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TISSUE ATLAS PRIMARY DATA CEREBELLUM

GENE/PROTEIN

Antibody validation


Dictionary

Cerebellum

CEREBELLUM - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:9.3RPKM
FANTOM5:192.9Tags Per Million

CEREBELLUM - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in granular layer:Medium
Cells in molecular layer:High
Purkinje cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA040705

 

Cells in granular layer

Medium  

Cells in molecular layer

High  

Purkinje cells

High  
 
 
 

CEREBELLUM - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


CEREBELLUM - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

9.3

GTEx sample id

RPKM

 

Brain - Cerebellar Hemisphere

Brain - Cerebellar Hemisphere
RPKM: 9.2
Samples: 105

Max RPKM: 22
Min RPKM: 4.6
Std RPKM: 2.9
Median RPKM: 8.4
GTEX-NL3H-0011-R11A-SM-2I3E6 22.0
GTEX-R55E-0011-R11A-SM-2TC6I 21.9
GTEX-P44H-0011-R11A-SM-2XCER 19.2
GTEX-RVPV-0011-R11A-SM-2TF6F 16.1
GTEX-UTHO-0011-R11A-SM-3GIJE 14.5
GTEX-QDT8-0011-R11A-SM-32PKD 14.1
GTEX-12ZZZ-0011-R11a-SM-5EGLC 13.1
GTEX-T6MN-0011-R11A-SM-32QOX 13.1
GTEX-QMR6-0011-R11A-SM-32PKK 13.0
GTEX-Y8DK-0011-R11A-SM-4SOK2 12.7
GTEX-11ZUS-0011-R11b-SM-5BC7B 12.5
GTEX-12WSC-0011-R11a-SM-5GU5J 12.4
GTEX-X585-0011-R11B-SM-46MUZ 12.4
GTEX-NPJ8-0011-R11A-SM-2YUMS 12.2
GTEX-WVLH-0011-R11A-SM-3MJFO 12.0
GTEX-13SLW-0011-R11a-SM-5SI8Q 11.5
GTEX-OHPN-0011-R11A-SM-2I5FM 11.5
GTEX-ZAB4-0011-R11a-SM-4SOKI 11.5
GTEX-X4XX-0011-R11A-SM-46MWQ 11.4
GTEX-12126-0011-R11a-SM-5BC6X 11.1
GTEX-12WSE-0011-R11b-SM-5P9JW 10.9
GTEX-14ABY-0011-R11a-SM-5SI7C 10.9
GTEX-131YS-0011-R11b-SM-5EGLM 10.5
GTEX-1399T-0011-R11a-SM-5J2O1 10.5
GTEX-145LU-0011-R11b-SM-5P9JX 10.5
GTEX-ZVZQ-0011-R11a-SM-51MS6 10.5
GTEX-12WSH-0011-R11a-SM-5LZVM 10.1
GTEX-XMD1-0011-R11A-SM-4AT5J 10.1
GTEX-YJ89-0011-R11a-SM-4SOKA 10.1
GTEX-13O3Q-0011-R11b-SM-5KM2W 10.0
GTEX-12WSI-0011-R11b-SM-5P9EZ 9.7
GTEX-132Q8-0011-R11b-SM-5DUW9 9.6
GTEX-ZVT3-0011-R11b-SM-57WBI 9.4
GTEX-T2IS-0011-R11A-SM-32QPC 9.3
GTEX-WL46-0011-R11A-SM-3MJFT 9.3
GTEX-WWYW-0011-R11A-SM-3NB38 9.3
GTEX-12WSF-0011-R11a-SM-5LZVT 9.2
GTEX-X4EP-0011-R11B-SM-4QASK 9.2
GTEX-ZDXO-0011-R11a-SM-4WWD9 9.2
GTEX-13FHO-0011-R11b-SM-5LZYQ 9.1
GTEX-13NZA-0011-R11b-SM-5KM4W 9.0
GTEX-13X6J-0011-R11a-SM-5P9HE 9.0
GTEX-14BIM-0011-R11b-SM-5S2RN 8.8
GTEX-ZUA1-0011-R11b-SM-51MTI 8.8
GTEX-13OVL-0011-R11b-SM-5L3G7 8.7
GTEX-14BIN-0011-R11a-SM-5SI79 8.6
GTEX-Q2AG-0011-R11A-SM-2HMKZ 8.6
GTEX-11GSP-0011-R11b-SM-5NQ7V 8.5
GTEX-13QIC-0011-R11b-SM-5O9BU 8.5
GTEX-13VXU-0011-R11b-SM-5O9DJ 8.5
GTEX-T5JC-0011-R11A-SM-32PMB 8.5
GTEX-131XH-0011-R11a-SM-5EGLN 8.4
GTEX-Z93S-0011-R11a-SM-4RGNN 8.4
GTEX-11OF3-0011-R11a-SM-57WCR 8.3
GTEX-11H98-0011-R11b-SM-5NQ6U 8.2
GTEX-13FHP-0011-R11b-SM-5LZXP 8.2
GTEX-13FTY-0011-R11a-SM-5IJEA 8.2
GTEX-13OW7-0011-R11a-SM-5O9DY 8.2
GTEX-13S7M-0011-R11b-SM-5P9HU 8.2
GTEX-13FXS-0011-R11a-SM-5L3DM 8.1
GTEX-13OW6-0011-R11a-SM-5L3H2 8.1
GTEX-13X6I-0011-R11a-SM-5P9HN 8.1
GTEX-S7SE-0011-R11A-SM-2XCDD 8.1
GTEX-ZE7O-0011-R11a-SM-57WBC 8.1
GTEX-144GL-0011-R11b-SM-5P9F6 8.0
GTEX-YFC4-0011-R11a-SM-4SOK6 8.0
GTEX-13CZV-0011-R11b-SM-5N9FN 7.9
GTEX-12WSM-0011-R11a-SM-5DUX8 7.8
GTEX-13JUV-0011-R11a-SM-5LZYH 7.8
GTEX-XOTO-0011-R11B-SM-4B64O 7.8
GTEX-13G51-0011-R11b-SM-5J2NE 7.6
GTEX-N7MS-0011-R11A-SM-2HMJS 7.6
GTEX-11WQC-0011-R11b-SM-57WD6 7.5
GTEX-WHSE-0011-R11A-SM-3P5YY 7.5
GTEX-12ZZX-0011-R11a-SM-5DUVJ 7.4
GTEX-13CF2-0011-R11b-SM-5LZXO 7.4
GTEX-13OVH-0011-R11b-SM-5KM4X 7.4
GTEX-NL4W-0011-R11A-SM-2I3DW 7.4
GTEX-RU72-0011-R11A-SM-5SI8G 7.4
GTEX-139TT-0011-R11b-SM-5LZV1 7.3
GTEX-13OW5-0011-R11b-SM-5L3GG 7.3
GTEX-13PLJ-0011-R11b-SM-5O9BS 7.3
GTEX-13X6K-0011-R11a-SM-5P9F5 7.3
GTEX-13OW8-0011-R11a-SM-5L3GT 7.2
GTEX-145MI-0011-R11a-SM-5P9JZ 7.2
GTEX-13NYB-0011-R11a-SM-5KM3Q 7.1
GTEX-13PVQ-0011-R11a-SM-5O9DU 7.1
GTEX-1313W-0011-R11a-SM-5DUXN 7.0
GTEX-13NYS-0011-R11b-SM-5MR4P 7.0
GTEX-12WSB-0011-R11b-SM-57WBJ 6.9
GTEX-13OVJ-0011-R11a-SM-5P9H8 6.8
GTEX-13O3O-0011-R11b-SM-5KM4G 6.7
GTEX-145MH-0011-R11a-SM-5P9HQ 6.7
GTEX-NPJ7-0011-R11A-SM-2I3E8 6.7
GTEX-13N2G-0011-R11a-SM-5MR3F 6.6
GTEX-ZF28-0011-R11a-SM-4WWEI 6.4
GTEX-13RTJ-0011-R11a-SM-5O9CK 6.3
GTEX-WZTO-0011-R11A-SM-4E3K9 6.3
GTEX-X261-0011-R11A-SM-4E3JY 6.3
GTEX-13SLX-0011-R11b-SM-5O9C8 6.1
GTEX-TSE9-0011-R11A-SM-3DB7N 5.9
GTEX-13JVG-0011-R11a-SM-5KM53 5.7
GTEX-13FLV-0011-R11a-SM-5LZZ7 5.3
GTEX-131XW-0011-R11a-SM-5DUV9 4.7
GTEX-139UW-0011-R11a-SM-5IJGN 4.6
Show all
 

Brain - Cerebellum

Brain - Cerebellum
RPKM: 9.5
Samples: 125

Max RPKM: 27.5
Min RPKM: 3.1
Std RPKM: 3.7
Median RPKM: 8.4
GTEX-QVJO-1325-SM-2S1QX 27.5
GTEX-ZZPT-2926-SM-5EQ5S 26.2
GTEX-R55E-2526-SM-2TC6H 24.0
GTEX-RU72-2926-SM-2TF66 22.1
GTEX-P44H-2426-SM-2XCEJ 21.6
GTEX-X4XX-2926-SM-3NMB1 16.0
GTEX-R55F-1226-SM-2TF59 15.4
GTEX-QMR6-1326-SM-32PLB 14.5
GTEX-NPJ7-2826-SM-2I3FU 14.3
GTEX-PVOW-2626-SM-32PL8 13.9
GTEX-Q2AG-2826-SM-2HMJQ 13.9
GTEX-QDT8-3026-SM-32PKB 13.1
GTEX-QVUS-2926-SM-3GIJB 12.9
GTEX-11NV4-2226-SM-5BC4T 12.3
GTEX-T2IS-2926-SM-32QPO 12.0
GTEX-12ZZX-2826-SM-5BC6K 11.7
GTEX-11DZ1-2926-SM-5A5KI 11.6
GTEX-WZTO-2826-SM-3NM8P 11.5
GTEX-132Q8-2926-SM-5IFFP 11.4
GTEX-14C5O-2926-SM-5RQI1 11.4
GTEX-11PRG-2826-SM-5BC54 11.3
GTEX-13X6I-2926-SM-5Q5C3 11.3
GTEX-ZAJG-3026-SM-5HL92 11.3
GTEX-13QIC-3026-SM-5LU58 11.1
GTEX-RNOR-2226-SM-2TF5O 11.1
GTEX-147F4-3026-SM-5Q5BJ 11.0
GTEX-PWO3-1026-SM-2I5F2 10.7
GTEX-12WSE-2926-SM-5RQJ9 10.6
GTEX-S7SE-2526-SM-2XCDL 10.6
GTEX-13VXU-3026-SM-5LU3K 10.3
GTEX-WL46-2826-SM-3LK81 10.3
GTEX-12WSC-2926-SM-5BC5Z 10.2
GTEX-1192X-3226-SM-5987D 10.1
GTEX-145MH-2926-SM-5Q5D2 10.1
GTEX-UTHO-2926-SM-3P5Z9 10.1
GTEX-117XS-3126-SM-5GIDP 10.0
GTEX-NPJ8-2626-SM-2D7W2 10.0
GTEX-T5JC-2326-SM-32PMR 10.0
GTEX-11DYG-2926-SM-5H132 9.8
GTEX-12WSH-3126-SM-5LZW8 9.8
GTEX-X4EP-3026-SM-3P5YP 9.7
GTEX-Y8DK-0726-SM-4TT3S 9.7
GTEX-ZAB4-2926-SM-57WCV 9.7
GTEX-14BIN-3326-SM-5Q5E6 9.6
GTEX-ZUA1-2926-SM-59HL3 9.6
GTEX-14ASI-2926-SM-5Q5DG 9.5
GTEX-13NYB-3226-SM-5J2ND 9.3
GTEX-13S7M-3026-SM-5S2QQ 9.3
GTEX-13OW6-2926-SM-5KM29 9.2
GTEX-Z93S-2826-SM-57WBL 9.2
GTEX-13FXS-3026-SM-5LZYO 9.1
GTEX-14BIM-3126-SM-5Q5C7 9.0
GTEX-WVLH-2926-SM-3MJG5 9.0
GTEX-WWYW-3026-SM-3NB36 9.0
GTEX-XLM4-2926-SM-4AT59 9.0
GTEX-11NUK-3026-SM-5986K 8.8
GTEX-14DAQ-3026-SM-5S2QZ 8.8
GTEX-12ZZZ-3126-SM-5LZU6 8.6
GTEX-13OW8-2926-SM-5L3FV 8.6
GTEX-145MG-3126-SM-5Q5D3 8.6
GTEX-TSE9-2926-SM-3DB77 8.6
GTEX-11GSO-3026-SM-5Q5AL 8.5
GTEX-11TTK-2826-SM-5GU5K 8.4
GTEX-12ZZY-2926-SM-5DUXO 8.4
GTEX-1399T-3126-SM-5IJFS 8.4
GTEX-145LU-2626-SM-5LU9Z 8.4
GTEX-ZAK1-2926-SM-5HL9S 8.4
GTEX-11DXY-3126-SM-5N9BT 8.3
GTEX-N7MT-1226-SM-2D7W4 8.3
GTEX-13CF2-3026-SM-5IFFX 8.2
GTEX-13JUV-3026-SM-5K7WX 8.2
GTEX-14E7W-2926-SM-5S2R8 8.2
GTEX-13O3Q-3026-SM-5IJGD 8.1
GTEX-N7MS-2526-SM-2D7W3 8.1
GTEX-XMD1-2826-SM-4AT5F 8.1
GTEX-13OVL-3026-SM-5IJF1 8.0
GTEX-YJ89-2926-SM-5P9IT 8.0
GTEX-111FC-3326-SM-5GZYV 7.9
GTEX-12WSB-3026-SM-59HKM 7.9
GTEX-139TT-2626-SM-5LZUB 7.9
GTEX-ZVT3-2926-SM-5GU6M 7.9
GTEX-1128S-2826-SM-5N9DI 7.8
GTEX-13112-2926-SM-5DUWT 7.8
GTEX-13O3O-3026-SM-5KM42 7.8
GTEX-ZYY3-3026-SM-5GIEJ 7.8
GTEX-12WSD-3026-SM-5LZU7 7.7
GTEX-13X6K-2826-SM-5O9DS 7.7
GTEX-145LS-3026-SM-5O99S 7.7
GTEX-12126-0926-SM-5FQTW 7.6
GTEX-1313W-3026-SM-5LZUZ 7.6
GTEX-Y111-2826-SM-4TT3O 7.6
GTEX-11O72-2826-SM-5HL6W 7.5
GTEX-11ZUS-2826-SM-5EQKW 7.5
GTEX-131YS-3026-SM-5EGHY 7.5
GTEX-13PVQ-2926-SM-5L3HJ 7.5
GTEX-14A5I-2826-SM-5SIBF 7.5
GTEX-11GSP-3126-SM-5A5LL 7.4
GTEX-13N2G-3126-SM-5IJGL 7.4
GTEX-11ONC-3026-SM-5985W 7.3
GTEX-139TS-3126-SM-5LZWX 7.3
GTEX-13FHP-2926-SM-5IJG9 7.3
GTEX-13G51-3126-SM-5IJG7 7.3
GTEX-11DXW-1026-SM-5H11K 7.2
GTEX-13OVH-2926-SM-5IJFH 7.2
GTEX-13FHO-2926-SM-5L3ES 7.1
GTEX-13OVJ-2726-SM-5IJG6 7.1
GTEX-144GL-2926-SM-5O99F 7.1
GTEX-XOTO-2926-SM-4B65G 7.1
GTEX-13JVG-3226-SM-5IJGJ 6.9
GTEX-WHSE-2926-SM-3NMBG 6.9
GTEX-X261-3126-SM-4PQZC 6.9
GTEX-YFC4-3026-SM-5IFJK 6.7
GTEX-T6MN-2526-SM-32PMN 6.6
GTEX-11EI6-2926-SM-5985U 6.5
GTEX-1269C-3126-SM-5EGI6 6.5
GTEX-11EMC-3326-SM-5P9JH 6.3
GTEX-131XH-2926-SM-5LZU4 6.3
GTEX-11ZVC-3026-SM-59HJM 6.2
GTEX-13OW7-2926-SM-5MR3Z 6.2
GTEX-ZYFD-2926-SM-5GID9 6.0
GTEX-12WSM-2126-SM-5GCOC 5.9
GTEX-13OW5-3126-SM-5MR3Y 5.9
GTEX-13RTJ-3126-SM-5S2Q4 5.8
GTEX-11ZTS-3226-SM-5EGID 5.3
GTEX-11OF3-3126-SM-5GU5E 3.1
Show all

CEREBELLUM - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

192.9

FANTOM5 sample id

Sample description

Tags Per Million

Cerebellum
Tags Per Million: 192.9
FF:10166-103B4 76 years, female 312.1
FF:10083-102B2 22-68 years, mixed 73.8

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