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TISSUE ATLAS PRIMARY DATA OVARY

GENE/PROTEIN

Antibody validation


Dictionary

Ovary

Tissue proteome

Ovary

OVARY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:223.0TPM
GTEx:39.0RPKM
FANTOM5:197.7Tags Per Million

OVARY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Ovarian stroma cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB013072

 

Ovarian stroma cells

High  
 
 
 

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

223.0

overview Female, age 64
Sample 1
TPM: 282.5
Cell types%
Stromal cells: 70
Smooth muscle cells: 15
Other cell types: 15
overview Female, age 52
Sample 2
TPM: 186.6
Cell types%
Stromal cells: 95
Other cell types: 5
overview Female, age 80
Sample 3
TPM: 199.8
Cell types%
Stromal cells: 70
Smooth muscle cells: 25
Other cell types: 5

OVARY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

39.0

GTEx sample id

RPKM

 

Ovary

Ovary
RPKM: 39.0
Samples: 97

Max RPKM: 74.3
Min RPKM: 11.7
Std RPKM: 15.4
Median RPKM: 39
GTEX-Q734-0726-SM-48TZP 74.3
GTEX-11GSP-0226-SM-5A5KV 73.4
GTEX-11ZTS-1926-SM-5CVLA 73.0
GTEX-P78B-1926-SM-3P616 70.1
GTEX-11EM3-1726-SM-5N9D1 68.1
GTEX-POMQ-1426-SM-3P61D 67.1
GTEX-TML8-0926-SM-4DXSJ 66.6
GTEX-133LE-1226-SM-5IFGC 66.4
GTEX-11P81-1526-SM-5P9GS 62.1
GTEX-W5WG-0926-SM-4RTX9 61.5
GTEX-13FTX-0926-SM-5IFF7 57.4
GTEX-Y3IK-2026-SM-4YCDG 57.1
GTEX-13N11-0526-SM-5IJFI 56.5
GTEX-ZPIC-1426-SM-4WWCP 55.4
GTEX-11VI4-1026-SM-5EQM1 55.2
GTEX-PWCY-1326-SM-48TCU 54.1
GTEX-P4PP-2426-SM-3P61L 54.1
GTEX-ZLWG-0926-SM-4WWC3 53.6
GTEX-ZZPU-2126-SM-5EGIU 53.5
GTEX-T2IS-2026-SM-4DM6W 52.8
GTEX-Y114-1726-SM-4TT7U 52.1
GTEX-13W3W-1526-SM-5LU5I 51.2
GTEX-11I78-1926-SM-59878 49.2
GTEX-XV7Q-1426-SM-4BRWA 48.9
GTEX-YJ8O-1026-SM-5CVM5 48.4
GTEX-13U4I-2126-SM-5LU55 48.1
GTEX-ZVT3-2626-SM-5GU5L 47.3
GTEX-ZYWO-1926-SM-5E456 47.2
GTEX-PX3G-2426-SM-48TZZ 46.9
GTEX-QCQG-1426-SM-48U22 46.2
GTEX-PWN1-2426-SM-48TDD 45.8
GTEX-12WSJ-1226-SM-5LU91 45.8
GTEX-U3ZN-1026-SM-4DXTC 45.5
GTEX-OHPK-2426-SM-3MJGH 44.8
GTEX-13OVI-0726-SM-5L3DD 44.1
GTEX-13X6H-1026-SM-5SIBE 43.7
GTEX-RU72-2226-SM-46MUE 42.6
GTEX-11ZVC-1426-SM-5EGGA 42.4
GTEX-11XUK-1626-SM-5GU5O 42.2
GTEX-S341-0726-SM-4AD5R 42.1
GTEX-S32W-1226-SM-4AD67 41.5
GTEX-YFC4-2726-SM-5IFJW 41.4
GTEX-ZVT2-0326-SM-5E44G 41.3
GTEX-UJHI-1226-SM-4IHLR 41.2
GTEX-132AR-1426-SM-5IFF1 41.2
GTEX-1313W-2726-SM-5P9IX 40.5
GTEX-XYKS-1726-SM-4E3IO 39.8
GTEX-ZP4G-0626-SM-4WWF1 39.7
GTEX-12WSD-2726-SM-59HLR 39.0
GTEX-139D8-2426-SM-5KM3A 38.9
GTEX-RU1J-0826-SM-46MUU 38.8
GTEX-11DXX-1426-SM-5GIDU 37.6
GTEX-ZYFG-1726-SM-5GZZB 37.3
GTEX-13PL7-2326-SM-5L3FY 36.5
GTEX-146FH-2526-SM-5Q5BP 35.8
GTEX-RWS6-1026-SM-47JXD 35.6
GTEX-X15G-1726-SM-4PQZN 35.5
GTEX-XUJ4-1326-SM-4BOQ9 34.9
GTEX-1269C-1826-SM-5N9E1 34.8
GTEX-13OVJ-2426-SM-5KM3I 33.6
GTEX-S4P3-0926-SM-4AD54 33.0
GTEX-XUW1-0126-SM-4BOOQ 32.2
GTEX-T5JW-0426-SM-4DM7M 31.7
GTEX-QVJO-3126-SM-4R1KC 30.6
GTEX-XMD3-2326-SM-4AT5H 30.6
GTEX-11EMC-1726-SM-5H11P 30.5
GTEX-11ZTT-1826-SM-5CVLN 30.3
GTEX-14AS3-1326-SM-5RQJE 29.5
GTEX-145ME-1226-SM-5SIB6 28.6
GTEX-ZYY3-2726-SM-5EGH4 28.3
GTEX-12ZZX-2026-SM-5LZV9 27.2
GTEX-13O3O-2726-SM-5KM35 27.1
GTEX-S7SF-1326-SM-4AD4P 26.8
GTEX-TMMY-1726-SM-4DXTD 26.6
GTEX-ZAJG-2726-SM-5S2MU 26.6
GTEX-13QIC-1526-SM-5IJFL 26.1
GTEX-13VXT-1526-SM-5LU3J 26.1
GTEX-TSE9-2226-SM-4DXUR 26.0
GTEX-12WSK-1926-SM-5LZVK 24.8
GTEX-P4QT-2426-SM-3NMCL 24.0
GTEX-13QBU-1526-SM-5LU3W 23.7
GTEX-ZC5H-2026-SM-5CVN2 23.6
GTEX-RTLS-2326-SM-46MUH 22.5
GTEX-131YS-2226-SM-5P9G8 22.0
GTEX-XUZC-1026-SM-4BOPY 21.7
GTEX-1399S-2126-SM-5J2MH 18.2
GTEX-12WSG-1426-SM-5FQUK 17.9
GTEX-13D11-1126-SM-5KLYS 16.5
GTEX-WWYW-2726-SM-4MVOP 16.3
GTEX-WI4N-2526-SM-4OOSE 15.9
GTEX-X8HC-2726-SM-46MUA 15.8
GTEX-12WSB-2226-SM-5GCOS 15.4
GTEX-13PVR-1226-SM-5RQJ2 14.5
GTEX-T6MO-1126-SM-4DM5D 14.4
GTEX-X4EO-2426-SM-4QASD 13.9
GTEX-OHPL-2426-SM-48TDN 13.3
GTEX-PLZ4-2826-SM-3P617 11.7
Show all

OVARY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

197.7

FANTOM5 sample id

Sample description

Tags Per Million

Ovary
Tags Per Million: 197.7
FF:10020-101D2 47,75,84 years, female 197.7

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