-0726-SM-5LU4P
14.7
GTEX-XLM4-1526-SM-4AT6D
14.7
GTEX-144GM-0426-SM-5Q5C8
14.2
GTEX-S95S-1126-SM-4B64E
14.0
GTEX-P4QR-0226-SM-3NMCH
13.9
GTEX-QEG4-0126-SM-48TZE
13.8
GTEX-WH7G-1926-SM-4LVMM
13.8
GTEX-12WSL-2326-SM-5DUXQ
13.6
GTEX-139TS-1726-SM-5IJG5
13.6
GTEX-OOBJ-2126-SM-3NB1N
13.5
GTEX-S7PM-0626-SM-4AD4Q
13.5
GTEX-T6MN-2026-SM-4DM7L
13.5
GTEX-XQ3S-2726-SM-4BOP2
13.5
GTEX-12WSM-1326-SM-5GCP9
13.4
GTEX-145MO-0126-SM-5S2QU
13.3
GTEX-UPJH-0126-SM-4IHLL
13.3
GTEX-13N1W-2626-SM-5IJEP
12.6
GTEX-QV31-1126-SM-4R1K4
12.4
GTEX-WK11-0326-SM-4OOS6
12.1
GTEX-U8XE-0126-SM-4E3I3
11.7
GTEX-N7MS-0126-SM-3TW8O
11.6
GTEX-11ZUS-2726-SM-5FQUA
11.4
GTEX-13112-0226-SM-5P9IV
10.8
GTEX-Y111-2426-SM-4TT23
10.4
GTEX-14ABY-0626-SM-5Q5C9
10.3
GTEX-14753-0626-SM-5Q5CY
10.1
GTEX-11NV4-1726-SM-5N9FC
9.7
GTEX-11WQC-2326-SM-5EQKE
9.4
GTEX-11TUW-2226-SM-5EQL9
8.9
GTEX-13O1R-0726-SM-5IJEI
7.3
GTEX-RUSQ-2126-SM-47JXK
7.3
GTEX-13FHP-2826-SM-5IJFW
7.2
GTEX-111VG-1926-SM-5GIDO
5.7
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.