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TISSUE ATLAS PRIMARY DATA PANCREAS

GENE/PROTEIN

Antibody validation


Dictionary

Pancreas

Tissue proteome

Pancreas

PANCREAS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:1850.8TPM
GTEx:1720.3RPKM
FANTOM5:5297.6Tags Per Million

PANCREAS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Exocrine glandular cells:Not detected
Islets of Langerhans:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA004932

 

Antibody CAB000048

 

Antibody CAB012098

 

Antibody CAB053843

 

Exocrine glandular cells

Not detected   Not detected   Not detected   Not detected  

Islets of Langerhans

High   High   High   High  
       
       
       

PANCREAS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

1850.8

overview Female, age 59
Sample 1
TPM: 2434.5
Cell types%
Exocrine glandular cells: 75
Islets of Langerhans: 10
Ductal cells: 5
Other cell types: 10
overview Male, age 60
Sample 2
TPM: 1267.1
Cell types%
Exocrine glandular cells: 90
Islets of Langerhans: 5
Ductal cells: 5

PANCREAS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

1720.3

GTEx sample id

RPKM

 

Pancreas

Pancreas
RPKM: 1720.3
Samples: 171

Max RPKM: 15473
Min RPKM: 0.1
Std RPKM: 1598.1
Median RPKM: 1315.6
GTEX-XYKS-1226-SM-4BRVI 15473.0
GTEX-ZF3C-2026-SM-4WWB5 7407.1
GTEX-ZZPU-0726-SM-5N9C8 6926.5
GTEX-11I78-0626-SM-5A5LZ 5304.4
GTEX-NPJ8-2126-SM-3MJGK 5133.2
GTEX-Q2AH-0926-SM-48TZK 5019.9
GTEX-V955-0326-SM-4JBGV 4938.2
GTEX-13FTX-1226-SM-5IFGN 4453.6
GTEX-WFJO-0626-SM-4LVMC 3971.0
GTEX-144FL-1526-SM-5Q5CA 3835.3
GTEX-QLQ7-0626-SM-4R1JT 3755.5
GTEX-14E6E-1426-SM-5RQI2 3603.9
GTEX-YF7O-1326-SM-4W1ZR 3396.8
GTEX-WQUQ-2126-SM-4OOSO 3335.0
GTEX-ZPIC-0926-SM-4WWFK 3312.5
GTEX-145ME-0326-SM-5S2QO 3299.6
GTEX-1399R-0426-SM-5IJE3 3210.6
GTEX-OHPM-1026-SM-3LK74 3209.9
GTEX-146FQ-1526-SM-5Q5CX 3165.1
GTEX-ZYY3-0826-SM-5E44R 3075.9
GTEX-V1D1-0726-SM-4JBH7 2990.6
GTEX-PW2O-0826-SM-48TC5 2958.3
GTEX-WHWD-0726-SM-4OORX 2951.5
GTEX-XBEW-1626-SM-4SOJP 2944.2
GTEX-XBED-0226-SM-47JY8 2940.2
GTEX-14ICL-1126-SM-5S2RE 2899.9
GTEX-ZTPG-1026-SM-5DUWP 2868.9
GTEX-S95S-0726-SM-4B64H 2808.5
GTEX-13CF3-1026-SM-5LZWY 2758.0
GTEX-RWS6-1126-SM-47JXC 2732.3
GTEX-YB5E-0526-SM-4VDSD 2588.2
GTEX-11XUK-0626-SM-5N9ES 2555.2
GTEX-PLZ6-0726-SM-3P619 2502.0
GTEX-OHPL-1026-SM-3MJGI 2499.1
GTEX-SE5C-0326-SM-4BRWX 2378.6
GTEX-144GN-0826-SM-5LU5G 2362.8
GTEX-132AR-1826-SM-5EGHR 2352.3
GTEX-12WSN-0826-SM-5GCOF 2226.7
GTEX-14AS3-0326-SM-5Q5DB 2206.5
GTEX-XPVG-0326-SM-4B653 2193.1
GTEX-QV44-0426-SM-4R1KF 2145.4
GTEX-1128S-0826-SM-5GZZI 2134.4
GTEX-T5JW-0226-SM-4DM7I 2088.7
GTEX-Y5LM-0526-SM-4V6G3 2085.5
GTEX-12WSL-0426-SM-5GCNX 2023.3
GTEX-WFG7-0426-SM-4LMK5 1986.3
GTEX-PWOO-0626-SM-48TZH 1894.0
GTEX-11LCK-0226-SM-5A5M6 1883.2
GTEX-QEL4-1326-SM-447AD 1796.3
GTEX-X3Y1-0726-SM-3P5YU 1772.5
GTEX-Y3IK-0426-SM-4WWE2 1771.2
GTEX-S33H-1226-SM-4AD69 1753.9
GTEX-ZYFG-0826-SM-5BC5T 1753.3
GTEX-XXEK-1726-SM-4BRVB 1753.2
GTEX-S32W-0826-SM-4AD5Z 1750.2
GTEX-ZC5H-0826-SM-5N9FH 1748.2
GTEX-X4LF-0326-SM-4QAS9 1745.0
GTEX-XUW1-1726-SM-4BOOZ 1740.6
GTEX-PSDG-1526-SM-48TCY 1737.9
GTEX-11EQ9-1026-SM-5H134 1720.1
GTEX-TML8-0526-SM-32QOQ 1716.7
GTEX-WFG8-0326-SM-4LVN4 1661.9
GTEX-12WSK-0226-SM-5BC62 1647.8
GTEX-YB5K-1826-SM-5IFJC 1647.7
GTEX-117YX-0226-SM-5EGH6 1643.9
GTEX-R55G-0326-SM-48FDM 1635.2
GTEX-13FH7-1426-SM-5IFIC 1594.0
GTEX-RM2N-0326-SM-48FD8 1589.6
GTEX-13O1R-1826-SM-5KM3B 1529.7
GTEX-13W3W-1026-SM-5IFG4 1518.3
GTEX-145MN-1426-SM-5SI9H 1505.2
GTEX-XMK1-0326-SM-4B652 1500.2
GTEX-12BJ1-1126-SM-5EGGG 1484.0
GTEX-ZAB5-0826-SM-5P9FU 1478.0
GTEX-X15G-0726-SM-4PQZ5 1470.8
GTEX-11TT1-0326-SM-5LUAY 1433.6
GTEX-Y5V5-1026-SM-5LUAH 1433.1
GTEX-ZYW4-2126-SM-59HJ9 1425.9
GTEX-TKQ2-0426-SM-4DXUO 1420.0
GTEX-Y8LW-1026-SM-5IFJY 1393.6
GTEX-11VI4-0426-SM-5EGHZ 1375.8
GTEX-139YR-1526-SM-5IFJ1 1352.9
GTEX-NFK9-1626-SM-3LK5J 1331.2
GTEX-SUCS-1426-SM-4DM5W 1324.0
GTEX-WH7G-0826-SM-4LVMR 1318.1
GTEX-11P7K-0526-SM-5BC5I 1315.6
GTEX-ZV7C-0726-SM-59HKH 1308.5
GTEX-XV7Q-0926-SM-4BRVQ 1283.5
GTEX-XQ8I-1926-SM-4BOOK 1279.3
GTEX-R55D-1426-SM-48FEN 1273.7
GTEX-ZLWG-0326-SM-4WWC7 1253.3
GTEX-TMMY-1326-SM-4DXU9 1251.9
GTEX-R53T-0426-SM-48FEM 1244.9
GTEX-YFCO-1026-SM-5LU9S 1238.3
GTEX-131XF-1426-SM-5BC68 1230.2
GTEX-ZAB4-1726-SM-5HL8C 1220.1
GTEX-1211K-1126-SM-5EGGB 1218.5
GTEX-Y114-0826-SM-4TT77 1209.3
GTEX-QDVN-0926-SM-2I5GL 1202.2
GTEX-SIU7-0926-SM-4BRX1 1184.0
GTEX-P4PP-1026-SM-3NM9O 1180.7
GTEX-13U4I-1526-SM-5IFFF 1150.6
GTEX-13X6H-0626-SM-5LU53 1148.2
GTEX-1399U-0926-SM-5IFHA 1130.0
GTEX-QV31-0226-SM-447BO 1129.2
GTEX-WI4N-1826-SM-4OOSF 1074.8
GTEX-T8EM-0826-SM-4DM76 1068.5
GTEX-Q2AI-0426-SM-48U13 1054.8
GTEX-QDVJ-1226-SM-48U1V 1047.2
GTEX-P4PQ-1026-SM-3NMCN 1027.9
GTEX-13FTW-0526-SM-5IFIP 1027.7
GTEX-13PL7-2226-SM-5L3IC 1026.0
GTEX-ZP4G-0426-SM-4YCER 981.5
GTEX-O5YT-1026-SM-3MJGF 976.3
GTEX-XGQ4-0226-SM-4GIDS 975.1
GTEX-13FLV-0626-SM-5IFEY 962.1
GTEX-13OVI-0526-SM-5IFFQ 942.3
GTEX-OOBJ-1026-SM-3NB2L 939.3
GTEX-146FR-0126-SM-5Q5F3 938.6
GTEX-YEC4-1326-SM-5IFHG 930.8
GTEX-131XG-1426-SM-5GCMO 923.7
GTEX-Y8E4-1326-SM-5IFIY 905.5
GTEX-12WSG-1026-SM-5EGII 888.5
GTEX-QMRM-0326-SM-4R1K5 881.3
GTEX-ZVT2-2026-SM-5NQ8Q 869.6
GTEX-S4P3-0626-SM-4AD59 857.8
GTEX-111CU-0526-SM-5EGHK 856.2
GTEX-UJMC-1126-SM-3GADP 837.0
GTEX-ZG7Y-0326-SM-4WWEY 836.2
GTEX-ZVZP-0626-SM-59HL5 834.1
GTEX-Q734-0426-SM-48TZX 820.5
GTEX-Y9LG-0726-SM-4VDS3 812.9
GTEX-11ONC-0526-SM-5BC57 810.9
GTEX-111YS-1226-SM-5EGGJ 799.3
GTEX-WYVS-0926-SM-4SOJV 783.5
GTEX-QCQG-0426-SM-48U29 754.2
GTEX-W5WG-0826-SM-4RGNE 750.5
GTEX-11NSD-0526-SM-5A5LT 747.4
GTEX-S3XE-0526-SM-4AD4G 746.3
GTEX-WRHK-0226-SM-4MVOH 745.3
GTEX-P4QS-1026-SM-3NMCW 737.0
GTEX-U4B1-0726-SM-4DXUA 730.5
GTEX-PX3G-1026-SM-48TZW 724.1
GTEX-UJHI-0626-SM-3DB8T 721.8
GTEX-SNOS-0926-SM-4DM7A 704.2
GTEX-YEC3-0626-SM-5IFHZ 697.8
GTEX-UPIC-0726-SM-3GADW 689.5
GTEX-1122O-0726-SM-5GIEV 687.8
GTEX-ZT9W-0926-SM-57WFS 650.8
GTEX-OOBK-1026-SM-48TC2 637.1
GTEX-13N11-0226-SM-5KM3C 632.2
GTEX-13O61-2126-SM-5IJEO 628.5
GTEX-Y3I4-0826-SM-4TT2A 623.8
GTEX-132QS-0926-SM-5P9GB 623.1
GTEX-ZPU1-0226-SM-4WWC9 604.1
GTEX-VJYA-0826-SM-4KL1M 591.0
GTEX-ZLFU-0726-SM-57WF6 564.3
GTEX-ZYWO-1326-SM-5SI8X 530.7
GTEX-WFON-0626-SM-4LVLX 491.3
GTEX-13VXT-1226-SM-5LU3M 490.8
GTEX-X5EB-0526-SM-46MVP 483.7
GTEX-ZVP2-0726-SM-59HKY 455.6
GTEX-11DXX-0926-SM-5H112 384.7
GTEX-1497J-0426-SM-5Q5CO 342.0
GTEX-131XE-1926-SM-5IFER 332.7
GTEX-145MO-2126-SM-5Q5CZ 248.0
GTEX-1339X-1026-SM-5IFH5 6.8
GTEX-QLQW-0326-SM-447A8 4.7
GTEX-13D11-2226-SM-5IFEO 0.2
GTEX-13YAN-2126-SM-5Q5C4 0.2
GTEX-1399S-0326-SM-5IFFS 0.1
Show all

PANCREAS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

5297.6

FANTOM5 sample id

Sample description

Tags Per Million

Pancreas
Tags Per Million: 5297.6
FF:10049-101G4 52 years, male 5297.6

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