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TISSUE ATLAS PRIMARY DATA SALIVARY GLAND

GENE/PROTEIN

Antibody validation


Dictionary

Salivary gland

Tissue proteome

Salivary gland

SALIVARY GLAND - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:28.8TPM
GTEx:42.6RPKM
FANTOM5:91.5Tags Per Million

SALIVARY GLAND - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB000459

 

Glandular cells

Medium  
 
 
 

SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

28.8

overview Female, age 68
Sample 1
TPM: 30.7
Cell types%
Glandular cells: 45
Ductal cells: 25
Adipocytes: 5
Other cell types: 25
overview Male, age 60
Sample 2
TPM: 28.5
Cell types%
Glandular cells: 55
Ductal cells: 20
Adipocytes: 5
Endothelial cells: 5
Other cell types: 15
overview Female, age 21
Sample 3
TPM: 27.3
Cell types%
Glandular cells: 55
Ductal cells: 15
Adipocytes: 5
Endothelial cells: 5
Other cell types: 20

SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

42.6

GTEx sample id

RPKM

 

Minor Salivary Gland

Minor Salivary Gland
RPKM: 42.6
Samples: 57

Max RPKM: 104.4
Min RPKM: 8.7
Std RPKM: 21.5
Median RPKM: 39.7
GTEX-11WQK-2926-SM-5EQKT 104.4
GTEX-XMK1-2626-SM-4B65R 103.7
GTEX-ZA64-1726-SM-5CVMF 96.5
GTEX-13111-2326-SM-5LZUQ 88.4
GTEX-1314G-2026-SM-5LZUM 82.0
GTEX-ZQG8-2126-SM-4YCF1 66.9
GTEX-13OVI-2326-SM-5KM47 66.5
GTEX-1339X-2326-SM-5HL5B 62.1
GTEX-13NYC-2626-SM-5K7VN 60.7
GTEX-ZXG5-2826-SM-5NQ8T 60.3
GTEX-146FR-1226-SM-5SIA7 56.9
GTEX-11P82-0926-SM-5986X 56.6
GTEX-13O21-1926-SM-5MR39 53.1
GTEX-11TUW-2426-SM-5EQKB 53.0
GTEX-1117F-3026-SM-5GZYU 52.0
GTEX-YF7O-2226-SM-5CVN8 50.0
GTEX-Y3I4-1926-SM-4TT8L 49.8
GTEX-11ZTT-2226-SM-5CVLP 49.3
GTEX-11P81-2026-SM-5P9GT 49.2
GTEX-13113-1526-SM-5EGHV 47.1
GTEX-X15G-2126-SM-4PQZR 44.8
GTEX-WYVS-2026-SM-4RGNS 44.2
GTEX-145ME-1626-SM-5RQI3 44.1
GTEX-ZC5H-2726-SM-5KLZW 43.7
GTEX-X5EB-1726-SM-4E3J7 41.9
GTEX-13JVG-2926-SM-5J2N9 41.8
GTEX-WOFM-2126-SM-4OOSR 41.3
GTEX-111FC-2926-SM-5GZY7 40.8
GTEX-XGQ4-2626-SM-4AT6B 39.7
GTEX-X261-2426-SM-4PQZU 37.8
GTEX-X3Y1-1926-SM-4PQZO 37.3
GTEX-Y5V6-2226-SM-4VDTC 36.6
GTEX-1445S-2926-SM-5O993 36.4
GTEX-131XF-2826-SM-5EGKH 35.5
GTEX-13QJC-2326-SM-5Q5CD 34.4
GTEX-11EQ9-2026-SM-5P9JI 32.4
GTEX-WFJO-2026-SM-4LVM3 31.7
GTEX-12WSL-2126-SM-5GCNG 31.7
GTEX-YB5K-1726-SM-5IFIZ 31.3
GTEX-ZQUD-2126-SM-51MSY 30.9
GTEX-Y111-2626-SM-4TT24 30.8
GTEX-13G51-2426-SM-5LZY8 29.9
GTEX-13CF2-2426-SM-5LZYL 27.7
GTEX-14B4R-1426-SM-5Q5CG 26.8
GTEX-XV7Q-2426-SM-4BRV8 25.7
GTEX-12WSM-1826-SM-5BC64 22.8
GTEX-13NYB-2426-SM-5IFF4 22.2
GTEX-11NV4-1926-SM-5N9D4 22.0
GTEX-ZE7O-2926-SM-51MSG 21.5
GTEX-ZP4G-1926-SM-57WDZ 21.0
GTEX-13OVL-2926-SM-5IFG3 20.1
GTEX-12WSN-2226-SM-5DUXT 19.8
GTEX-ZT9W-2126-SM-51MSF 18.5
GTEX-13VXT-1726-SM-5IFF5 17.4
GTEX-Y5LM-1826-SM-4VDT9 15.7
GTEX-ZPU1-2326-SM-57WEP 11.0
GTEX-11ZTS-3026-SM-5EQM7 8.7
Show all

SALIVARY GLAND - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

91.5

FANTOM5 sample id

Sample description

Tags Per Million

Salivary gland
Tags Per Million: 91.5
FF:10093-102C3 16-60 years, mixed 91.5

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