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TISSUE ATLAS PRIMARY DATA CEREBELLUM

GENE/PROTEIN

Antibody validation


Dictionary

Cerebellum

CEREBELLUM - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:14.9RPKM
FANTOM5:37.7Tags Per Million

CEREBELLUM - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in granular layer:Not detected
Cells in molecular layer:Not detected
Purkinje cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB000459

 

Cells in granular layer

Not detected  

Cells in molecular layer

Not detected  

Purkinje cells

Not detected  
 
 
 

CEREBELLUM - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


CEREBELLUM - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

14.9

GTEx sample id

RPKM

 

Brain - Cerebellar Hemisphere

Brain - Cerebellar Hemisphere
RPKM: 15.6
Samples: 105

Max RPKM: 31.6
Min RPKM: 6
Std RPKM: 3.6
Median RPKM: 15
GTEX-13OVJ-0011-R11a-SM-5P9H8 31.6
GTEX-X585-0011-R11B-SM-46MUZ 29.1
GTEX-WHSE-0011-R11A-SM-3P5YY 22.1
GTEX-WVLH-0011-R11A-SM-3MJFO 21.9
GTEX-13X6J-0011-R11a-SM-5P9HE 20.6
GTEX-13G51-0011-R11b-SM-5J2NE 20.4
GTEX-11H98-0011-R11b-SM-5NQ6U 20.2
GTEX-WZTO-0011-R11A-SM-4E3K9 20.1
GTEX-Z93S-0011-R11a-SM-4RGNN 20.0
GTEX-145MH-0011-R11a-SM-5P9HQ 19.9
GTEX-13X6K-0011-R11a-SM-5P9F5 19.4
GTEX-N7MS-0011-R11A-SM-2HMJS 19.4
GTEX-12WSM-0011-R11a-SM-5DUX8 19.2
GTEX-WL46-0011-R11A-SM-3MJFT 19.2
GTEX-12ZZX-0011-R11a-SM-5DUVJ 19.0
GTEX-139TT-0011-R11b-SM-5LZV1 18.9
GTEX-1313W-0011-R11a-SM-5DUXN 18.7
GTEX-12WSI-0011-R11b-SM-5P9EZ 18.5
GTEX-13NYS-0011-R11b-SM-5MR4P 18.5
GTEX-13OVH-0011-R11b-SM-5KM4X 18.5
GTEX-13FLV-0011-R11a-SM-5LZZ7 18.4
GTEX-13N2G-0011-R11a-SM-5MR3F 18.4
GTEX-13O3Q-0011-R11b-SM-5KM2W 18.3
GTEX-S7SE-0011-R11A-SM-2XCDD 18.3
GTEX-ZUA1-0011-R11b-SM-51MTI 18.1
GTEX-NL4W-0011-R11A-SM-2I3DW 17.9
GTEX-P44H-0011-R11A-SM-2XCER 17.8
GTEX-QDT8-0011-R11A-SM-32PKD 17.8
GTEX-132Q8-0011-R11b-SM-5DUW9 17.6
GTEX-13FXS-0011-R11a-SM-5L3DM 17.5
GTEX-X4EP-0011-R11B-SM-4QASK 17.3
GTEX-YFC4-0011-R11a-SM-4SOK6 17.3
GTEX-12WSC-0011-R11a-SM-5GU5J 17.2
GTEX-X261-0011-R11A-SM-4E3JY 17.2
GTEX-11GSP-0011-R11b-SM-5NQ7V 16.8
GTEX-11ZUS-0011-R11b-SM-5BC7B 16.8
GTEX-14ABY-0011-R11a-SM-5SI7C 16.6
GTEX-T2IS-0011-R11A-SM-32QPC 16.4
GTEX-T5JC-0011-R11A-SM-32PMB 16.2
GTEX-13SLX-0011-R11b-SM-5O9C8 16.0
GTEX-13OW6-0011-R11a-SM-5L3H2 15.9
GTEX-WWYW-0011-R11A-SM-3NB38 15.9
GTEX-13X6I-0011-R11a-SM-5P9HN 15.8
GTEX-TSE9-0011-R11A-SM-3DB7N 15.7
GTEX-Y8DK-0011-R11A-SM-4SOK2 15.5
GTEX-12126-0011-R11a-SM-5BC6X 15.4
GTEX-12ZZZ-0011-R11a-SM-5EGLC 15.4
GTEX-13JUV-0011-R11a-SM-5LZYH 15.4
GTEX-144GL-0011-R11b-SM-5P9F6 15.4
GTEX-T6MN-0011-R11A-SM-32QOX 15.2
GTEX-11OF3-0011-R11a-SM-57WCR 15.0
GTEX-13S7M-0011-R11b-SM-5P9HU 15.0
GTEX-NPJ8-0011-R11A-SM-2YUMS 15.0
GTEX-13FHO-0011-R11b-SM-5LZYQ 14.9
GTEX-13O3O-0011-R11b-SM-5KM4G 14.9
GTEX-131YS-0011-R11b-SM-5EGLM 14.8
GTEX-13FTY-0011-R11a-SM-5IJEA 14.8
GTEX-13NYB-0011-R11a-SM-5KM3Q 14.8
GTEX-X4XX-0011-R11A-SM-46MWQ 14.8
GTEX-13OW7-0011-R11a-SM-5O9DY 14.6
GTEX-Q2AG-0011-R11A-SM-2HMKZ 14.6
GTEX-131XH-0011-R11a-SM-5EGLN 14.5
GTEX-13OW5-0011-R11b-SM-5L3GG 14.5
GTEX-13VXU-0011-R11b-SM-5O9DJ 14.5
GTEX-13OVL-0011-R11b-SM-5L3G7 14.2
GTEX-ZAB4-0011-R11a-SM-4SOKI 14.2
GTEX-NL3H-0011-R11A-SM-2I3E6 14.1
GTEX-NPJ7-0011-R11A-SM-2I3E8 14.1
GTEX-QMR6-0011-R11A-SM-32PKK 14.1
GTEX-ZVZQ-0011-R11a-SM-51MS6 14.1
GTEX-1399T-0011-R11a-SM-5J2O1 14.0
GTEX-XMD1-0011-R11A-SM-4AT5J 14.0
GTEX-13RTJ-0011-R11a-SM-5O9CK 13.9
GTEX-YJ89-0011-R11a-SM-4SOKA 13.9
GTEX-ZDXO-0011-R11a-SM-4WWD9 13.9
GTEX-13PVQ-0011-R11a-SM-5O9DU 13.7
GTEX-13SLW-0011-R11a-SM-5SI8Q 13.7
GTEX-UTHO-0011-R11A-SM-3GIJE 13.7
GTEX-12WSE-0011-R11b-SM-5P9JW 13.6
GTEX-13CF2-0011-R11b-SM-5LZXO 13.6
GTEX-XOTO-0011-R11B-SM-4B64O 13.5
GTEX-12WSH-0011-R11a-SM-5LZVM 13.4
GTEX-14BIN-0011-R11a-SM-5SI79 13.4
GTEX-ZVT3-0011-R11b-SM-57WBI 13.3
GTEX-14BIM-0011-R11b-SM-5S2RN 13.2
GTEX-R55E-0011-R11A-SM-2TC6I 13.2
GTEX-13FHP-0011-R11b-SM-5LZXP 13.1
GTEX-13JVG-0011-R11a-SM-5KM53 12.8
GTEX-RU72-0011-R11A-SM-5SI8G 12.8
GTEX-RVPV-0011-R11A-SM-2TF6F 12.7
GTEX-12WSF-0011-R11a-SM-5LZVT 12.4
GTEX-13QIC-0011-R11b-SM-5O9BU 12.4
GTEX-145MI-0011-R11a-SM-5P9JZ 12.4
GTEX-13OW8-0011-R11a-SM-5L3GT 12.0
GTEX-ZE7O-0011-R11a-SM-57WBC 11.6
GTEX-13NZA-0011-R11b-SM-5KM4W 11.5
GTEX-13PLJ-0011-R11b-SM-5O9BS 10.6
GTEX-11WQC-0011-R11b-SM-57WD6 10.4
GTEX-13CZV-0011-R11b-SM-5N9FN 10.0
GTEX-145LU-0011-R11b-SM-5P9JX 9.9
GTEX-12WSB-0011-R11b-SM-57WBJ 9.0
GTEX-139UW-0011-R11a-SM-5IJGN 8.9
GTEX-OHPN-0011-R11A-SM-2I5FM 8.9
GTEX-ZF28-0011-R11a-SM-4WWEI 7.4
GTEX-131XW-0011-R11a-SM-5DUV9 6.0
Show all
 

Brain - Cerebellum

Brain - Cerebellum
RPKM: 14.4
Samples: 125

Max RPKM: 28.4
Min RPKM: 10.1
Std RPKM: 2.6
Median RPKM: 13.9
GTEX-13OVJ-2726-SM-5IJG6 28.4
GTEX-R55E-2526-SM-2TC6H 24.2
GTEX-X4EP-3026-SM-3P5YP 20.8
GTEX-RU72-2926-SM-2TF66 20.7
GTEX-WVLH-2926-SM-3MJG5 20.1
GTEX-13FHO-2926-SM-5L3ES 19.8
GTEX-11GSP-3126-SM-5A5LL 18.8
GTEX-ZZPT-2926-SM-5EQ5S 18.3
GTEX-QVUS-2926-SM-3GIJB 17.9
GTEX-13OVH-2926-SM-5IJFH 17.8
GTEX-11ONC-3026-SM-5985W 17.7
GTEX-132Q8-2926-SM-5IFFP 17.7
GTEX-UTHO-2926-SM-3P5Z9 17.3
GTEX-139TT-2626-SM-5LZUB 17.2
GTEX-P44H-2426-SM-2XCEJ 17.1
GTEX-13OVL-3026-SM-5IJF1 17.0
GTEX-T6MN-2526-SM-32PMN 17.0
GTEX-ZAB4-2926-SM-57WCV 16.9
GTEX-WHSE-2926-SM-3NMBG 16.8
GTEX-ZAJG-3026-SM-5HL92 16.7
GTEX-11DXY-3126-SM-5N9BT 16.5
GTEX-12WSB-3026-SM-59HKM 16.2
GTEX-13JVG-3226-SM-5IJGJ 16.0
GTEX-12WSM-2126-SM-5GCOC 15.9
GTEX-12ZZY-2926-SM-5DUXO 15.9
GTEX-13JUV-3026-SM-5K7WX 15.8
GTEX-13X6K-2826-SM-5O9DS 15.8
GTEX-14A5I-2826-SM-5SIBF 15.8
GTEX-ZYY3-3026-SM-5GIEJ 15.8
GTEX-WZTO-2826-SM-3NM8P 15.6
GTEX-1313W-3026-SM-5LZUZ 15.4
GTEX-T2IS-2926-SM-32QPO 15.4
GTEX-11NUK-3026-SM-5986K 15.3
GTEX-11TTK-2826-SM-5GU5K 15.3
GTEX-13O3Q-3026-SM-5IJGD 15.3
GTEX-13OW5-3126-SM-5MR3Y 15.3
GTEX-TSE9-2926-SM-3DB77 15.3
GTEX-Y8DK-0726-SM-4TT3S 15.3
GTEX-QDT8-3026-SM-32PKB 15.2
GTEX-131YS-3026-SM-5EGHY 14.9
GTEX-1192X-3226-SM-5987D 14.8
GTEX-11EMC-3326-SM-5P9JH 14.8
GTEX-ZAK1-2926-SM-5HL9S 14.8
GTEX-13OW7-2926-SM-5MR3Z 14.7
GTEX-14ASI-2926-SM-5Q5DG 14.7
GTEX-14BIM-3126-SM-5Q5C7 14.7
GTEX-12WSD-3026-SM-5LZU7 14.6
GTEX-13G51-3126-SM-5IJG7 14.6
GTEX-13OW6-2926-SM-5KM29 14.6
GTEX-111FC-3326-SM-5GZYV 14.5
GTEX-117XS-3126-SM-5GIDP 14.5
GTEX-1399T-3126-SM-5IJFS 14.5
GTEX-YFC4-3026-SM-5IFJK 14.5
GTEX-13112-2926-SM-5DUWT 14.3
GTEX-13N2G-3126-SM-5IJGL 14.3
GTEX-14E7W-2926-SM-5S2R8 14.3
GTEX-XMD1-2826-SM-4AT5F 14.3
GTEX-12ZZX-2826-SM-5BC6K 14.2
GTEX-13PVQ-2926-SM-5L3HJ 14.2
GTEX-11ZUS-2826-SM-5EQKW 14.1
GTEX-Z93S-2826-SM-57WBL 14.1
GTEX-NPJ7-2826-SM-2I3FU 13.9
GTEX-X261-3126-SM-4PQZC 13.9
GTEX-13O3O-3026-SM-5KM42 13.8
GTEX-QVJO-1325-SM-2S1QX 13.8
GTEX-RNOR-2226-SM-2TF5O 13.8
GTEX-12WSC-2926-SM-5BC5Z 13.7
GTEX-145MH-2926-SM-5Q5D2 13.7
GTEX-S7SE-2526-SM-2XCDL 13.7
GTEX-X4XX-2926-SM-3NMB1 13.7
GTEX-ZYFD-2926-SM-5GID9 13.7
GTEX-11GSO-3026-SM-5Q5AL 13.6
GTEX-12WSH-3126-SM-5LZW8 13.6
GTEX-13X6I-2926-SM-5Q5C3 13.6
GTEX-ZUA1-2926-SM-59HL3 13.6
GTEX-QMR6-1326-SM-32PLB 13.5
GTEX-13QIC-3026-SM-5LU58 13.3
GTEX-N7MT-1226-SM-2D7W4 13.3
GTEX-WWYW-3026-SM-3NB36 13.3
GTEX-12126-0926-SM-5FQTW 13.2
GTEX-N7MS-2526-SM-2D7W3 13.2
GTEX-NPJ8-2626-SM-2D7W2 13.2
GTEX-Q2AG-2826-SM-2HMJQ 13.2
GTEX-YJ89-2926-SM-5P9IT 13.2
GTEX-11PRG-2826-SM-5BC54 13.1
GTEX-14C5O-2926-SM-5RQI1 13.1
GTEX-Y111-2826-SM-4TT3O 13.1
GTEX-139TS-3126-SM-5LZWX 12.9
GTEX-WL46-2826-SM-3LK81 12.9
GTEX-11DXW-1026-SM-5H11K 12.8
GTEX-1269C-3126-SM-5EGI6 12.8
GTEX-14DAQ-3026-SM-5S2QZ 12.8
GTEX-T5JC-2326-SM-32PMR 12.8
GTEX-11O72-2826-SM-5HL6W 12.7
GTEX-13FXS-3026-SM-5LZYO 12.5
GTEX-13NYB-3226-SM-5J2ND 12.5
GTEX-PVOW-2626-SM-32PL8 12.5
GTEX-XLM4-2926-SM-4AT59 12.5
GTEX-13S7M-3026-SM-5S2QQ 12.4
GTEX-11DYG-2926-SM-5H132 12.3
GTEX-11DZ1-2926-SM-5A5KI 12.3
GTEX-14BIN-3326-SM-5Q5E6 12.3
GTEX-11OF3-3126-SM-5GU5E 12.2
GTEX-11ZVC-3026-SM-59HJM 12.2
GTEX-144GL-2926-SM-5O99F 12.2
GTEX-11NV4-2226-SM-5BC4T 12.0
GTEX-13RTJ-3126-SM-5S2Q4 12.0
GTEX-131XH-2926-SM-5LZU4 11.9
GTEX-11EI6-2926-SM-5985U 11.8
GTEX-13OW8-2926-SM-5L3FV 11.8
GTEX-13FHP-2926-SM-5IJG9 11.7
GTEX-11ZTS-3226-SM-5EGID 11.6
GTEX-145MG-3126-SM-5Q5D3 11.6
GTEX-12ZZZ-3126-SM-5LZU6 11.5
GTEX-PWO3-1026-SM-2I5F2 11.5
GTEX-1128S-2826-SM-5N9DI 11.2
GTEX-13VXU-3026-SM-5LU3K 11.1
GTEX-145LS-3026-SM-5O99S 11.1
GTEX-R55F-1226-SM-2TF59 11.1
GTEX-XOTO-2926-SM-4B65G 11.1
GTEX-147F4-3026-SM-5Q5BJ 10.8
GTEX-ZVT3-2926-SM-5GU6M 10.8
GTEX-13CF2-3026-SM-5IFFX 10.6
GTEX-12WSE-2926-SM-5RQJ9 10.2
GTEX-145LU-2626-SM-5LU9Z 10.1
Show all

CEREBELLUM - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

37.7

FANTOM5 sample id

Sample description

Tags Per Million

Cerebellum
Tags Per Million: 37.7
FF:10166-103B4 76 years, female 48.2
FF:10083-102B2 22-68 years, mixed 27.2

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