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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 102.8
Min RPKM: 8.4
Std RPKM: 18.1
Median RPKM: 20.8
GTEX-WFG8-1626-SM-4LVMB
102.8
GTEX-Y5LM-1626-SM-4VDTB
80.2
GTEX-111CU-1326-SM-5NQ8L
77.4
GTEX-ZQUD-0926-SM-57WE3
72.8
GTEX-131XG-1726-SM-5LZUR
67.8
GTEX-XXEK-1026-SM-4BRUW
64.9
GTEX-XMK1-1826-SM-4B66F
64.1
GTEX-117YX-0326-SM-5GICL
62.3
GTEX-1192X-2526-SM-59868
61.2
GTEX-13111-1426-SM-5DUW3
56.4
GTEX-ZF2S-1726-SM-57WFT
47.5
GTEX-WFG7-1726-SM-4LVME
45.0
GTEX-13O21-1026-SM-5IJDU
43.9
GTEX-13OVI-1926-SM-5IJCG
42.4
GTEX-ZQG8-2526-SM-57WEQ
41.5
GTEX-ZTPG-2626-SM-57WFX
40.3
GTEX-Y3IK-1726-SM-4YCCR
36.5
GTEX-13QBU-1926-SM-5IJEW
36.5
GTEX-WEY5-1526-SM-4LMJF
35.8
GTEX-Y114-1426-SM-4TT6W
34.0
GTEX-12WSK-1526-SM-5CVNO
33.7
GTEX-ZPIC-2326-SM-57WDW
33.5
GTEX-UPK5-2026-SM-4JBIM
33.2
GTEX-13FTW-2026-SM-5IJE2
32.2
GTEX-13RTK-0826-SM-5Q5C6
31.0
GTEX-X15G-1426-SM-4PQZK
30.8
GTEX-148VJ-2226-SM-5NQ9M
30.1
GTEX-ZVT2-2126-SM-5NQ93
27.5
GTEX-Z9EW-0926-SM-5CVMM
27.3
GTEX-XBED-1426-SM-4AT4G
26.9
GTEX-13O61-1326-SM-5KM31
26.8
GTEX-XAJ8-0526-SM-47JYK
26.2
GTEX-1399U-2126-SM-5IFEZ
26.1
GTEX-ZP4G-1626-SM-57WGD
25.9
GTEX-139T6-1026-SM-5IJGC
25.2
GTEX-145ME-0926-SM-5O9AR
24.8
GTEX-ZVP2-1726-SM-5GU5P
24.3
GTEX-ZZ64-0526-SM-5GZXM
24.0
GTEX-VJYA-0926-SM-4KL1N
23.7
GTEX-145LT-1026-SM-5LU9O
23.1
GTEX-WRHK-1026-SM-4MVOD
23.1
GTEX-ZTX8-0526-SM-59HLD
22.9
GTEX-ZLFU-1526-SM-4WWBT
20.9
GTEX-139YR-2226-SM-5IFFW
20.8
GTEX-ZC5H-2326-SM-4WAYT
20.8
GTEX-12BJ1-1926-SM-5HL9Z
20.7
GTEX-11P82-0826-SM-5P9GU
20.5
GTEX-11XUK-1426-SM-5EQMG
20.5
GTEX-13113-1226-SM-5EGHT
20.4
GTEX-11NSD-1726-SM-5N9C3
19.9
GTEX-ZA64-1226-SM-5HL7B
19.9
GTEX-VUSG-1726-SM-4KKZL
19.9
GTEX-13FH7-1226-SM-5IJFK
19.7
GTEX-ZYWO-1526-SM-5SIAL
19.6
GTEX-XGQ4-1326-SM-4GIDU
19.5
GTEX-11P7K-1626-SM-5GU63
19.1
GTEX-14DAR-1426-SM-5RQIR
18.7
GTEX-YB5E-1526-SM-5IFIE
18.7
GTEX-WFJO-0926-SM-4LVM2
17.9
GTEX-ZXES-1526-SM-5NQ95
17.7
GTEX-ZLV1-1126-SM-4WWBW
17.6
GTEX-XUZC-1426-SM-4BRV3
17.4
GTEX-ZVZP-1826-SM-5GZXB
17.3
GTEX-14E6E-1626-SM-5RQI7
17.2
GTEX-13PL7-2626-SM-5IFH4
17.1
GTEX-ZTSS-0926-SM-59865
17.0
GTEX-133LE-1426-SM-5IFH1
16.3
GTEX-131XF-1326-SM-5GCMQ
16.1
GTEX-WH7G-1626-SM-4LVMY
16.0
GTEX-11EQ9-1326-SM-5985X
15.9
GTEX-11VI4-1626-SM-5EQKO
15.3
GTEX-ZYFG-2026-SM-5E43Y
15.3
GTEX-1399S-2026-SM-5KM4B
14.9
GTEX-11DXX-1626-SM-5H11H
14.1
GTEX-11I78-1126-SM-5A5K5
13.9
GTEX-13D11-0726-SM-5LZZB
13.7
GTEX-YEC4-1726-SM-4W21E
13.2
GTEX-13CF3-1226-SM-5LZXN
12.4
GTEX-Y9LG-1626-SM-5IFHM
12.3
GTEX-11DXZ-1326-SM-5H11X
12.2
GTEX-ZEX8-1826-SM-57WBH
11.9
GTEX-WQUQ-2426-SM-4MVNW
11.6
GTEX-1122O-1326-SM-5H11F
11.4
GTEX-ZPCL-1726-SM-57WEO
11.2
GTEX-YF7O-1826-SM-5IFIU
11.0
GTEX-1399R-2026-SM-5K7WN
10.2
GTEX-111YS-1426-SM-5GID8
8.8
GTEX-X5EB-1626-SM-4E3IV
8.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.