We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
AAGAB
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA PROSTATE

GENE/PROTEIN

Antibody validation


Dictionary

Prostate

Tissue proteome

Prostate

PROSTATE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:30.5TPM
GTEx:11.0RPKM
FANTOM5:31.0Tags Per Million

PROSTATE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA039371

 

Antibody HPA040174

 

Glandular cells

High   Medium  
   
   
   

PROSTATE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

30.5

overview Male, age 62
Sample 1
TPM: 18.1
Cell types%
Glandular cells: 30
Smooth muscle cells: 55
Skeletal muscle cells: 5
Other cell types: 10
N/A Male, age 65
Sample 2
TPM: 22.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 60
Other cell types: 20
overview Male, age 65
Sample 3
TPM: 25.4
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 68
Sample 4
TPM: 30.2
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 60
Sample 5
TPM: 27.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 55
Other cell types: 5
overview Male, age 66
Sample 6
TPM: 41.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 45
Other cell types: 5
overview Male, age 63
Sample 7
TPM: 33.8
Cell types%
Glandular cells: 60
Smooth muscle cells: 35
Other cell types: 5
overview Male, age 66
Sample 8
TPM: 40.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 30
Other cell types: 5
overview Male, age 58
Sample 9
TPM: 33.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 50
Other cell types: 5

PROSTATE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

11.0

GTEx sample id

RPKM

 

Prostate

Prostate
RPKM: 11.0
Samples: 106

Max RPKM: 18.2
Min RPKM: 5.3
Std RPKM: 2.6
Median RPKM: 11
GTEX-ZY6K-1526-SM-5GZXE 18.2
GTEX-X5EB-1826-SM-4E3K8 17.1
GTEX-11TUW-2126-SM-5GU7B 16.3
GTEX-ZT9W-1626-SM-4YCDQ 15.8
GTEX-11WQK-2726-SM-5EQMU 15.0
GTEX-132QS-1126-SM-5P9GC 15.0
GTEX-Q2AI-1126-SM-48U19 15.0
GTEX-WH7G-1726-SM-4LVKY 14.9
GTEX-QV31-1026-SM-4R1K3 14.5
GTEX-OIZH-2026-SM-3NB1M 14.4
GTEX-WFG7-1826-SM-3GIL1 14.4
GTEX-13FTW-1226-SM-5LZZ1 14.3
GTEX-U3ZM-0926-SM-4DXSW 14.2
GTEX-YF7O-1926-SM-4W1YQ 14.2
GTEX-YB5E-1826-SM-5IFI4 14.1
GTEX-S4Q7-1026-SM-4AD75 14.0
GTEX-SNOS-1026-SM-4DM4Y 14.0
GTEX-VJYA-1226-SM-3GIJ6 13.9
GTEX-XMK1-1026-SM-4B65H 13.9
GTEX-145LV-1226-SM-5S2QH 13.7
GTEX-ZUA1-2826-SM-59HLE 13.5
GTEX-11P82-1126-SM-5BC5K 13.4
GTEX-S95S-1026-SM-4B64M 13.3
GTEX-SNMC-0926-SM-4DM5U 13.1
GTEX-14E6E-1126-SM-5S2R4 13.0
GTEX-111CU-1526-SM-5N9FS 12.9
GTEX-139T6-1526-SM-5P9G6 12.8
GTEX-WFG8-1826-SM-4LVM4 12.8
GTEX-ZVP2-0826-SM-59HJ6 12.8
GTEX-V1D1-1926-SM-4JBGX 12.6
GTEX-ZTX8-1026-SM-5EGHD 12.6
GTEX-ZDYS-1226-SM-5IJF3 12.5
GTEX-12C56-1326-SM-5FQSV 12.4
GTEX-146FQ-1726-SM-5QGPX 12.4
GTEX-11TT1-2026-SM-5EQM8 12.3
GTEX-U8XE-2526-SM-4E3IT 12.3
GTEX-S33H-1826-SM-4AD65 12.1
GTEX-145LT-0626-SM-5O99E 11.8
GTEX-S3XE-1326-SM-4AD4H 11.8
GTEX-Y9LG-1826-SM-4VBQC 11.8
GTEX-13O61-1726-SM-5KM46 11.7
GTEX-WZTO-0926-SM-4PQZ3 11.7
GTEX-XQ3S-2526-SM-4BOOG 11.5
GTEX-ZPU1-2026-SM-57WFI 11.5
GTEX-117YX-1526-SM-5H12T 11.4
GTEX-QLQ7-1326-SM-4R1JY 11.4
GTEX-ZZ64-0926-SM-5E44L 11.4
GTEX-RM2N-1126-SM-48FCY 11.3
GTEX-12696-2226-SM-5EQ65 11.2
GTEX-SJXC-2026-SM-4DM6N 11.2
GTEX-V955-1826-SM-4JBIL 11.2
GTEX-OOBJ-2026-SM-3NB1R 11.1
GTEX-13FXS-2826-SM-5LZYC 11.0
GTEX-148VJ-1826-SM-5Q5DV 11.0
GTEX-XPVG-2026-SM-4B65E 11.0
GTEX-ZTTD-2726-SM-57WFA 11.0
GTEX-NFK9-2226-SM-3MJGP 10.9
GTEX-WOFM-0326-SM-4OOSL 10.9
GTEX-QMRM-1426-SM-4R1K8 10.7
GTEX-OOBK-2025-SM-3LK5S 10.6
GTEX-144GM-0826-SM-5O98R 10.5
GTEX-U4B1-1426-SM-4DXTX 10.3
GTEX-14ABY-0726-SM-5Q5DF 10.1
GTEX-XOTO-2826-SM-4B65I 10.1
GTEX-111FC-2026-SM-5GZYO 10.0
GTEX-Y8E4-2126-SM-5RQHO 10.0
GTEX-REY6-2126-SM-48FD9 9.9
GTEX-12BJ1-1226-SM-5LUAE 9.8
GTEX-11P7K-0626-SM-5985Z 9.6
GTEX-12ZZZ-2026-SM-5LZWJ 9.6
GTEX-14BMV-2326-SM-5RQJ4 9.6
GTEX-111YS-1726-SM-5GIED 9.5
GTEX-11O72-2726-SM-5HL6K 9.5
GTEX-11EQ9-1726-SM-5HL6U 9.4
GTEX-NPJ8-2426-SM-3MJHL 9.4
GTEX-PLZ6-1126-SM-3P5ZR 9.4
GTEX-11NSD-0826-SM-5986S 9.3
GTEX-RWSA-2026-SM-47JX8 9.3
GTEX-U412-2026-SM-4DXSI 9.1
GTEX-T8EM-1826-SM-4DM7F 8.9
GTEX-XGQ4-1826-SM-4AT6F 8.9
GTEX-YJ8A-1126-SM-5IFJU 8.8
GTEX-ZLFU-1726-SM-4WWBU 8.7
GTEX-132NY-2826-SM-5P9G2 8.5
GTEX-13FHO-2826-SM-5K7ZA 8.4
GTEX-13O21-1126-SM-5N9EV 8.3
GTEX-QEG4-2226-SM-4R1JM 8.3
GTEX-XAJ8-0626-SM-47JY4 8.3
GTEX-1399R-0526-SM-5IJEF 8.2
GTEX-1399T-1226-SM-5P9J5 8.1
GTEX-11ZUS-2126-SM-5N9E6 8.0
GTEX-13OW8-0426-SM-5J2NR 8.0
GTEX-WFON-1626-SM-4LVMV 7.9
GTEX-UTHO-2726-SM-4JBH9 7.8
GTEX-131XF-1926-SM-5DUW4 7.6
GTEX-QV44-1526-SM-4R1KI 7.6
GTEX-11DYG-2526-SM-5N9BB 7.5
GTEX-117YW-1426-SM-5EGGO 7.3
GTEX-13111-1326-SM-5GCNO 7.2
GTEX-11OF3-1726-SM-5GU5Q 7.0
GTEX-13N2G-1826-SM-5KM1I 7.0
GTEX-14C5O-2826-SM-5RQI6 6.4
GTEX-13NYS-1026-SM-5KLZT 6.1
GTEX-13G51-2326-SM-5LZXV 5.8
GTEX-WK11-2626-SM-4OOSK 5.8
GTEX-13RTJ-2126-SM-5S2PZ 5.3
Show all

PROSTATE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

31.0

FANTOM5 sample id

Sample description

Tags Per Million

Prostate
Tags Per Million: 31.0
FF:10022-101D4 73,79,93 years, male 31.0

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.