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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:76.9TPM
GTEx:22.0RPKM
FANTOM5:538.2Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:Low
Leydig cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA021324

 

Antibody HPA029915

 

Antibody HPA051038

 

Cells in seminiferous ducts

High   Not detected   Low  

Leydig cells

Medium   High   Not detected  
     
     
     

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

76.9

overview Male, age 56
Sample 1
TPM: 93.0
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 2
TPM: 72.8
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62
Sample 3
TPM: 84.5
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34
Sample 4
TPM: 108.8
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26
Sample 5
TPM: 72.0
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50
Sample 6
TPM: 61.1
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37
Sample 7
TPM: 50.9
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51
Sample 8
TPM: 78.0
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 9
TPM: 74.3
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26
Sample 10
TPM: 74.0
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

22.0

GTEx sample id

RPKM

 

Testis

Testis
RPKM: 22.0
Samples: 172

Max RPKM: 44
Min RPKM: 5.7
Std RPKM: 7.5
Median RPKM: 22.2
GTEX-11P7K-1026-SM-5HL6Y 44.0
GTEX-WFON-2026-SM-4LVMW 40.4
GTEX-PLZ5-1526-SM-3P5ZX 39.9
GTEX-1399Q-2826-SM-5IJEZ 39.1
GTEX-ZTX8-1126-SM-51MRM 39.1
GTEX-144GN-1626-SM-5Q5BU 37.6
GTEX-OIZI-0126-SM-3NB13 37.1
GTEX-WHSB-2126-SM-4M1XF 36.8
GTEX-S33H-0126-SM-4AD62 36.5
GTEX-13FTW-1326-SM-5LZZD 36.0
GTEX-11WQK-2826-SM-5EQKH 35.7
GTEX-WFG8-1926-SM-4LVM1 35.7
GTEX-14A6H-2326-SM-5Q5B5 35.2
GTEX-XGQ4-2026-SM-4AT6G 34.4
GTEX-XMK1-2026-SM-4B65K 33.3
GTEX-YB5E-1926-SM-5IFIG 32.7
GTEX-RN64-2326-SM-48FDW 32.3
GTEX-S3XE-1526-SM-4AD5A 31.6
GTEX-11P82-1526-SM-5BC5M 31.0
GTEX-QV44-1726-SM-4R1KG 30.9
GTEX-Y8E4-2226-SM-5LU94 30.8
GTEX-13N2G-0126-SM-5N9DV 30.6
GTEX-S4Q7-1226-SM-4AD5I 30.0
GTEX-YF7O-2026-SM-4W1YE 30.0
GTEX-139T6-1226-SM-5IFFC 29.5
GTEX-147F4-0626-SM-5LUAK 29.3
GTEX-O5YT-2126-SM-3MJGD 29.2
GTEX-U3ZM-1626-SM-4DXSK 29.2
GTEX-ZDTT-2026-SM-5K7TY 29.2
GTEX-13O21-1226-SM-5J2MK 28.8
GTEX-YFCO-1726-SM-4W21S 28.7
GTEX-U4B1-1526-SM-4DXSL 28.4
GTEX-XPVG-2226-SM-4B65U 28.1
GTEX-ZUA1-2726-SM-59HLJ 28.0
GTEX-RWSA-2426-SM-47JXR 27.7
GTEX-Y9LG-1726-SM-4VBQE 27.6
GTEX-TKQ2-1526-SM-4DXUN 27.5
GTEX-ZZ64-1126-SM-5GZXY 27.3
GTEX-P4QS-2126-SM-3NMCF 27.2
GTEX-11ONC-2226-SM-5HL6D 26.9
GTEX-ZT9W-2226-SM-57WFU 26.9
GTEX-U3ZH-1526-SM-4DXV1 26.8
GTEX-YJ89-0626-SM-4TT3Z 26.8
GTEX-QMRM-1526-SM-4R1K6 26.5
GTEX-X261-2326-SM-4PQYU 26.5
GTEX-145LT-0426-SM-5LUAP 25.8
GTEX-12WSI-2126-SM-5GCMV 25.7
GTEX-13OW6-0126-SM-5IJGM 25.7
GTEX-R55E-0726-SM-48FCZ 25.7
GTEX-111CU-1726-SM-5EGHM 25.5
GTEX-R55D-0126-SM-48FEL 25.3
GTEX-XPT6-1626-SM-4B655 24.8
GTEX-QLQ7-1426-SM-4R1JX 24.6
GTEX-YEC3-1726-SM-5IFIK 24.6
GTEX-12C56-1426-SM-5FQSW 24.5
GTEX-11EI6-2226-SM-5EGJM 24.4
GTEX-13O61-2026-SM-5J2M6 24.3
GTEX-ZAB4-0126-SM-5CVMG 24.3
GTEX-ZV7C-2026-SM-5NQ8F 24.3
GTEX-OIZH-2126-SM-3NB1P 24.2
GTEX-OHPM-2126-SM-3LK75 23.9
GTEX-PW2O-1426-SM-48TCD 23.8
GTEX-TKQ1-0926-SM-4DXU2 23.8
GTEX-11DXZ-2126-SM-59881 23.7
GTEX-139TT-2226-SM-5LZWO 23.7
GTEX-13NYB-2226-SM-5MR58 23.7
GTEX-QLQW-1026-SM-447A9 23.7
GTEX-11NSD-1026-SM-5N9BE 23.6
GTEX-S7SE-0326-SM-4AT5Q 23.4
GTEX-ZYT6-2726-SM-5GICP 23.3
GTEX-SNMC-1026-SM-4DM7K 23.1
GTEX-12WSH-0326-SM-5GCNH 23.0
GTEX-111FC-1926-SM-5GZYC 22.9
GTEX-VJYA-1426-SM-4KL1Y 22.8
GTEX-ZA64-1626-SM-5CVME 22.8
GTEX-ZVTK-0126-SM-57WDG 22.8
GTEX-11EQ9-1926-SM-5PNVV 22.6
GTEX-13NZB-2026-SM-5MR4M 22.6
GTEX-12696-0226-SM-5EGL3 22.5
GTEX-ZPU1-2126-SM-57WED 22.5
GTEX-145MH-2326-SM-5O9AW 22.4
GTEX-Y5V6-1726-SM-4VDSZ 22.4
GTEX-11GS4-2026-SM-5N9CP 22.3
GTEX-11OF3-1826-SM-5987N 22.3
GTEX-R55C-1426-SM-48FED 22.2
GTEX-XBED-2026-SM-4AT5D 22.2
GTEX-ZDYS-1326-SM-5IJFF 22.2
GTEX-NFK9-0126-SM-3LK5H 22.0
GTEX-11TT1-2226-SM-5GU6B 21.8
GTEX-111YS-2026-SM-5EGGL 21.7
GTEX-SNOS-1126-SM-4DM67 21.7
GTEX-1212Z-0326-SM-5FQSJ 21.6
GTEX-RM2N-1326-SM-48FCW 21.5
GTEX-1339X-1926-SM-5PNVP 21.4
GTEX-OXRL-2126-SM-3NM98 21.4
GTEX-Q2AI-1226-SM-48U14 21.4
GTEX-YEC4-1526-SM-4W1YU 21.3
GTEX-XBEC-0126-SM-4GIDT 21.2
GTEX-13OVH-0726-SM-5N9BU 21.1
GTEX-13FLW-2126-SM-5N9FD 21.0
GTEX-XAJ8-1326-SM-47JYT 21.0
GTEX-SUCS-1326-SM-4DM5T 20.8
GTEX-WZTO-0326-SM-4PQYZ 20.3
GTEX-ZAB5-2426-SM-5CVMW 20.3
GTEX-13111-1526-SM-5EGJX 20.2
GTEX-WOFM-1126-SM-4OOSB 20.1
GTEX-T8EM-0126-SM-4DM5R 20.0
GTEX-11EQ8-1426-SM-5EGJR 19.9
GTEX-11O72-0726-SM-5P9GO 19.6
GTEX-131XE-0426-SM-5IJF4 19.6
GTEX-ZT9X-1426-SM-5DUX1 19.6
GTEX-ZQUD-2026-SM-51MSM 19.5
GTEX-X3Y1-2626-SM-4PQZI 19.0
GTEX-V955-1926-SM-4KL1L 18.6
GTEX-132QS-1226-SM-5P9GD 18.4
GTEX-ZVZP-2226-SM-57WBF 18.4
GTEX-V1D1-2126-SM-4JBH4 18.2
GTEX-147JS-0126-SM-5S2TW 17.9
GTEX-117XS-2026-SM-5GID1 17.8
GTEX-12ZZY-0126-SM-5LZV2 17.8
GTEX-1399R-1626-SM-5P9GG 17.6
GTEX-ZTSS-1526-SM-51MTC 17.5
GTEX-T5JC-0726-SM-4DM55 17.2
GTEX-13NZA-2526-SM-5IJFX 17.0
GTEX-U8T8-1126-SM-4DXUE 16.8
GTEX-WVLH-2626-SM-4MVNV 16.8
GTEX-13VXU-0726-SM-5J2O7 16.7
GTEX-13OW5-2526-SM-5L3I1 16.6
GTEX-QEG5-0126-SM-4R1JR 16.6
GTEX-Z93S-1726-SM-5HL8G 16.6
GTEX-13OVL-0426-SM-5IFG6 16.4
GTEX-ZYFC-0126-SM-5GIEH 16.4
GTEX-X5EB-2026-SM-4E3KA 16.2
GTEX-OOBK-2126-SM-3LK5T 15.4
GTEX-11LCK-2326-SM-5HL53 15.2
GTEX-11NUK-2626-SM-5A5MB 15.1
GTEX-Q2AH-1526-SM-48TZG 15.1
GTEX-REY6-0126-SM-48FDT 15.1
GTEX-117YW-1526-SM-5EGGP 15.0
GTEX-144GL-0726-SM-5LU4P 14.7
GTEX-XLM4-1526-SM-4AT6D 14.7
GTEX-144GM-0426-SM-5Q5C8 14.2
GTEX-S95S-1126-SM-4B64E 14.0
GTEX-P4QR-0226-SM-3NMCH 13.9
GTEX-QEG4-0126-SM-48TZE 13.8
GTEX-WH7G-1926-SM-4LVMM 13.8
GTEX-12WSL-2326-SM-5DUXQ 13.6
GTEX-139TS-1726-SM-5IJG5 13.6
GTEX-OOBJ-2126-SM-3NB1N 13.5
GTEX-S7PM-0626-SM-4AD4Q 13.5
GTEX-T6MN-2026-SM-4DM7L 13.5
GTEX-XQ3S-2726-SM-4BOP2 13.5
GTEX-12WSM-1326-SM-5GCP9 13.4
GTEX-145MO-0126-SM-5S2QU 13.3
GTEX-UPJH-0126-SM-4IHLL 13.3
GTEX-13N1W-2626-SM-5IJEP 12.6
GTEX-QV31-1126-SM-4R1K4 12.4
GTEX-WK11-0326-SM-4OOS6 12.1
GTEX-U8XE-0126-SM-4E3I3 11.7
GTEX-N7MS-0126-SM-3TW8O 11.6
GTEX-11ZUS-2726-SM-5FQUA 11.4
GTEX-13112-0226-SM-5P9IV 10.8
GTEX-Y111-2426-SM-4TT23 10.4
GTEX-14ABY-0626-SM-5Q5C9 10.3
GTEX-14753-0626-SM-5Q5CY 10.1
GTEX-11NV4-1726-SM-5N9FC 9.7
GTEX-11WQC-2326-SM-5EQKE 9.4
GTEX-11TUW-2226-SM-5EQL9 8.9
GTEX-13O1R-0726-SM-5IJEI 7.3
GTEX-RUSQ-2126-SM-47JXK 7.3
GTEX-13FHP-2826-SM-5IJFW 7.2
GTEX-111VG-1926-SM-5GIDO 5.7
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

538.2

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 538.2
FF:10096-102C6 14-64 years, male 721.7
FF:10026-101D8 34,53,86 years, male 354.7

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