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TISSUE ATLAS PRIMARY DATA PANCREAS

GENE/PROTEIN

Antibody validation


Dictionary

Pancreas

Tissue proteome

Pancreas

PANCREAS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:2.0TPM
GTEx:10.5RPKM
FANTOM5:17.8Tags Per Million

PANCREAS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Exocrine glandular cells:Medium
Islets of Langerhans:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA020637

 

Antibody HPA020728

 

Antibody HPA020734

 

Exocrine glandular cells

Low   Medium   High  

Islets of Langerhans

Low   Not detected   Not detected  
     
     
     

PANCREAS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

2.0

overview Female, age 59
Sample 1
TPM: 2.1
Cell types%
Exocrine glandular cells: 75
Islets of Langerhans: 10
Ductal cells: 5
Other cell types: 10
overview Male, age 60
Sample 2
TPM: 1.9
Cell types%
Exocrine glandular cells: 90
Islets of Langerhans: 5
Ductal cells: 5

PANCREAS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

10.5

GTEx sample id

RPKM

 

Pancreas

Pancreas
RPKM: 10.5
Samples: 171

Max RPKM: 73.2
Min RPKM: 1.2
Std RPKM: 10.2
Median RPKM: 8.1
GTEX-ZYW4-2126-SM-59HJ9 73.2
GTEX-13YAN-2126-SM-5Q5C4 65.8
GTEX-13X6H-0626-SM-5LU53 62.6
GTEX-Y8LW-1026-SM-5IFJY 36.3
GTEX-X5EB-0526-SM-46MVP 35.5
GTEX-12BJ1-1126-SM-5EGGG 32.9
GTEX-PSDG-1526-SM-48TCY 31.5
GTEX-12WSK-0226-SM-5BC62 30.5
GTEX-145MN-1426-SM-5SI9H 30.5
GTEX-QCQG-0426-SM-48U29 30.3
GTEX-WFJO-0626-SM-4LVMC 30.3
GTEX-ZV7C-0726-SM-59HKH 27.6
GTEX-145MO-2126-SM-5Q5CZ 26.5
GTEX-11P7K-0526-SM-5BC5I 22.4
GTEX-P4PQ-1026-SM-3NMCN 21.9
GTEX-YB5K-1826-SM-5IFJC 21.8
GTEX-XPVG-0326-SM-4B653 20.2
GTEX-RM2N-0326-SM-48FD8 17.1
GTEX-ZLFU-0726-SM-57WF6 17.0
GTEX-OHPL-1026-SM-3MJGI 16.9
GTEX-11LCK-0226-SM-5A5M6 16.8
GTEX-12WSN-0826-SM-5GCOF 15.9
GTEX-13OVI-0526-SM-5IFFQ 15.3
GTEX-Y114-0826-SM-4TT77 15.2
GTEX-145ME-0326-SM-5S2QO 15.0
GTEX-T5JW-0226-SM-4DM7I 15.0
GTEX-SUCS-1426-SM-4DM5W 14.8
GTEX-13FH7-1426-SM-5IFIC 14.2
GTEX-V955-0326-SM-4JBGV 14.2
GTEX-11XUK-0626-SM-5N9ES 14.1
GTEX-S32W-0826-SM-4AD5Z 13.6
GTEX-132QS-0926-SM-5P9GB 13.5
GTEX-146FR-0126-SM-5Q5F3 13.5
GTEX-14E6E-1426-SM-5RQI2 13.5
GTEX-X3Y1-0726-SM-3P5YU 13.4
GTEX-14ICL-1126-SM-5S2RE 13.1
GTEX-117YX-0226-SM-5EGH6 12.7
GTEX-131XF-1426-SM-5BC68 12.5
GTEX-ZLWG-0326-SM-4WWC7 12.2
GTEX-13VXT-1226-SM-5LU3M 12.0
GTEX-Y3I4-0826-SM-4TT2A 12.0
GTEX-ZP4G-0426-SM-4YCER 11.8
GTEX-13PL7-2226-SM-5L3IC 11.6
GTEX-PLZ6-0726-SM-3P619 11.5
GTEX-R55D-1426-SM-48FEN 11.5
GTEX-ZPIC-0926-SM-4WWFK 11.5
GTEX-XGQ4-0226-SM-4GIDS 11.3
GTEX-1211K-1126-SM-5EGGB 11.1
GTEX-1399S-0326-SM-5IFFS 11.1
GTEX-QLQ7-0626-SM-4R1JT 11.1
GTEX-OOBK-1026-SM-48TC2 10.9
GTEX-XBEW-1626-SM-4SOJP 10.9
GTEX-Q2AH-0926-SM-48TZK 10.8
GTEX-WH7G-0826-SM-4LVMR 10.8
GTEX-S95S-0726-SM-4B64H 10.5
GTEX-ZVT2-2026-SM-5NQ8Q 10.5
GTEX-1399U-0926-SM-5IFHA 10.3
GTEX-13W3W-1026-SM-5IFG4 10.3
GTEX-SIU7-0926-SM-4BRX1 10.2
GTEX-X4LF-0326-SM-4QAS9 10.2
GTEX-QDVN-0926-SM-2I5GL 10.1
GTEX-SNOS-0926-SM-4DM7A 10.1
GTEX-ZG7Y-0326-SM-4WWEY 10.1
GTEX-RWS6-1126-SM-47JXC 9.9
GTEX-SE5C-0326-SM-4BRWX 9.9
GTEX-WFG7-0426-SM-4LMK5 9.9
GTEX-111CU-0526-SM-5EGHK 9.7
GTEX-YEC4-1326-SM-5IFHG 9.7
GTEX-S4P3-0626-SM-4AD59 9.6
GTEX-TMMY-1326-SM-4DXU9 9.6
GTEX-UJMC-1126-SM-3GADP 9.6
GTEX-1128S-0826-SM-5GZZI 9.5
GTEX-ZVZP-0626-SM-59HL5 9.5
GTEX-T8EM-0826-SM-4DM76 9.2
GTEX-13FTW-0526-SM-5IFIP 8.8
GTEX-O5YT-1026-SM-3MJGF 8.8
GTEX-ZZPU-0726-SM-5N9C8 8.8
GTEX-13CF3-1026-SM-5LZWY 8.7
GTEX-QMRM-0326-SM-4R1K5 8.7
GTEX-YEC3-0626-SM-5IFHZ 8.6
GTEX-ZVP2-0726-SM-59HKY 8.5
GTEX-NFK9-1626-SM-3LK5J 8.3
GTEX-U4B1-0726-SM-4DXUA 8.3
GTEX-Y5LM-0526-SM-4V6G3 8.2
GTEX-12WSL-0426-SM-5GCNX 8.1
GTEX-ZF3C-2026-SM-4WWB5 8.1
GTEX-W5WG-0826-SM-4RGNE 8.0
GTEX-ZYFG-0826-SM-5BC5T 8.0
GTEX-P4QS-1026-SM-3NMCW 7.9
GTEX-WI4N-1826-SM-4OOSF 7.9
GTEX-UPIC-0726-SM-3GADW 7.8
GTEX-ZYWO-1326-SM-5SI8X 7.8
GTEX-13O1R-1826-SM-5KM3B 7.7
GTEX-Y9LG-0726-SM-4VDS3 7.7
GTEX-WHWD-0726-SM-4OORX 7.4
GTEX-XBED-0226-SM-47JY8 7.4
GTEX-QDVJ-1226-SM-48U1V 7.2
GTEX-WRHK-0226-SM-4MVOH 7.2
GTEX-1122O-0726-SM-5GIEV 7.1
GTEX-13D11-2226-SM-5IFEO 7.1
GTEX-13O61-2126-SM-5IJEO 7.1
GTEX-11VI4-0426-SM-5EGHZ 6.8
GTEX-R55G-0326-SM-48FDM 6.7
GTEX-UJHI-0626-SM-3DB8T 6.7
GTEX-WFG8-0326-SM-4LVN4 6.5
GTEX-139YR-1526-SM-5IFJ1 6.4
GTEX-13N11-0226-SM-5KM3C 6.4
GTEX-WFON-0626-SM-4LVLX 6.3
GTEX-Y3IK-0426-SM-4WWE2 6.3
GTEX-QV31-0226-SM-447BO 6.2
GTEX-144GN-0826-SM-5LU5G 6.1
GTEX-YB5E-0526-SM-4VDSD 6.1
GTEX-11DXX-0926-SM-5H112 6.0
GTEX-131XE-1926-SM-5IFER 6.0
GTEX-XQ8I-1926-SM-4BOOK 5.9
GTEX-PWOO-0626-SM-48TZH 5.8
GTEX-OHPM-1026-SM-3LK74 5.6
GTEX-QLQW-0326-SM-447A8 5.6
GTEX-11EQ9-1026-SM-5H134 5.5
GTEX-111YS-1226-SM-5EGGJ 5.4
GTEX-Q2AI-0426-SM-48U13 5.4
GTEX-XUW1-1726-SM-4BOOZ 5.4
GTEX-1497J-0426-SM-5Q5CO 5.3
GTEX-NPJ8-2126-SM-3MJGK 5.2
GTEX-ZC5H-0826-SM-5N9FH 5.1
GTEX-QEL4-1326-SM-447AD 5.0
GTEX-P4PP-1026-SM-3NM9O 4.9
GTEX-VJYA-0826-SM-4KL1M 4.9
GTEX-XYKS-1226-SM-4BRVI 4.9
GTEX-ZAB4-1726-SM-5HL8C 4.8
GTEX-ZT9W-0926-SM-57WFS 4.8
GTEX-13FTX-1226-SM-5IFGN 4.7
GTEX-V1D1-0726-SM-4JBH7 4.7
GTEX-X15G-0726-SM-4PQZ5 4.7
GTEX-11TT1-0326-SM-5LUAY 4.6
GTEX-ZAB5-0826-SM-5P9FU 4.6
GTEX-WYVS-0926-SM-4SOJV 4.5
GTEX-XMK1-0326-SM-4B652 4.5
GTEX-S3XE-0526-SM-4AD4G 4.4
GTEX-131XG-1426-SM-5GCMO 4.2
GTEX-XXEK-1726-SM-4BRVB 4.0
GTEX-ZYY3-0826-SM-5E44R 3.7
GTEX-YFCO-1026-SM-5LU9S 3.6
GTEX-1339X-1026-SM-5IFH5 3.5
GTEX-14AS3-0326-SM-5Q5DB 3.3
GTEX-PW2O-0826-SM-48TC5 3.3
GTEX-QV44-0426-SM-4R1KF 3.3
GTEX-YF7O-1326-SM-4W1ZR 3.3
GTEX-11NSD-0526-SM-5A5LT 3.2
GTEX-ZTPG-1026-SM-5DUWP 3.2
GTEX-11I78-0626-SM-5A5LZ 3.0
GTEX-OOBJ-1026-SM-3NB2L 3.0
GTEX-1399R-0426-SM-5IJE3 2.9
GTEX-144FL-1526-SM-5Q5CA 2.9
GTEX-PX3G-1026-SM-48TZW 2.9
GTEX-S33H-1226-SM-4AD69 2.8
GTEX-146FQ-1526-SM-5Q5CX 2.7
GTEX-TKQ2-0426-SM-4DXUO 2.7
GTEX-WQUQ-2126-SM-4OOSO 2.7
GTEX-XV7Q-0926-SM-4BRVQ 2.5
GTEX-11ONC-0526-SM-5BC57 2.3
GTEX-R53T-0426-SM-48FEM 2.2
GTEX-13U4I-1526-SM-5IFFF 2.1
GTEX-TML8-0526-SM-32QOQ 2.1
GTEX-Y5V5-1026-SM-5LUAH 2.1
GTEX-Y8E4-1326-SM-5IFIY 2.1
GTEX-132AR-1826-SM-5EGHR 2.0
GTEX-ZPU1-0226-SM-4WWC9 1.7
GTEX-Q734-0426-SM-48TZX 1.6
GTEX-12WSG-1026-SM-5EGII 1.4
GTEX-13FLV-0626-SM-5IFEY 1.2
Show all

PANCREAS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

17.8

FANTOM5 sample id

Sample description

Tags Per Million

Pancreas
Tags Per Million: 17.8
FF:10049-101G4 52 years, male 17.8

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