We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SPAG9
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:23.8TPM
GTEx:12.0RPKM
FANTOM5:81.4Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:High
 

Antibody staining

Antibody HPA040446

 

Glandular cells

High  
 
 
 

SMALL INTESTINE - HPA RNA-seq

Average TPM

23.8

overview Male, age 65
Sample 1
TPM: 20.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 24.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 24.5
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 25.7

SMALL INTESTINE - GTEx RNA-seq

Average RPKM

12.0

GTEx sample id

RPKM

 

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 12.0
Samples: 88

Max RPKM: 20.5
Min RPKM: 7.4
Std RPKM: 2.5
Median RPKM: 11.8
GTEX-ZQUD-0926-SM-57WE3 20.5
GTEX-12WSK-1526-SM-5CVNO 19.4
GTEX-13OVI-1926-SM-5IJCG 18.0
GTEX-13O21-1026-SM-5IJDU 17.7
GTEX-148VJ-2226-SM-5NQ9M 17.0
GTEX-145ME-0926-SM-5O9AR 16.2
GTEX-Y114-1426-SM-4TT6W 15.5
GTEX-ZF2S-1726-SM-57WFT 15.4
GTEX-13QBU-1926-SM-5IJEW 15.2
GTEX-117YX-0326-SM-5GICL 14.5
GTEX-ZVZP-1826-SM-5GZXB 14.3
GTEX-ZPCL-1726-SM-57WEO 14.2
GTEX-WEY5-1526-SM-4LMJF 14.2
GTEX-ZVT2-2126-SM-5NQ93 14.2
GTEX-111CU-1326-SM-5NQ8L 14.1
GTEX-ZTX8-0526-SM-59HLD 14.1
GTEX-ZTSS-0926-SM-59865 14.0
GTEX-145LT-1026-SM-5LU9O 14.0
GTEX-1192X-2526-SM-59868 13.7
GTEX-1399S-2026-SM-5KM4B 13.7
GTEX-13D11-0726-SM-5LZZB 13.5
GTEX-XMK1-1826-SM-4B66F 13.4
GTEX-13PL7-2626-SM-5IFH4 13.4
GTEX-ZQG8-2526-SM-57WEQ 13.2
GTEX-WFG7-1726-SM-4LVME 13.2
GTEX-XGQ4-1326-SM-4GIDU 13.0
GTEX-14DAR-1426-SM-5RQIR 12.9
GTEX-11P7K-1626-SM-5GU63 12.9
GTEX-ZXES-1526-SM-5NQ95 12.8
GTEX-ZZ64-0526-SM-5GZXM 12.8
GTEX-XBED-1426-SM-4AT4G 12.7
GTEX-13111-1426-SM-5DUW3 12.6
GTEX-1399U-2126-SM-5IFEZ 12.6
GTEX-Y3IK-1726-SM-4YCCR 12.3
GTEX-XAJ8-0526-SM-47JYK 12.2
GTEX-XXEK-1026-SM-4BRUW 12.2
GTEX-Y9LG-1626-SM-5IFHM 12.2
GTEX-13O61-1326-SM-5KM31 12.1
GTEX-11EQ9-1326-SM-5985X 12.0
GTEX-ZLV1-1126-SM-4WWBW 12.0
GTEX-YEC4-1726-SM-4W21E 12.0
GTEX-YF7O-1826-SM-5IFIU 11.9
GTEX-13113-1226-SM-5EGHT 11.9
GTEX-11DXX-1626-SM-5H11H 11.8
GTEX-131XG-1726-SM-5LZUR 11.8
GTEX-13RTK-0826-SM-5Q5C6 11.7
GTEX-1122O-1326-SM-5H11F 11.7
GTEX-13FTW-2026-SM-5IJE2 11.7
GTEX-ZTPG-2626-SM-57WFX 11.5
GTEX-139T6-1026-SM-5IJGC 11.5
GTEX-ZYWO-1526-SM-5SIAL 11.4
GTEX-11XUK-1426-SM-5EQMG 11.2
GTEX-111YS-1426-SM-5GID8 11.2
GTEX-ZLFU-1526-SM-4WWBT 11.1
GTEX-11DXZ-1326-SM-5H11X 11.1
GTEX-ZVP2-1726-SM-5GU5P 11.1
GTEX-ZP4G-1626-SM-57WGD 11.1
GTEX-ZPIC-2326-SM-57WDW 11.1
GTEX-YB5E-1526-SM-5IFIE 11.0
GTEX-Z9EW-0926-SM-5CVMM 10.9
GTEX-133LE-1426-SM-5IFH1 10.6
GTEX-13CF3-1226-SM-5LZXN 10.5
GTEX-XUZC-1426-SM-4BRV3 10.5
GTEX-139YR-2226-SM-5IFFW 10.4
GTEX-12BJ1-1926-SM-5HL9Z 10.4
GTEX-WFG8-1626-SM-4LVMB 10.3
GTEX-11I78-1126-SM-5A5K5 10.3
GTEX-14E6E-1626-SM-5RQI7 10.2
GTEX-11VI4-1626-SM-5EQKO 10.2
GTEX-13FH7-1226-SM-5IJFK 10.2
GTEX-ZYFG-2026-SM-5E43Y 10.2
GTEX-ZC5H-2326-SM-4WAYT 10.0
GTEX-131XF-1326-SM-5GCMQ 10.0
GTEX-WFJO-0926-SM-4LVM2 10.0
GTEX-11P82-0826-SM-5P9GU 9.9
GTEX-UPK5-2026-SM-4JBIM 9.6
GTEX-VUSG-1726-SM-4KKZL 9.1
GTEX-WRHK-1026-SM-4MVOD 9.1
GTEX-ZEX8-1826-SM-57WBH 9.0
GTEX-WH7G-1626-SM-4LVMY 8.9
GTEX-Y5LM-1626-SM-4VDTB 8.7
GTEX-11NSD-1726-SM-5N9C3 8.6
GTEX-ZA64-1226-SM-5HL7B 8.2
GTEX-X15G-1426-SM-4PQZK 8.0
GTEX-X5EB-1626-SM-4E3IV 8.0
GTEX-VJYA-0926-SM-4KL1N 7.9
GTEX-1399R-2026-SM-5K7WN 7.5
GTEX-WQUQ-2426-SM-4MVNW 7.4
Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million

81.4

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 81.4
FF:10024-101D6 15,40,85 years, mixed 81.4

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.