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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 173.5
Min RPKM: 19.1
Std RPKM: 20.2
Median RPKM: 34.3
GTEX-13CF2-2426-SM-5LZYL
173.5
GTEX-13NYC-2626-SM-5K7VN
60.8
GTEX-ZQG8-2126-SM-4YCF1
54.4
GTEX-Y3I4-1926-SM-4TT8L
51.2
GTEX-XV7Q-2426-SM-4BRV8
50.9
GTEX-131XF-2826-SM-5EGKH
50.9
GTEX-Y5V6-2226-SM-4VDTC
50.5
GTEX-ZE7O-2926-SM-51MSG
48.3
GTEX-ZC5H-2726-SM-5KLZW
48.2
GTEX-X15G-2126-SM-4PQZR
45.3
GTEX-X5EB-1726-SM-4E3J7
44.0
GTEX-13O21-1926-SM-5MR39
42.1
GTEX-13JVG-2926-SM-5J2N9
42.1
GTEX-WOFM-2126-SM-4OOSR
42.0
GTEX-146FR-1226-SM-5SIA7
40.3
GTEX-WFJO-2026-SM-4LVM3
40.1
GTEX-ZA64-1726-SM-5CVMF
39.7
GTEX-13113-1526-SM-5EGHV
39.6
GTEX-13111-2326-SM-5LZUQ
39.6
GTEX-YF7O-2226-SM-5CVN8
39.0
GTEX-11ZTT-2226-SM-5CVLP
38.3
GTEX-XMK1-2626-SM-4B65R
37.9
GTEX-ZP4G-1926-SM-57WDZ
37.6
GTEX-Y5LM-1826-SM-4VDT9
36.8
GTEX-Y111-2626-SM-4TT24
35.6
GTEX-1314G-2026-SM-5LZUM
35.5
GTEX-XGQ4-2626-SM-4AT6B
35.3
GTEX-ZPU1-2326-SM-57WEP
34.7
GTEX-1339X-2326-SM-5HL5B
34.3
GTEX-X261-2426-SM-4PQZU
33.0
GTEX-WYVS-2026-SM-4RGNS
33.0
GTEX-13G51-2426-SM-5LZY8
32.7
GTEX-111FC-2926-SM-5GZY7
32.5
GTEX-ZXG5-2826-SM-5NQ8T
32.5
GTEX-1117F-3026-SM-5GZYU
32.3
GTEX-ZT9W-2126-SM-51MSF
32.3
GTEX-12WSL-2126-SM-5GCNG
31.8
GTEX-11EQ9-2026-SM-5P9JI
30.7
GTEX-145ME-1626-SM-5RQI3
30.6
GTEX-1445S-2926-SM-5O993
30.4
GTEX-13NYB-2426-SM-5IFF4
29.9
GTEX-11P81-2026-SM-5P9GT
29.6
GTEX-11ZTS-3026-SM-5EQM7
29.0
GTEX-11P82-0926-SM-5986X
29.0
GTEX-X3Y1-1926-SM-4PQZO
28.9
GTEX-13OVI-2326-SM-5KM47
28.9
GTEX-13QJC-2326-SM-5Q5CD
28.5
GTEX-YB5K-1726-SM-5IFIZ
28.2
GTEX-14B4R-1426-SM-5Q5CG
28.1
GTEX-12WSN-2226-SM-5DUXT
25.7
GTEX-12WSM-1826-SM-5BC64
25.6
GTEX-11NV4-1926-SM-5N9D4
23.3
GTEX-11TUW-2426-SM-5EQKB
22.9
GTEX-ZQUD-2126-SM-51MSY
22.5
GTEX-11WQK-2926-SM-5EQKT
21.6
GTEX-13VXT-1726-SM-5IFF5
20.2
GTEX-13OVL-2926-SM-5IFG3
19.1
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.