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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:30.2TPM
GTEx:15.0RPKM
FANTOM5:46.4Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:High
Leydig cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA036991

 

Antibody HPA036992

 

Cells in seminiferous ducts

High   High  

Leydig cells

Medium   High  
   
   
   

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

30.2

overview Male, age 56
Sample 1
TPM: 36.9
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 2
TPM: 31.3
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62
Sample 3
TPM: 30.8
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34
Sample 4
TPM: 25.5
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26
Sample 5
TPM: 22.1
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50
Sample 6
TPM: 24.0
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37
Sample 7
TPM: 23.3
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51
Sample 8
TPM: 41.1
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 9
TPM: 34.3
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26
Sample 10
TPM: 32.8
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

15.0

GTEx sample id

RPKM

 

Testis

Testis
RPKM: 15.0
Samples: 172

Max RPKM: 26.1
Min RPKM: 8.3
Std RPKM: 3.3
Median RPKM: 14.6
GTEX-Y8E4-2226-SM-5LU94 26.1
GTEX-11WQK-2826-SM-5EQKH 25.2
GTEX-Y9LG-1726-SM-4VBQE 23.7
GTEX-147F4-0626-SM-5LUAK 22.4
GTEX-14A6H-2326-SM-5Q5B5 22.4
GTEX-WFON-2026-SM-4LVMW 21.9
GTEX-ZAB4-0126-SM-5CVMG 21.7
GTEX-O5YT-2126-SM-3MJGD 21.6
GTEX-YEC4-1526-SM-4W1YU 21.2
GTEX-S33H-0126-SM-4AD62 21.1
GTEX-QV44-1726-SM-4R1KG 20.9
GTEX-YF7O-2026-SM-4W1YE 20.7
GTEX-YB5E-1926-SM-5IFIG 20.3
GTEX-11O72-0726-SM-5P9GO 20.2
GTEX-13FTW-1326-SM-5LZZD 20.1
GTEX-OIZI-0126-SM-3NB13 19.5
GTEX-1339X-1926-SM-5PNVP 19.3
GTEX-QLQ7-1426-SM-4R1JX 19.3
GTEX-147JS-0126-SM-5S2TW 19.2
GTEX-13OW6-0126-SM-5IJGM 19.1
GTEX-1212Z-0326-SM-5FQSJ 18.9
GTEX-SNMC-1026-SM-4DM7K 18.9
GTEX-X261-2326-SM-4PQYU 18.7
GTEX-R55C-1426-SM-48FED 18.6
GTEX-XPT6-1626-SM-4B655 18.6
GTEX-QMRM-1526-SM-4R1K6 18.5
GTEX-YJ89-0626-SM-4TT3Z 18.5
GTEX-11TT1-2226-SM-5GU6B 18.4
GTEX-U3ZH-1526-SM-4DXV1 18.4
GTEX-YFCO-1726-SM-4W21S 18.3
GTEX-S7SE-0326-SM-4AT5Q 18.1
GTEX-WHSB-2126-SM-4M1XF 18.1
GTEX-SUCS-1326-SM-4DM5T 18.0
GTEX-ZDTT-2026-SM-5K7TY 17.8
GTEX-ZUA1-2726-SM-59HLJ 17.8
GTEX-13O61-2026-SM-5J2M6 17.6
GTEX-144GN-1626-SM-5Q5BU 17.6
GTEX-11EI6-2226-SM-5EGJM 17.5
GTEX-RM2N-1326-SM-48FCW 17.4
GTEX-11ONC-2226-SM-5HL6D 17.3
GTEX-RN64-2326-SM-48FDW 17.2
GTEX-13O21-1226-SM-5J2MK 17.1
GTEX-QLQW-1026-SM-447A9 17.1
GTEX-1399Q-2826-SM-5IJEZ 17.0
GTEX-14753-0626-SM-5Q5CY 17.0
GTEX-111CU-1726-SM-5EGHM 16.8
GTEX-1399R-1626-SM-5P9GG 16.8
GTEX-13N2G-0126-SM-5N9DV 16.8
GTEX-11OF3-1826-SM-5987N 16.7
GTEX-XPVG-2226-SM-4B65U 16.7
GTEX-117XS-2026-SM-5GID1 16.6
GTEX-11P7K-1026-SM-5HL6Y 16.6
GTEX-T5JC-0726-SM-4DM55 16.6
GTEX-ZT9X-1426-SM-5DUX1 16.6
GTEX-13OVH-0726-SM-5N9BU 16.5
GTEX-TKQ1-0926-SM-4DXU2 16.5
GTEX-WVLH-2626-SM-4MVNV 16.5
GTEX-PLZ5-1526-SM-3P5ZX 16.4
GTEX-VJYA-1426-SM-4KL1Y 16.4
GTEX-ZV7C-2026-SM-5NQ8F 16.4
GTEX-ZZ64-1126-SM-5GZXY 16.4
GTEX-OXRL-2126-SM-3NM98 16.3
GTEX-Y5V6-1726-SM-4VDSZ 16.3
GTEX-NFK9-0126-SM-3LK5H 16.2
GTEX-145LT-0426-SM-5LUAP 16.0
GTEX-U8XE-0126-SM-4E3I3 16.0
GTEX-ZTX8-1126-SM-51MRM 16.0
GTEX-WFG8-1926-SM-4LVM1 15.8
GTEX-ZA64-1626-SM-5CVME 15.6
GTEX-11P82-1526-SM-5BC5M 15.5
GTEX-XBED-2026-SM-4AT5D 15.4
GTEX-ZPU1-2126-SM-57WED 15.3
GTEX-OIZH-2126-SM-3NB1P 15.1
GTEX-P4QS-2126-SM-3NMCF 15.1
GTEX-XMK1-2026-SM-4B65K 15.1
GTEX-13O1R-0726-SM-5IJEI 15.0
GTEX-QV31-1126-SM-4R1K4 15.0
GTEX-WOFM-1126-SM-4OOSB 15.0
GTEX-ZDYS-1326-SM-5IJFF 15.0
GTEX-139TT-2226-SM-5LZWO 14.9
GTEX-Q2AH-1526-SM-48TZG 14.9
GTEX-R55E-0726-SM-48FCZ 14.8
GTEX-U3ZM-1626-SM-4DXSK 14.8
GTEX-144GM-0426-SM-5Q5C8 14.7
GTEX-ZQUD-2026-SM-51MSM 14.7
GTEX-145MH-2326-SM-5O9AW 14.6
GTEX-WZTO-0326-SM-4PQYZ 14.6
GTEX-R55D-0126-SM-48FEL 14.5
GTEX-TKQ2-1526-SM-4DXUN 14.5
GTEX-ZT9W-2226-SM-57WFU 14.5
GTEX-132QS-1226-SM-5P9GD 14.4
GTEX-13NYB-2226-SM-5MR58 14.4
GTEX-OOBJ-2126-SM-3NB1N 14.4
GTEX-S4Q7-1226-SM-4AD5I 14.4
GTEX-V1D1-2126-SM-4JBH4 14.4
GTEX-RWSA-2426-SM-47JXR 14.3
GTEX-12C56-1426-SM-5FQSW 14.2
GTEX-12WSM-1326-SM-5GCP9 14.2
GTEX-OHPM-2126-SM-3LK75 14.1
GTEX-PW2O-1426-SM-48TCD 14.1
GTEX-S3XE-1526-SM-4AD5A 14.1
GTEX-T8EM-0126-SM-4DM5R 14.1
GTEX-ZTSS-1526-SM-51MTC 14.1
GTEX-12696-0226-SM-5EGL3 14.0
GTEX-WH7G-1926-SM-4LVMM 14.0
GTEX-12ZZY-0126-SM-5LZV2 13.8
GTEX-P4QR-0226-SM-3NMCH 13.8
GTEX-139T6-1226-SM-5IFFC 13.7
GTEX-U8T8-1126-SM-4DXUE 13.7
GTEX-11EQ9-1926-SM-5PNVV 13.6
GTEX-11NSD-1026-SM-5N9BE 13.6
GTEX-13N1W-2626-SM-5IJEP 13.6
GTEX-111YS-2026-SM-5EGGL 13.5
GTEX-13OW5-2526-SM-5L3I1 13.5
GTEX-UPJH-0126-SM-4IHLL 13.3
GTEX-XBEC-0126-SM-4GIDT 13.3
GTEX-ZYFC-0126-SM-5GIEH 13.3
GTEX-111FC-1926-SM-5GZYC 13.2
GTEX-Q2AI-1226-SM-48U14 13.2
GTEX-QEG5-0126-SM-4R1JR 13.2
GTEX-RUSQ-2126-SM-47JXK 13.2
GTEX-S95S-1126-SM-4B64E 13.2
GTEX-XAJ8-1326-SM-47JYT 13.2
GTEX-13OVL-0426-SM-5IFG6 13.1
GTEX-U4B1-1526-SM-4DXSL 13.1
GTEX-XGQ4-2026-SM-4AT6G 13.1
GTEX-X3Y1-2626-SM-4PQZI 13.0
GTEX-11GS4-2026-SM-5N9CP 12.9
GTEX-13NZB-2026-SM-5MR4M 12.8
GTEX-139TS-1726-SM-5IJG5 12.6
GTEX-144GL-0726-SM-5LU4P 12.6
GTEX-ZVTK-0126-SM-57WDG 12.5
GTEX-13112-0226-SM-5P9IV 12.3
GTEX-13NZA-2526-SM-5IJFX 12.2
GTEX-T6MN-2026-SM-4DM7L 12.2
GTEX-Z93S-1726-SM-5HL8G 12.2
GTEX-11TUW-2226-SM-5EQL9 12.1
GTEX-ZYT6-2726-SM-5GICP 12.1
GTEX-YEC3-1726-SM-5IFIK 11.9
GTEX-11LCK-2326-SM-5HL53 11.7
GTEX-13111-1526-SM-5EGJX 11.6
GTEX-XQ3S-2726-SM-4BOP2 11.5
GTEX-111VG-1926-SM-5GIDO 11.4
GTEX-117YW-1526-SM-5EGGP 11.4
GTEX-131XE-0426-SM-5IJF4 11.3
GTEX-145MO-0126-SM-5S2QU 11.3
GTEX-XLM4-1526-SM-4AT6D 11.3
GTEX-11NUK-2626-SM-5A5MB 11.2
GTEX-13VXU-0726-SM-5J2O7 11.2
GTEX-SNOS-1126-SM-4DM67 11.2
GTEX-X5EB-2026-SM-4E3KA 11.2
GTEX-ZVZP-2226-SM-57WBF 11.2
GTEX-12WSL-2326-SM-5DUXQ 11.0
GTEX-V955-1926-SM-4KL1L 11.0
GTEX-ZAB5-2426-SM-5CVMW 11.0
GTEX-11DXZ-2126-SM-59881 10.9
GTEX-11NV4-1726-SM-5N9FC 10.8
GTEX-N7MS-0126-SM-3TW8O 10.7
GTEX-Y111-2426-SM-4TT23 10.6
GTEX-13FHP-2826-SM-5IJFW 10.5
GTEX-OOBK-2126-SM-3LK5T 10.5
GTEX-12WSI-2126-SM-5GCMV 10.3
GTEX-QEG4-0126-SM-48TZE 10.3
GTEX-REY6-0126-SM-48FDT 10.2
GTEX-11EQ8-1426-SM-5EGJR 9.8
GTEX-14ABY-0626-SM-5Q5C9 9.7
GTEX-S7PM-0626-SM-4AD4Q 9.6
GTEX-WK11-0326-SM-4OOS6 9.6
GTEX-11ZUS-2726-SM-5FQUA 9.5
GTEX-12WSH-0326-SM-5GCNH 9.5
GTEX-11WQC-2326-SM-5EQKE 9.2
GTEX-13FLW-2126-SM-5N9FD 8.3
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

46.4

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 46.4
FF:10096-102C6 14-64 years, male 51.4
FF:10026-101D8 34,53,86 years, male 41.5

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