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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 503.5
Min RPKM: 0
Std RPKM: 144
Median RPKM: 120
GTEX-111YS-1426-SM-5GID8
503.5
GTEX-ZVZP-1826-SM-5GZXB
474.5
GTEX-Y9LG-1626-SM-5IFHM
473.3
GTEX-ZPCL-1726-SM-57WEO
443.1
GTEX-14DAR-1426-SM-5RQIR
410.3
GTEX-YEC4-1726-SM-4W21E
399.8
GTEX-1122O-1326-SM-5H11F
381.1
GTEX-11DXX-1626-SM-5H11H
377.6
GTEX-145LT-1026-SM-5LU9O
376.2
GTEX-ZLV1-1126-SM-4WWBW
373.5
GTEX-YB5E-1526-SM-5IFIE
372.2
GTEX-13D11-0726-SM-5LZZB
370.2
GTEX-11I78-1126-SM-5A5K5
367.3
GTEX-11EQ9-1326-SM-5985X
357.0
GTEX-13113-1226-SM-5EGHT
347.0
GTEX-ZYFG-2026-SM-5E43Y
340.8
GTEX-ZZ64-0526-SM-5GZXM
333.7
GTEX-13PL7-2626-SM-5IFH4
332.8
GTEX-YF7O-1826-SM-5IFIU
323.4
GTEX-ZTX8-0526-SM-59HLD
307.7
GTEX-1399S-2026-SM-5KM4B
305.5
GTEX-ZTSS-0926-SM-59865
289.4
GTEX-11P7K-1626-SM-5GU63
289.1
GTEX-ZXES-1526-SM-5NQ95
286.8
GTEX-XBED-1426-SM-4AT4G
261.9
GTEX-ZA64-1226-SM-5HL7B
242.0
GTEX-131XF-1326-SM-5GCMQ
240.8
GTEX-13FTW-2026-SM-5IJE2
240.3
GTEX-X5EB-1626-SM-4E3IV
231.2
GTEX-14E6E-1626-SM-5RQI7
227.4
GTEX-XUZC-1426-SM-4BRV3
219.5
GTEX-ZVT2-2126-SM-5NQ93
207.5
GTEX-Y114-1426-SM-4TT6W
184.3
GTEX-ZVP2-1726-SM-5GU5P
180.5
GTEX-XXEK-1026-SM-4BRUW
175.6
GTEX-13CF3-1226-SM-5LZXN
165.1
GTEX-12BJ1-1926-SM-5HL9Z
147.8
GTEX-13FH7-1226-SM-5IJFK
147.1
GTEX-ZLFU-1526-SM-4WWBT
135.5
GTEX-ZTPG-2626-SM-57WFX
131.1
GTEX-133LE-1426-SM-5IFH1
125.5
GTEX-ZPIC-2326-SM-57WDW
125.4
GTEX-139T6-1026-SM-5IJGC
122.7
GTEX-WFJO-0926-SM-4LVM2
122.6
GTEX-XAJ8-0526-SM-47JYK
117.5
GTEX-WFG7-1726-SM-4LVME
115.1
GTEX-XGQ4-1326-SM-4GIDU
113.1
GTEX-11XUK-1426-SM-5EQMG
112.4
GTEX-13O61-1326-SM-5KM31
111.5
GTEX-11P82-0826-SM-5P9GU
104.8
GTEX-ZYWO-1526-SM-5SIAL
101.8
GTEX-VJYA-0926-SM-4KL1N
100.2
GTEX-WQUQ-2426-SM-4MVNW
97.1
GTEX-11DXZ-1326-SM-5H11X
85.4
GTEX-1399U-2126-SM-5IFEZ
79.4
GTEX-WH7G-1626-SM-4LVMY
77.9
GTEX-13RTK-0826-SM-5Q5C6
73.8
GTEX-ZEX8-1826-SM-57WBH
73.4
GTEX-139YR-2226-SM-5IFFW
72.8
GTEX-Z9EW-0926-SM-5CVMM
63.0
GTEX-13O21-1026-SM-5IJDU
53.2
GTEX-11VI4-1626-SM-5EQKO
48.4
GTEX-1399R-2026-SM-5K7WN
48.3
GTEX-Y3IK-1726-SM-4YCCR
47.8
GTEX-11NSD-1726-SM-5N9C3
47.1
GTEX-WRHK-1026-SM-4MVOD
28.1
GTEX-12WSK-1526-SM-5CVNO
24.4
GTEX-145ME-0926-SM-5O9AR
23.4
GTEX-111CU-1326-SM-5NQ8L
21.5
GTEX-ZQUD-0926-SM-57WE3
20.9
GTEX-13OVI-1926-SM-5IJCG
20.8
GTEX-ZP4G-1626-SM-57WGD
18.4
GTEX-X15G-1426-SM-4PQZK
18.3
GTEX-WFG8-1626-SM-4LVMB
17.8
GTEX-13QBU-1926-SM-5IJEW
10.1
GTEX-Y5LM-1626-SM-4VDTB
9.2
GTEX-ZF2S-1726-SM-57WFT
7.7
GTEX-131XG-1726-SM-5LZUR
6.0
GTEX-117YX-0326-SM-5GICL
4.2
GTEX-ZQG8-2526-SM-57WEQ
3.5
GTEX-VUSG-1726-SM-4KKZL
3.2
GTEX-148VJ-2226-SM-5NQ9M
1.8
GTEX-WEY5-1526-SM-4LMJF
1.4
GTEX-XMK1-1826-SM-4B66F
1.2
GTEX-13111-1426-SM-5DUW3
0.5
GTEX-UPK5-2026-SM-4JBIM
0.3
GTEX-1192X-2526-SM-59868
0.0
GTEX-ZC5H-2326-SM-4WAYT
0.0
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SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.