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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 974.0
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 4369.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 2071.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1565.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1715.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 3152.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 2666.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 4495.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 4881
Min RPKM: 0.1
Std RPKM: 551
Median RPKM: 247.3
GTEX-R53T-0326-SM-48FEC
4881.0
GTEX-X4EO-1126-SM-4QARQ
2477.3
GTEX-ZVT4-0626-SM-5E45T
1450.7
GTEX-1399R-1226-SM-5P9GF
1258.2
GTEX-U3ZN-0226-SM-3DB8D
1179.0
GTEX-13O3O-1826-SM-5IFGW
979.8
GTEX-ZYT6-0626-SM-5E45V
955.6
GTEX-YFC4-1526-SM-5IFJS
947.0
GTEX-YECK-1926-SM-4W21H
885.1
GTEX-ZVT3-1626-SM-5GU66
853.2
GTEX-131YS-1626-SM-5HL6C
848.0
GTEX-RN64-1826-SM-48FDV
827.6
GTEX-RWSA-1426-SM-47JXA
821.3
GTEX-RNOR-1426-SM-48FDJ
821.0
GTEX-12WSM-0726-SM-5GCOW
758.8
GTEX-12WSD-1426-SM-5GCN9
695.6
GTEX-RTLS-1326-SM-46MUN
692.1
GTEX-SJXC-1226-SM-4DM78
627.3
GTEX-13112-1426-SM-5EGH8
600.5
GTEX-ZF2S-3026-SM-4WWCH
597.9
GTEX-11ZVC-0726-SM-5FQT9
589.0
GTEX-147F4-1426-SM-5LUA8
573.1
GTEX-ZF29-2026-SM-4WWB7
561.5
GTEX-139TS-1426-SM-5IFJD
520.7
GTEX-14A5I-1726-SM-5QGQ5
504.7
GTEX-XBEC-1526-SM-4AT68
500.0
GTEX-PX3G-0826-SM-48TZS
488.8
GTEX-131XH-0626-SM-5LZWH
464.2
GTEX-QEG4-1826-SM-4R1JN
460.9
GTEX-14DAQ-1726-SM-5S2R2
456.3
GTEX-13PVR-0126-SM-5S2PY
437.4
GTEX-13VXU-0926-SM-5IFFH
412.4
GTEX-11NUK-1226-SM-5P9GM
397.4
GTEX-11DXZ-0126-SM-5EGGY
396.7
GTEX-11WQC-0726-SM-5EQMR
385.6
GTEX-REY6-1226-SM-48FDR
380.8
GTEX-13NYB-1026-SM-5IFH3
380.3
GTEX-QESD-2026-SM-447BI
363.3
GTEX-14AS3-0126-SM-5Q5F4
361.7
GTEX-OOBJ-0826-SM-3NB2K
345.6
GTEX-14E1K-0326-SM-5S2PE
344.1
GTEX-XOTO-0826-SM-4B65O
342.6
GTEX-11ZUS-2526-SM-59872
329.6
GTEX-11ZTS-1426-SM-5EQMM
327.7
GTEX-1212Z-0226-SM-59HLF
325.3
GTEX-WZTO-0626-SM-4PQYY
323.9
GTEX-13FTZ-0726-SM-5IFFY
318.3
GTEX-11DXY-0526-SM-5EGGQ
316.1
GTEX-13OW6-2626-SM-5IFF2
308.3
GTEX-P78B-1326-SM-3P611
288.4
GTEX-145LU-1326-SM-5LU9N
281.9
GTEX-1399T-0826-SM-5IFES
280.9
GTEX-145MF-0826-SM-5QGQA
275.8
GTEX-14753-1626-SM-5NQ9L
275.5
GTEX-11NV4-1326-SM-5HL6V
272.5
GTEX-13QJC-0726-SM-5RQJK
270.1
GTEX-13SLX-1226-SM-5S2Q6
260.9
GTEX-11GSP-0626-SM-5986T
259.3
GTEX-T6MN-1226-SM-3NMA5
254.9
GTEX-147JS-1126-SM-5RQIW
247.3
GTEX-ZAB5-0426-SM-5CVMI
240.8
GTEX-13FLV-0326-SM-5N9DJ
237.7
GTEX-Z9EW-0426-SM-5CVM9
233.7
GTEX-11EQ9-0526-SM-5A5JZ
220.2
GTEX-12WSI-0226-SM-5GCNA
214.8
GTEX-Q2AG-1126-SM-48U1P
198.9
GTEX-12ZZZ-1326-SM-59HKW
194.2
GTEX-X3Y1-2726-SM-4PQZH
190.0
GTEX-RM2N-1926-SM-48FCU
184.6
GTEX-Y5V5-0926-SM-4VBPZ
146.8
GTEX-RU72-1426-SM-46MUF
127.4
GTEX-ZTPG-1426-SM-51MT3
123.6
GTEX-UPIC-0926-SM-4IHLV
121.4
GTEX-1269C-0626-SM-5FQSS
118.9
GTEX-WYVS-1926-SM-4PQZ2
114.4
GTEX-WFON-1726-SM-4LVMQ
112.3
GTEX-11OF3-0726-SM-5BC4Z
111.2
GTEX-Y5LM-0426-SM-4VBRO
106.1
GTEX-QEL4-1226-SM-447A4
103.0
GTEX-X4EP-1026-SM-4QAS5
102.5
GTEX-13N2G-0926-SM-5IFGJ
97.7
GTEX-ZVP2-0626-SM-51MSO
94.1
GTEX-QV44-0326-SM-4R1KD
91.1
GTEX-12696-0826-SM-5EGGE
90.7
GTEX-13113-1326-SM-5GCOI
79.8
GTEX-YEC4-0826-SM-5P9FV
79.8
GTEX-139TU-0826-SM-5IJFG
63.8
GTEX-Q734-0326-SM-48U15
58.0
GTEX-S32W-1926-SM-4AD63
53.8
GTEX-13N11-0926-SM-5IJG2
53.4
GTEX-ZZPU-0426-SM-5GZYH
43.0
GTEX-12KS4-1326-SM-5LUB3
36.1
GTEX-X261-1726-SM-4PQYT
28.8
GTEX-12WSG-0626-SM-5FQTQ
25.2
GTEX-X4XY-1626-SM-46MVN
24.4
GTEX-13FTW-1126-SM-5J2NV
23.7
GTEX-14C38-1526-SM-5RQJ7
23.1
GTEX-145MO-2326-SM-5NQ9K
19.5
GTEX-S4Z8-0526-SM-4AD4T
18.2
GTEX-ZAB4-0826-SM-5LU9D
17.9
GTEX-QDVN-0826-SM-48TZ2
17.5
GTEX-WQUQ-1926-SM-4OOSA
16.7
GTEX-UPK5-1426-SM-4JBHH
16.2
GTEX-ZYY3-0626-SM-5NQ6W
13.2
GTEX-146FH-1526-SM-5NQBU
12.6
GTEX-139YR-0226-SM-5IFEM
12.4
GTEX-131XE-0326-SM-5LZVO
11.5
GTEX-ZPU1-0826-SM-57WG2
11.2
GTEX-132NY-0926-SM-5P9G3
8.5
GTEX-YB5E-0326-SM-5IFHU
7.2
GTEX-UTHO-2426-SM-4JBHD
5.1
GTEX-TKQ2-1726-SM-4DXUP
3.6
GTEX-12WSL-0226-SM-5CVMJ
3.2
GTEX-VUSG-0126-SM-4KL1X
2.3
GTEX-S33H-1626-SM-4AD68
2.0
GTEX-13NZ9-1326-SM-5MR3V
1.4
GTEX-13NZB-0626-SM-5IFH6
0.9
GTEX-144GM-1326-SM-5LU5E
0.4
GTEX-1497J-0726-SM-5Q5D1
0.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.