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Gene name

Class

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Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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BRCA1
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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:23.9TPM
GTEx:5.4RPKM
FANTOM5:24.8Tags Per Million

TESTIS - Annotated protein expression

Annotated protein
expression

Cells in seminiferous ducts:Medium
Leydig cells:Medium
 

Antibody staining

Antibody HPA034966

 

Antibody CAB001946

 

Cells in seminiferous ducts

High   Medium  

Leydig cells

Medium   Medium  
   
   
   

TESTIS - HPA RNA-seq

Average TPM

23.9

overview Male, age 56
Sample 1
TPM: 22.9
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 2
TPM: 19.8
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62
Sample 3
TPM: 30.5
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34
Sample 4
TPM: 15.7
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26
Sample 5
TPM: 18.1
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50
Sample 6
TPM: 31.1
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37
Sample 7
TPM: 19.8
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51
Sample 8
TPM: 37.1
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 9
TPM: 26.6
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26
Sample 10
TPM: 17.7
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seq

Average RPKM

5.4

GTEx sample id

RPKM

4.55.56.32.38.7012345678
 
4.55.56.32.38.7012345678

Testis

Testis
RPKM: 5.4
Samples: 172

Max RPKM: 8.7
Min RPKM: 1.7
Std RPKM: 1.2
Median RPKM: 5.5
GTEX-RM2N-1326-SM-48FCW 8.7
GTEX-13FTW-1326-SM-5LZZD 8.6
GTEX-132QS-1226-SM-5P9GD 8.1
GTEX-111CU-1726-SM-5EGHM 7.8
GTEX-11EQ9-1926-SM-5PNVV 7.8
GTEX-U4B1-1526-SM-4DXSL 7.7
GTEX-X5EB-2026-SM-4E3KA 7.7
GTEX-OXRL-2126-SM-3NM98 7.5
GTEX-XBED-2026-SM-4AT5D 7.5
GTEX-ZTSS-1526-SM-51MTC 7.4
GTEX-ZZ64-1126-SM-5GZXY 7.4
GTEX-XPVG-2226-SM-4B65U 7.3
GTEX-ZPU1-2126-SM-57WED 7.3
GTEX-ZV7C-2026-SM-5NQ8F 7.2
GTEX-139T6-1226-SM-5IFFC 7.1
GTEX-13O21-1226-SM-5J2MK 7.1
GTEX-OIZH-2126-SM-3NB1P 7.1
GTEX-YB5E-1926-SM-5IFIG 7.1
GTEX-145MH-2326-SM-5O9AW 7.0
GTEX-13O61-2026-SM-5J2M6 6.9
GTEX-SNMC-1026-SM-4DM7K 6.9
GTEX-U3ZM-1626-SM-4DXSK 6.9
GTEX-T8EM-0126-SM-4DM5R 6.8
GTEX-WHSB-2126-SM-4M1XF 6.8
GTEX-ZA64-1626-SM-5CVME 6.8
GTEX-OHPM-2126-SM-3LK75 6.7
GTEX-R55C-1426-SM-48FED 6.7
GTEX-S33H-0126-SM-4AD62 6.7
GTEX-11DXZ-2126-SM-59881 6.6
GTEX-11LCK-2326-SM-5HL53 6.6
GTEX-11P82-1526-SM-5BC5M 6.6
GTEX-QV31-1126-SM-4R1K4 6.6
GTEX-S4Q7-1226-SM-4AD5I 6.6
GTEX-WOFM-1126-SM-4OOSB 6.6
GTEX-ZDYS-1326-SM-5IJFF 6.6
GTEX-ZUA1-2726-SM-59HLJ 6.6
GTEX-QLQW-1026-SM-447A9 6.5
GTEX-O5YT-2126-SM-3MJGD 6.4
GTEX-Q2AI-1226-SM-48U14 6.4
GTEX-TKQ1-0926-SM-4DXU2 6.4
GTEX-XPT6-1626-SM-4B655 6.4
GTEX-Y5V6-1726-SM-4VDSZ 6.4
GTEX-111YS-2026-SM-5EGGL 6.3
GTEX-RUSQ-2126-SM-47JXK 6.3
GTEX-S7SE-0326-SM-4AT5Q 6.3
GTEX-ZVZP-2226-SM-57WBF 6.3
GTEX-111VG-1926-SM-5GIDO 6.2
GTEX-OOBJ-2126-SM-3NB1N 6.2
GTEX-TKQ2-1526-SM-4DXUN 6.2
GTEX-U3ZH-1526-SM-4DXV1 6.2
GTEX-144GM-0426-SM-5Q5C8 6.1
GTEX-145MO-0126-SM-5S2QU 6.1
GTEX-SNOS-1126-SM-4DM67 6.1
GTEX-XMK1-2026-SM-4B65K 6.1
GTEX-ZT9W-2226-SM-57WFU 6.1
GTEX-12C56-1426-SM-5FQSW 6.0
GTEX-S3XE-1526-SM-4AD5A 6.0
GTEX-OIZI-0126-SM-3NB13 5.9
GTEX-QLQ7-1426-SM-4R1JX 5.9
GTEX-REY6-0126-SM-48FDT 5.9
GTEX-13112-0226-SM-5P9IV 5.8
GTEX-147JS-0126-SM-5S2TW 5.8
GTEX-N7MS-0126-SM-3TW8O 5.8
GTEX-PLZ5-1526-SM-3P5ZX 5.8
GTEX-Q2AH-1526-SM-48TZG 5.8
GTEX-WFON-2026-SM-4LVMW 5.8
GTEX-WH7G-1926-SM-4LVMM 5.8
GTEX-Y111-2426-SM-4TT23 5.8
GTEX-ZDTT-2026-SM-5K7TY 5.8
GTEX-12ZZY-0126-SM-5LZV2 5.7
GTEX-P4QS-2126-SM-3NMCF 5.7
GTEX-X3Y1-2626-SM-4PQZI 5.7
GTEX-XBEC-0126-SM-4GIDT 5.7
GTEX-YEC3-1726-SM-5IFIK 5.7
GTEX-ZVTK-0126-SM-57WDG 5.7
GTEX-11NSD-1026-SM-5N9BE 5.6
GTEX-13111-1526-SM-5EGJX 5.6
GTEX-1399R-1626-SM-5P9GG 5.6
GTEX-OOBK-2126-SM-3LK5T 5.6
GTEX-QMRM-1526-SM-4R1K6 5.6
GTEX-U8XE-0126-SM-4E3I3 5.6
GTEX-XAJ8-1326-SM-47JYT 5.6
GTEX-11GS4-2026-SM-5N9CP 5.5
GTEX-1212Z-0326-SM-5FQSJ 5.5
GTEX-13NZB-2026-SM-5MR4M 5.5
GTEX-145LT-0426-SM-5LUAP 5.5
GTEX-13OW6-0126-SM-5IJGM 5.4
GTEX-XGQ4-2026-SM-4AT6G 5.4
GTEX-YFCO-1726-SM-4W21S 5.4
GTEX-11TT1-2226-SM-5GU6B 5.3
GTEX-14753-0626-SM-5Q5CY 5.3
GTEX-14ABY-0626-SM-5Q5C9 5.3
GTEX-NFK9-0126-SM-3LK5H 5.3
GTEX-RWSA-2426-SM-47JXR 5.3
GTEX-S95S-1126-SM-4B64E 5.3
GTEX-V1D1-2126-SM-4JBH4 5.3
GTEX-WFG8-1926-SM-4LVM1 5.3
GTEX-Y9LG-1726-SM-4VBQE 5.3
GTEX-YEC4-1526-SM-4W1YU 5.3
GTEX-11NUK-2626-SM-5A5MB 5.2
GTEX-WK11-0326-SM-4OOS6 5.2
GTEX-WZTO-0326-SM-4PQYZ 5.2
GTEX-Y8E4-2226-SM-5LU94 5.2
GTEX-117YW-1526-SM-5EGGP 5.1
GTEX-11NV4-1726-SM-5N9FC 5.1
GTEX-11TUW-2226-SM-5EQL9 5.1
GTEX-1339X-1926-SM-5PNVP 5.1
GTEX-13OVL-0426-SM-5IFG6 5.1
GTEX-11EI6-2226-SM-5EGJM 5.0
GTEX-139TS-1726-SM-5IJG5 5.0
GTEX-139TT-2226-SM-5LZWO 5.0
GTEX-13FHP-2826-SM-5IJFW 5.0
GTEX-UPJH-0126-SM-4IHLL 5.0
GTEX-13NYB-2226-SM-5MR58 4.9
GTEX-QV44-1726-SM-4R1KG 4.9
GTEX-T6MN-2026-SM-4DM7L 4.9
GTEX-ZAB5-2426-SM-5CVMW 4.9
GTEX-ZYFC-0126-SM-5GIEH 4.9
GTEX-11WQC-2326-SM-5EQKE 4.8
GTEX-RN64-2326-SM-48FDW 4.8
GTEX-S7PM-0626-SM-4AD4Q 4.8
GTEX-SUCS-1326-SM-4DM5T 4.8
GTEX-V955-1926-SM-4KL1L 4.8
GTEX-ZT9X-1426-SM-5DUX1 4.8
GTEX-13N2G-0126-SM-5N9DV 4.7
GTEX-13VXU-0726-SM-5J2O7 4.6
GTEX-144GN-1626-SM-5Q5BU 4.6
GTEX-ZTX8-1126-SM-51MRM 4.6
GTEX-11P7K-1026-SM-5HL6Y 4.5
GTEX-144GL-0726-SM-5LU4P 4.5
GTEX-VJYA-1426-SM-4KL1Y 4.5
GTEX-ZYT6-2726-SM-5GICP 4.5
GTEX-117XS-2026-SM-5GID1 4.4
GTEX-11ONC-2226-SM-5HL6D 4.4
GTEX-11ZUS-2726-SM-5FQUA 4.4
GTEX-12WSI-2126-SM-5GCMV 4.4
GTEX-WVLH-2626-SM-4MVNV 4.4
GTEX-YJ89-0626-SM-4TT3Z 4.4
GTEX-131XE-0426-SM-5IJF4 4.3
GTEX-13OW5-2526-SM-5L3I1 4.3
GTEX-R55E-0726-SM-48FCZ 4.3
GTEX-XQ3S-2726-SM-4BOP2 4.3
GTEX-YF7O-2026-SM-4W1YE 4.3
GTEX-13NZA-2526-SM-5IJFX 4.2
GTEX-111FC-1926-SM-5GZYC 4.1
GTEX-13O1R-0726-SM-5IJEI 4.1
GTEX-QEG4-0126-SM-48TZE 4.1
GTEX-12WSH-0326-SM-5GCNH 4.0
GTEX-12WSL-2326-SM-5DUXQ 4.0
GTEX-R55D-0126-SM-48FEL 4.0
GTEX-12696-0226-SM-5EGL3 3.9
GTEX-13FLW-2126-SM-5N9FD 3.9
GTEX-13N1W-2626-SM-5IJEP 3.9
GTEX-ZQUD-2026-SM-51MSM 3.9
GTEX-11OF3-1826-SM-5987N 3.8
GTEX-1399Q-2826-SM-5IJEZ 3.8
GTEX-11WQK-2826-SM-5EQKH 3.7
GTEX-12WSM-1326-SM-5GCP9 3.6
GTEX-PW2O-1426-SM-48TCD 3.6
GTEX-XLM4-1526-SM-4AT6D 3.6
GTEX-11O72-0726-SM-5P9GO 3.5
GTEX-T5JC-0726-SM-4DM55 3.4
GTEX-U8T8-1126-SM-4DXUE 3.2
GTEX-13OVH-0726-SM-5N9BU 3.0
GTEX-14A6H-2326-SM-5Q5B5 3.0
GTEX-X261-2326-SM-4PQYU 3.0
GTEX-Z93S-1726-SM-5HL8G 3.0
GTEX-147F4-0626-SM-5LUAK 2.7
GTEX-11EQ8-1426-SM-5EGJR 2.5
GTEX-QEG5-0126-SM-4R1JR 2.3
GTEX-ZAB4-0126-SM-5CVMG 2.3
GTEX-P4QR-0226-SM-3NMCH 1.7
Show all

TESTIS - FANTOM5 CAGE

Average Tags Per Million

24.8

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 24.8
FF:10096-102C6 14-64 years, male 28.4
FF:10026-101D8 34,53,86 years, male 21.2

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