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TISSUE ATLAS PRIMARY DATA SALIVARY GLAND

GENE/PROTEIN

Antibody validation


Dictionary

Salivary gland

Tissue proteome

Salivary gland

SALIVARY GLAND - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:48.0TPM
GTEx:37.9RPKM
FANTOM5:167.0Tags Per Million

SALIVARY GLAND - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA027296

 

Antibody HPA054276

 

Antibody CAB047333

 

Glandular cells

Low   High   Low  
     
     
     

SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

48.0

overview Female, age 68
Sample 1
TPM: 64.5
Cell types%
Glandular cells: 45
Ductal cells: 25
Adipocytes: 5
Other cell types: 25
overview Male, age 60
Sample 2
TPM: 38.3
Cell types%
Glandular cells: 55
Ductal cells: 20
Adipocytes: 5
Endothelial cells: 5
Other cell types: 15
overview Female, age 21
Sample 3
TPM: 41.4
Cell types%
Glandular cells: 55
Ductal cells: 15
Adipocytes: 5
Endothelial cells: 5
Other cell types: 20

SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

37.9

GTEx sample id

RPKM

 

Minor Salivary Gland

Minor Salivary Gland
RPKM: 37.9
Samples: 57

Max RPKM: 173.5
Min RPKM: 19.1
Std RPKM: 20.2
Median RPKM: 34.3
GTEX-13CF2-2426-SM-5LZYL 173.5
GTEX-13NYC-2626-SM-5K7VN 60.8
GTEX-ZQG8-2126-SM-4YCF1 54.4
GTEX-Y3I4-1926-SM-4TT8L 51.2
GTEX-XV7Q-2426-SM-4BRV8 50.9
GTEX-131XF-2826-SM-5EGKH 50.9
GTEX-Y5V6-2226-SM-4VDTC 50.5
GTEX-ZE7O-2926-SM-51MSG 48.3
GTEX-ZC5H-2726-SM-5KLZW 48.2
GTEX-X15G-2126-SM-4PQZR 45.3
GTEX-X5EB-1726-SM-4E3J7 44.0
GTEX-13O21-1926-SM-5MR39 42.1
GTEX-13JVG-2926-SM-5J2N9 42.1
GTEX-WOFM-2126-SM-4OOSR 42.0
GTEX-146FR-1226-SM-5SIA7 40.3
GTEX-WFJO-2026-SM-4LVM3 40.1
GTEX-ZA64-1726-SM-5CVMF 39.7
GTEX-13113-1526-SM-5EGHV 39.6
GTEX-13111-2326-SM-5LZUQ 39.6
GTEX-YF7O-2226-SM-5CVN8 39.0
GTEX-11ZTT-2226-SM-5CVLP 38.3
GTEX-XMK1-2626-SM-4B65R 37.9
GTEX-ZP4G-1926-SM-57WDZ 37.6
GTEX-Y5LM-1826-SM-4VDT9 36.8
GTEX-Y111-2626-SM-4TT24 35.6
GTEX-1314G-2026-SM-5LZUM 35.5
GTEX-XGQ4-2626-SM-4AT6B 35.3
GTEX-ZPU1-2326-SM-57WEP 34.7
GTEX-1339X-2326-SM-5HL5B 34.3
GTEX-X261-2426-SM-4PQZU 33.0
GTEX-WYVS-2026-SM-4RGNS 33.0
GTEX-13G51-2426-SM-5LZY8 32.7
GTEX-111FC-2926-SM-5GZY7 32.5
GTEX-ZXG5-2826-SM-5NQ8T 32.5
GTEX-1117F-3026-SM-5GZYU 32.3
GTEX-ZT9W-2126-SM-51MSF 32.3
GTEX-12WSL-2126-SM-5GCNG 31.8
GTEX-11EQ9-2026-SM-5P9JI 30.7
GTEX-145ME-1626-SM-5RQI3 30.6
GTEX-1445S-2926-SM-5O993 30.4
GTEX-13NYB-2426-SM-5IFF4 29.9
GTEX-11P81-2026-SM-5P9GT 29.6
GTEX-11ZTS-3026-SM-5EQM7 29.0
GTEX-11P82-0926-SM-5986X 29.0
GTEX-X3Y1-1926-SM-4PQZO 28.9
GTEX-13OVI-2326-SM-5KM47 28.9
GTEX-13QJC-2326-SM-5Q5CD 28.5
GTEX-YB5K-1726-SM-5IFIZ 28.2
GTEX-14B4R-1426-SM-5Q5CG 28.1
GTEX-12WSN-2226-SM-5DUXT 25.7
GTEX-12WSM-1826-SM-5BC64 25.6
GTEX-11NV4-1926-SM-5N9D4 23.3
GTEX-11TUW-2426-SM-5EQKB 22.9
GTEX-ZQUD-2126-SM-51MSY 22.5
GTEX-11WQK-2926-SM-5EQKT 21.6
GTEX-13VXT-1726-SM-5IFF5 20.2
GTEX-13OVL-2926-SM-5IFG3 19.1
Show all

SALIVARY GLAND - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

167.0

FANTOM5 sample id

Sample description

Tags Per Million

Salivary gland
Tags Per Million: 167.0
FF:10093-102C3 16-60 years, mixed 167.0

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