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TISSUE ATLAS PRIMARY DATA PROSTATE

GENE/PROTEIN

Antibody validation


Dictionary

Prostate

Tissue proteome

Prostate

PROSTATE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:103.3TPM
GTEx:29.9RPKM
FANTOM5:92.5Tags Per Million

PROSTATE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB000459

 

Glandular cells

Low  
 
 
 

PROSTATE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

103.3

overview Male, age 62
Sample 1
TPM: 74.8
Cell types%
Glandular cells: 30
Smooth muscle cells: 55
Skeletal muscle cells: 5
Other cell types: 10
N/A Male, age 65
Sample 2
TPM: 86.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 60
Other cell types: 20
overview Male, age 65
Sample 3
TPM: 78.7
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 68
Sample 4
TPM: 96.1
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 60
Sample 5
TPM: 118.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 55
Other cell types: 5
overview Male, age 66
Sample 6
TPM: 124.0
Cell types%
Glandular cells: 50
Smooth muscle cells: 45
Other cell types: 5
overview Male, age 63
Sample 7
TPM: 106.8
Cell types%
Glandular cells: 60
Smooth muscle cells: 35
Other cell types: 5
overview Male, age 66
Sample 8
TPM: 103.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 30
Other cell types: 5
overview Male, age 58
Sample 9
TPM: 130.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 50
Other cell types: 5

PROSTATE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

29.9

GTEx sample id

RPKM

 

Prostate

Prostate
RPKM: 29.9
Samples: 106

Max RPKM: 64.8
Min RPKM: 11.4
Std RPKM: 9.8
Median RPKM: 29.6
GTEX-XPVG-2026-SM-4B65E 64.8
GTEX-14E6E-1126-SM-5S2R4 60.1
GTEX-U8XE-2526-SM-4E3IT 56.4
GTEX-YJ8A-1126-SM-5IFJU 52.5
GTEX-S3XE-1326-SM-4AD4H 50.9
GTEX-VJYA-1226-SM-3GIJ6 50.8
GTEX-XGQ4-1826-SM-4AT6F 45.8
GTEX-12696-2226-SM-5EQ65 45.6
GTEX-13O61-1726-SM-5KM46 44.7
GTEX-11TT1-2026-SM-5EQM8 42.0
GTEX-12BJ1-1226-SM-5LUAE 40.8
GTEX-WFG7-1826-SM-3GIL1 40.7
GTEX-11P7K-0626-SM-5985Z 39.9
GTEX-ZTX8-1026-SM-5EGHD 39.3
GTEX-13NYS-1026-SM-5KLZT 38.8
GTEX-11EQ9-1726-SM-5HL6U 38.2
GTEX-13N2G-1826-SM-5KM1I 37.5
GTEX-WK11-2626-SM-4OOSK 37.4
GTEX-13111-1326-SM-5GCNO 37.1
GTEX-1399T-1226-SM-5P9J5 37.1
GTEX-YB5E-1826-SM-5IFI4 36.5
GTEX-SNOS-1026-SM-4DM4Y 36.3
GTEX-ZLFU-1726-SM-4WWBU 36.1
GTEX-12ZZZ-2026-SM-5LZWJ 35.6
GTEX-132QS-1126-SM-5P9GC 35.4
GTEX-ZDYS-1226-SM-5IJF3 35.2
GTEX-ZVP2-0826-SM-59HJ6 34.9
GTEX-14C5O-2826-SM-5RQI6 34.3
GTEX-111YS-1726-SM-5GIED 33.5
GTEX-13RTJ-2126-SM-5S2PZ 33.5
GTEX-V955-1826-SM-4JBIL 33.4
GTEX-ZT9W-1626-SM-4YCDQ 33.3
GTEX-ZTTD-2726-SM-57WFA 33.3
GTEX-QLQ7-1326-SM-4R1JY 33.1
GTEX-XMK1-1026-SM-4B65H 32.9
GTEX-11NSD-0826-SM-5986S 32.7
GTEX-OOBK-2025-SM-3LK5S 32.6
GTEX-Y8E4-2126-SM-5RQHO 32.6
GTEX-S4Q7-1026-SM-4AD75 32.1
GTEX-148VJ-1826-SM-5Q5DV 31.7
GTEX-RM2N-1126-SM-48FCY 31.7
GTEX-PLZ6-1126-SM-3P5ZR 31.5
GTEX-XAJ8-0626-SM-47JY4 31.1
GTEX-QV31-1026-SM-4R1K3 31.0
GTEX-117YX-1526-SM-5H12T 30.9
GTEX-WOFM-0326-SM-4OOSL 30.7
GTEX-WFON-1626-SM-4LVMV 30.6
GTEX-1399R-0526-SM-5IJEF 30.1
GTEX-13FTW-1226-SM-5LZZ1 30.0
GTEX-Y9LG-1826-SM-4VBQC 30.0
GTEX-QMRM-1426-SM-4R1K8 29.9
GTEX-111CU-1526-SM-5N9FS 29.7
GTEX-13O21-1126-SM-5N9EV 29.7
GTEX-11WQK-2726-SM-5EQMU 29.5
GTEX-ZPU1-2026-SM-57WFI 29.5
GTEX-NPJ8-2426-SM-3MJHL 29.4
GTEX-131XF-1926-SM-5DUW4 29.0
GTEX-11P82-1126-SM-5BC5K 28.9
GTEX-ZY6K-1526-SM-5GZXE 28.4
GTEX-WFG8-1826-SM-4LVM4 27.5
GTEX-YF7O-1926-SM-4W1YQ 27.4
GTEX-S95S-1026-SM-4B64M 27.3
GTEX-U3ZM-0926-SM-4DXSW 27.0
GTEX-139T6-1526-SM-5P9G6 26.6
GTEX-11OF3-1726-SM-5GU5Q 26.0
GTEX-13OW8-0426-SM-5J2NR 26.0
GTEX-11ZUS-2126-SM-5N9E6 25.9
GTEX-WH7G-1726-SM-4LVKY 25.9
GTEX-T8EM-1826-SM-4DM7F 25.5
GTEX-11O72-2726-SM-5HL6K 25.0
GTEX-REY6-2126-SM-48FD9 25.0
GTEX-13FHO-2826-SM-5K7ZA 24.8
GTEX-12C56-1326-SM-5FQSV 24.7
GTEX-XQ3S-2526-SM-4BOOG 24.7
GTEX-Q2AI-1126-SM-48U19 24.4
GTEX-SNMC-0926-SM-4DM5U 24.1
GTEX-117YW-1426-SM-5EGGO 23.8
GTEX-QV44-1526-SM-4R1KI 23.6
GTEX-SJXC-2026-SM-4DM6N 23.6
GTEX-S33H-1826-SM-4AD65 23.4
GTEX-U4B1-1426-SM-4DXTX 23.3
GTEX-QEG4-2226-SM-4R1JM 23.2
GTEX-14ABY-0726-SM-5Q5DF 23.1
GTEX-OOBJ-2026-SM-3NB1R 23.0
GTEX-144GM-0826-SM-5O98R 21.7
GTEX-X5EB-1826-SM-4E3K8 21.7
GTEX-OIZH-2026-SM-3NB1M 21.6
GTEX-146FQ-1726-SM-5QGPX 20.9
GTEX-11TUW-2126-SM-5GU7B 20.7
GTEX-13G51-2326-SM-5LZXV 20.7
GTEX-ZZ64-0926-SM-5E44L 20.6
GTEX-13FXS-2826-SM-5LZYC 20.2
GTEX-UTHO-2726-SM-4JBH9 20.0
GTEX-U412-2026-SM-4DXSI 19.7
GTEX-14BMV-2326-SM-5RQJ4 19.1
GTEX-111FC-2026-SM-5GZYO 18.1
GTEX-WZTO-0926-SM-4PQZ3 17.1
GTEX-11DYG-2526-SM-5N9BB 16.8
GTEX-RWSA-2026-SM-47JX8 16.8
GTEX-145LT-0626-SM-5O99E 15.9
GTEX-ZUA1-2826-SM-59HLE 15.1
GTEX-132NY-2826-SM-5P9G2 15.0
GTEX-XOTO-2826-SM-4B65I 13.8
GTEX-V1D1-1926-SM-4JBGX 13.0
GTEX-145LV-1226-SM-5S2QH 12.7
GTEX-NFK9-2226-SM-3MJGP 11.4
Show all

PROSTATE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

92.5

FANTOM5 sample id

Sample description

Tags Per Million

Prostate
Tags Per Million: 92.5
FF:10022-101D4 73,79,93 years, male 92.5

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The Human Protein Atlas project is funded
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