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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 31.3
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 30.8
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 25.5
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 22.1
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 24.0
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 23.3
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 41.1
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 34.3
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 32.8
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 26.1
Min RPKM: 8.3
Std RPKM: 3.3
Median RPKM: 14.6
GTEX-Y8E4-2226-SM-5LU94
26.1
GTEX-11WQK-2826-SM-5EQKH
25.2
GTEX-Y9LG-1726-SM-4VBQE
23.7
GTEX-147F4-0626-SM-5LUAK
22.4
GTEX-14A6H-2326-SM-5Q5B5
22.4
GTEX-WFON-2026-SM-4LVMW
21.9
GTEX-ZAB4-0126-SM-5CVMG
21.7
GTEX-O5YT-2126-SM-3MJGD
21.6
GTEX-YEC4-1526-SM-4W1YU
21.2
GTEX-S33H-0126-SM-4AD62
21.1
GTEX-QV44-1726-SM-4R1KG
20.9
GTEX-YF7O-2026-SM-4W1YE
20.7
GTEX-YB5E-1926-SM-5IFIG
20.3
GTEX-11O72-0726-SM-5P9GO
20.2
GTEX-13FTW-1326-SM-5LZZD
20.1
GTEX-OIZI-0126-SM-3NB13
19.5
GTEX-1339X-1926-SM-5PNVP
19.3
GTEX-QLQ7-1426-SM-4R1JX
19.3
GTEX-147JS-0126-SM-5S2TW
19.2
GTEX-13OW6-0126-SM-5IJGM
19.1
GTEX-1212Z-0326-SM-5FQSJ
18.9
GTEX-SNMC-1026-SM-4DM7K
18.9
GTEX-X261-2326-SM-4PQYU
18.7
GTEX-R55C-1426-SM-48FED
18.6
GTEX-XPT6-1626-SM-4B655
18.6
GTEX-QMRM-1526-SM-4R1K6
18.5
GTEX-YJ89-0626-SM-4TT3Z
18.5
GTEX-11TT1-2226-SM-5GU6B
18.4
GTEX-U3ZH-1526-SM-4DXV1
18.4
GTEX-YFCO-1726-SM-4W21S
18.3
GTEX-S7SE-0326-SM-4AT5Q
18.1
GTEX-WHSB-2126-SM-4M1XF
18.1
GTEX-SUCS-1326-SM-4DM5T
18.0
GTEX-ZDTT-2026-SM-5K7TY
17.8
GTEX-ZUA1-2726-SM-59HLJ
17.8
GTEX-13O61-2026-SM-5J2M6
17.6
GTEX-144GN-1626-SM-5Q5BU
17.6
GTEX-11EI6-2226-SM-5EGJM
17.5
GTEX-RM2N-1326-SM-48FCW
17.4
GTEX-11ONC-2226-SM-5HL6D
17.3
GTEX-RN64-2326-SM-48FDW
17.2
GTEX-13O21-1226-SM-5J2MK
17.1
GTEX-QLQW-1026-SM-447A9
17.1
GTEX-1399Q-2826-SM-5IJEZ
17.0
GTEX-14753-0626-SM-5Q5CY
17.0
GTEX-111CU-1726-SM-5EGHM
16.8
GTEX-1399R-1626-SM-5P9GG
16.8
GTEX-13N2G-0126-SM-5N9DV
16.8
GTEX-11OF3-1826-SM-5987N
16.7
GTEX-XPVG-2226-SM-4B65U
16.7
GTEX-117XS-2026-SM-5GID1
16.6
GTEX-11P7K-1026-SM-5HL6Y
16.6
GTEX-T5JC-0726-SM-4DM55
16.6
GTEX-ZT9X-1426-SM-5DUX1
16.6
GTEX-13OVH-0726-SM-5N9BU
16.5
GTEX-TKQ1-0926-SM-4DXU2
16.5
GTEX-WVLH-2626-SM-4MVNV
16.5
GTEX-PLZ5-1526-SM-3P5ZX
16.4
GTEX-VJYA-1426-SM-4KL1Y
16.4
GTEX-ZV7C-2026-SM-5NQ8F
16.4
GTEX-ZZ64-1126-SM-5GZXY
16.4
GTEX-OXRL-2126-SM-3NM98
16.3
GTEX-Y5V6-1726-SM-4VDSZ
16.3
GTEX-NFK9-0126-SM-3LK5H
16.2
GTEX-145LT-0426-SM-5LUAP
16.0
GTEX-U8XE-0126-SM-4E3I3
16.0
GTEX-ZTX8-1126-SM-51MRM
16.0
GTEX-WFG8-1926-SM-4LVM1
15.8
GTEX-ZA64-1626-SM-5CVME
15.6
GTEX-11P82-1526-SM-5BC5M
15.5
GTEX-XBED-2026-SM-4AT5D
15.4
GTEX-ZPU1-2126-SM-57WED
15.3
GTEX-OIZH-2126-SM-3NB1P
15.1
GTEX-P4QS-2126-SM-3NMCF
15.1
GTEX-XMK1-2026-SM-4B65K
15.1
GTEX-13O1R-0726-SM-5IJEI
15.0
GTEX-QV31-1126-SM-4R1K4
15.0
GTEX-WOFM-1126-SM-4OOSB
15.0
GTEX-ZDYS-1326-SM-5IJFF
15.0
GTEX-139TT-2226-SM-5LZWO
14.9
GTEX-Q2AH-1526-SM-48TZG
14.9
GTEX-R55E-0726-SM-48FCZ
14.8
GTEX-U3ZM-1626-SM-4DXSK
14.8
GTEX-144GM-0426-SM-5Q5C8
14.7
GTEX-ZQUD-2026-SM-51MSM
14.7
GTEX-145MH-2326-SM-5O9AW
14.6
GTEX-WZTO-0326-SM-4PQYZ
14.6
GTEX-R55D-0126-SM-48FEL
14.5
GTEX-TKQ2-1526-SM-4DXUN
14.5
GTEX-ZT9W-2226-SM-57WFU
14.5
GTEX-132QS-1226-SM-5P9GD
14.4
GTEX-13NYB-2226-SM-5MR58
14.4
GTEX-OOBJ-2126-SM-3NB1N
14.4
GTEX-S4Q7-1226-SM-4AD5I
14.4
GTEX-V1D1-2126-SM-4JBH4
14.4
GTEX-RWSA-2426-SM-47JXR
14.3
GTEX-12C56-1426-SM-5FQSW
14.2
GTEX-12WSM-1326-SM-5GCP9
14.2
GTEX-OHPM-2126-SM-3LK75
14.1
GTEX-PW2O-1426-SM-48TCD
14.1
GTEX-S3XE-1526-SM-4AD5A
14.1
GTEX-T8EM-0126-SM-4DM5R
14.1
GTEX-ZTSS-1526-SM-51MTC
14.1
GTEX-12696-0226-SM-5EGL3
14.0
GTEX-WH7G-1926-SM-4LVMM
14.0
GTEX-12ZZY-0126-SM-5LZV2
13.8
GTEX-P4QR-0226-SM-3NMCH
13.8
GTEX-139T6-1226-SM-5IFFC
13.7
GTEX-U8T8-1126-SM-4DXUE
13.7
GTEX-11EQ9-1926-SM-5PNVV
13.6
GTEX-11NSD-1026-SM-5N9BE
13.6
GTEX-13N1W-2626-SM-5IJEP
13.6
GTEX-111YS-2026-SM-5EGGL
13.5
GTEX-13OW5-2526-SM-5L3I1
13.5
GTEX-UPJH-0126-SM-4IHLL
13.3
GTEX-XBEC-0126-SM-4GIDT
13.3
GTEX-ZYFC-0126-SM-5GIEH
13.3
GTEX-111FC-1926-SM-5GZYC
13.2
GTEX-Q2AI-1226-SM-48U14
13.2
GTEX-QEG5-0126-SM-4R1JR
13.2
GTEX-RUSQ-2126-SM-47JXK
13.2
GTEX-S95S-1126-SM-4B64E
13.2
GTEX-XAJ8-1326-SM-47JYT
13.2
GTEX-13OVL-0426-SM-5IFG6
13.1
GTEX-U4B1-1526-SM-4DXSL
13.1
GTEX-XGQ4-2026-SM-4AT6G
13.1
GTEX-X3Y1-2626-SM-4PQZI
13.0
GTEX-11GS4-2026-SM-5N9CP
12.9
GTEX-13NZB-2026-SM-5MR4M
12.8
GTEX-139TS-1726-SM-5IJG5
12.6
GTEX-144GL-0726-SM-5LU4P
12.6
GTEX-ZVTK-0126-SM-57WDG
12.5
GTEX-13112-0226-SM-5P9IV
12.3
GTEX-13NZA-2526-SM-5IJFX
12.2
GTEX-T6MN-2026-SM-4DM7L
12.2
GTEX-Z93S-1726-SM-5HL8G
12.2
GTEX-11TUW-2226-SM-5EQL9
12.1
GTEX-ZYT6-2726-SM-5GICP
12.1
GTEX-YEC3-1726-SM-5IFIK
11.9
GTEX-11LCK-2326-SM-5HL53
11.7
GTEX-13111-1526-SM-5EGJX
11.6
GTEX-XQ3S-2726-SM-4BOP2
11.5
GTEX-111VG-1926-SM-5GIDO
11.4
GTEX-117YW-1526-SM-5EGGP
11.4
GTEX-131XE-0426-SM-5IJF4
11.3
GTEX-145MO-0126-SM-5S2QU
11.3
GTEX-XLM4-1526-SM-4AT6D
11.3
GTEX-11NUK-2626-SM-5A5MB
11.2
GTEX-13VXU-0726-SM-5J2O7
11.2
GTEX-SNOS-1126-SM-4DM67
11.2
GTEX-X5EB-2026-SM-4E3KA
11.2
GTEX-ZVZP-2226-SM-57WBF
11.2
GTEX-12WSL-2326-SM-5DUXQ
11.0
GTEX-V955-1926-SM-4KL1L
11.0
GTEX-ZAB5-2426-SM-5CVMW
11.0
GTEX-11DXZ-2126-SM-59881
10.9
GTEX-11NV4-1726-SM-5N9FC
10.8
GTEX-N7MS-0126-SM-3TW8O
10.7
GTEX-Y111-2426-SM-4TT23
10.6
GTEX-13FHP-2826-SM-5IJFW
10.5
GTEX-OOBK-2126-SM-3LK5T
10.5
GTEX-12WSI-2126-SM-5GCMV
10.3
GTEX-QEG4-0126-SM-48TZE
10.3
GTEX-REY6-0126-SM-48FDT
10.2
GTEX-11EQ8-1426-SM-5EGJR
9.8
GTEX-14ABY-0626-SM-5Q5C9
9.7
GTEX-S7PM-0626-SM-4AD4Q
9.6
GTEX-WK11-0326-SM-4OOS6
9.6
GTEX-11ZUS-2726-SM-5FQUA
9.5
GTEX-12WSH-0326-SM-5GCNH
9.5
GTEX-11WQC-2326-SM-5EQKE
9.2
GTEX-13FLW-2126-SM-5N9FD
8.3
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.