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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 104.4
Min RPKM: 8.7
Std RPKM: 21.5
Median RPKM: 39.7
GTEX-11WQK-2926-SM-5EQKT
104.4
GTEX-XMK1-2626-SM-4B65R
103.7
GTEX-ZA64-1726-SM-5CVMF
96.5
GTEX-13111-2326-SM-5LZUQ
88.4
GTEX-1314G-2026-SM-5LZUM
82.0
GTEX-ZQG8-2126-SM-4YCF1
66.9
GTEX-13OVI-2326-SM-5KM47
66.5
GTEX-1339X-2326-SM-5HL5B
62.1
GTEX-13NYC-2626-SM-5K7VN
60.7
GTEX-ZXG5-2826-SM-5NQ8T
60.3
GTEX-146FR-1226-SM-5SIA7
56.9
GTEX-11P82-0926-SM-5986X
56.6
GTEX-13O21-1926-SM-5MR39
53.1
GTEX-11TUW-2426-SM-5EQKB
53.0
GTEX-1117F-3026-SM-5GZYU
52.0
GTEX-YF7O-2226-SM-5CVN8
50.0
GTEX-Y3I4-1926-SM-4TT8L
49.8
GTEX-11ZTT-2226-SM-5CVLP
49.3
GTEX-11P81-2026-SM-5P9GT
49.2
GTEX-13113-1526-SM-5EGHV
47.1
GTEX-X15G-2126-SM-4PQZR
44.8
GTEX-WYVS-2026-SM-4RGNS
44.2
GTEX-145ME-1626-SM-5RQI3
44.1
GTEX-ZC5H-2726-SM-5KLZW
43.7
GTEX-X5EB-1726-SM-4E3J7
41.9
GTEX-13JVG-2926-SM-5J2N9
41.8
GTEX-WOFM-2126-SM-4OOSR
41.3
GTEX-111FC-2926-SM-5GZY7
40.8
GTEX-XGQ4-2626-SM-4AT6B
39.7
GTEX-X261-2426-SM-4PQZU
37.8
GTEX-X3Y1-1926-SM-4PQZO
37.3
GTEX-Y5V6-2226-SM-4VDTC
36.6
GTEX-1445S-2926-SM-5O993
36.4
GTEX-131XF-2826-SM-5EGKH
35.5
GTEX-13QJC-2326-SM-5Q5CD
34.4
GTEX-11EQ9-2026-SM-5P9JI
32.4
GTEX-WFJO-2026-SM-4LVM3
31.7
GTEX-12WSL-2126-SM-5GCNG
31.7
GTEX-YB5K-1726-SM-5IFIZ
31.3
GTEX-ZQUD-2126-SM-51MSY
30.9
GTEX-Y111-2626-SM-4TT24
30.8
GTEX-13G51-2426-SM-5LZY8
29.9
GTEX-13CF2-2426-SM-5LZYL
27.7
GTEX-14B4R-1426-SM-5Q5CG
26.8
GTEX-XV7Q-2426-SM-4BRV8
25.7
GTEX-12WSM-1826-SM-5BC64
22.8
GTEX-13NYB-2426-SM-5IFF4
22.2
GTEX-11NV4-1926-SM-5N9D4
22.0
GTEX-ZE7O-2926-SM-51MSG
21.5
GTEX-ZP4G-1926-SM-57WDZ
21.0
GTEX-13OVL-2926-SM-5IFG3
20.1
GTEX-12WSN-2226-SM-5DUXT
19.8
GTEX-ZT9W-2126-SM-51MSF
18.5
GTEX-13VXT-1726-SM-5IFF5
17.4
GTEX-Y5LM-1826-SM-4VDT9
15.7
GTEX-ZPU1-2326-SM-57WEP
11.0
GTEX-11ZTS-3026-SM-5EQM7
8.7
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.