We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
KDM5D
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA LIVER

GENE/PROTEIN

Antibody validation


Dictionary

Liver

Tissue proteome

Liver

LIVER - Expression summary

RNA expression

HPA:3.8TPM
GTEx:6.0RPKM
FANTOM5:7.9Tags Per Million

LIVER - Annotated protein expression

 

Antibody staining

Antibody HPA049086

 

Antibody HPA060807

 

Bile duct cells

Not detected   Low  

Hepatocytes

Not detected   Medium  
   
   
   

LIVER - HPA RNA-seq

Average TPM

3.8

N/A Female, age 60
Sample 1
TPM: 0.2
overview Male, age 54
Sample 2
TPM: 7.0
Cell types%
Hepatocytes: 80
Fibroblasts: 15
Other cell types: 5
overview Male, age 74
Sample 3
TPM: 5.1
Cell types%
Hepatocytes: 85
Fibroblasts: 5
Other cell types: 10
overview Female, age 62
Sample 4
TPM: 0.0
Cell types%
Hepatocytes: 70
Fibroblasts: 10
Other cell types: 20
overview Male, age 78
Sample 5
TPM: 5.5
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Male, age 53
Sample 6
TPM: 7.6
Cell types%
Hepatocytes: 80
Fibroblasts: 5
Other cell types: 15
overview Male, age 77
Sample 7
TPM: 5.7
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Female, age 72
Sample 8
TPM: 0.0
Cell types%
Hepatocytes: 50
Fibroblasts: 10
Other cell types: 40
overview Male, age 70
Sample 9
TPM: 6.8
Cell types%
Hepatocytes: 65
Fibroblasts: 10
Other cell types: 25
overview Female, age 23
Sample 10
TPM: 0.0
Cell types%
Hepatocytes: 70
Fibroblasts: 5
Other cell types: 25

LIVER - GTEx RNA-seq

Average RPKM

6.0

GTEx sample id

RPKM

 

Liver

Liver
RPKM: 6.0
Samples: 119

Max RPKM: 17.1
Min RPKM: 0
Std RPKM: 4.9
Median RPKM: 7.1
GTEX-ZAB4-0826-SM-5LU9D 17.1
GTEX-UTHO-2426-SM-4JBHD 15.5
GTEX-11NUK-1226-SM-5P9GM 15.3
GTEX-13OW6-2626-SM-5IFF2 15.0
GTEX-XBEC-1526-SM-4AT68 14.8
GTEX-1497J-0726-SM-5Q5D1 14.4
GTEX-T6MN-1226-SM-3NMA5 14.4
GTEX-X4XY-1626-SM-46MVN 13.5
GTEX-13NYB-1026-SM-5IFH3 13.2
GTEX-13N2G-0926-SM-5IFGJ 12.1
GTEX-QEL4-1226-SM-447A4 12.0
GTEX-11NV4-1326-SM-5HL6V 11.7
GTEX-S33H-1626-SM-4AD68 11.7
GTEX-11OF3-0726-SM-5BC4Z 11.1
GTEX-13NZB-0626-SM-5IFH6 10.9
GTEX-1399T-0826-SM-5IFES 10.8
GTEX-REY6-1226-SM-48FDR 10.8
GTEX-RN64-1826-SM-48FDV 10.7
GTEX-145LU-1326-SM-5LU9N 10.5
GTEX-SJXC-1226-SM-4DM78 10.4
GTEX-YECK-1926-SM-4W21H 10.4
GTEX-11WQC-0726-SM-5EQMR 10.3
GTEX-WQUQ-1926-SM-4OOSA 10.3
GTEX-13VXU-0926-SM-5IFFH 10.2
GTEX-X261-1726-SM-4PQYT 10.2
GTEX-UPK5-1426-SM-4JBHH 10.0
GTEX-11DXY-0526-SM-5EGGQ 9.9
GTEX-12WSI-0226-SM-5GCNA 9.9
GTEX-QEG4-1826-SM-4R1JN 9.8
GTEX-139TU-0826-SM-5IJFG 9.7
GTEX-XOTO-0826-SM-4B65O 9.7
GTEX-WZTO-0626-SM-4PQYY 9.6
GTEX-131XE-0326-SM-5LZVO 9.5
GTEX-ZAB5-0426-SM-5CVMI 9.5
GTEX-147F4-1426-SM-5LUA8 9.4
GTEX-13112-1426-SM-5EGH8 9.3
GTEX-1212Z-0226-SM-59HLF 9.1
GTEX-132NY-0926-SM-5P9G3 9.1
GTEX-13FTZ-0726-SM-5IFFY 9.0
GTEX-12WSM-0726-SM-5GCOW 8.9
GTEX-139TS-1426-SM-5IFJD 8.9
GTEX-13FLV-0326-SM-5N9DJ 8.9
GTEX-OOBJ-0826-SM-3NB2K 8.9
GTEX-12KS4-1326-SM-5LUB3 8.8
GTEX-ZYT6-0626-SM-5E45V 8.8
GTEX-QV44-0326-SM-4R1KD 8.4
GTEX-11DXZ-0126-SM-5EGGY 8.3
GTEX-13NZ9-1326-SM-5MR3V 8.3
GTEX-QDVN-0826-SM-48TZ2 8.3
GTEX-12696-0826-SM-5EGGE 8.1
GTEX-1399R-1226-SM-5P9GF 8.0
GTEX-147JS-1126-SM-5RQIW 7.9
GTEX-145MF-0826-SM-5QGQA 7.8
GTEX-131XH-0626-SM-5LZWH 7.5
GTEX-RWSA-1426-SM-47JXA 7.4
GTEX-13FTW-1126-SM-5J2NV 7.3
GTEX-14E1K-0326-SM-5S2PE 7.3
GTEX-12ZZZ-1326-SM-59HKW 7.1
GTEX-139YR-0226-SM-5IFEM 7.1
GTEX-145MO-2326-SM-5NQ9K 7.1
GTEX-QESD-2026-SM-447BI 7.1
GTEX-WFON-1726-SM-4LVMQ 7.1
GTEX-11EQ9-0526-SM-5A5JZ 6.9
GTEX-S4Z8-0526-SM-4AD4T 6.9
GTEX-ZVP2-0626-SM-51MSO 6.9
GTEX-11ZUS-2526-SM-59872 6.8
GTEX-YEC4-0826-SM-5P9FV 6.8
GTEX-X3Y1-2726-SM-4PQZH 6.7
GTEX-14C38-1526-SM-5RQJ7 6.3
GTEX-RM2N-1926-SM-48FCU 6.3
GTEX-12WSL-0226-SM-5CVMJ 5.9
GTEX-VUSG-0126-SM-4KL1X 5.5
GTEX-TKQ2-1726-SM-4DXUP 5.4
GTEX-ZPU1-0826-SM-57WG2 5.1
GTEX-YB5E-0326-SM-5IFHU 4.4
GTEX-14753-1626-SM-5NQ9L 4.1
GTEX-Z9EW-0426-SM-5CVM9 4.1
GTEX-144GM-1326-SM-5LU5E 3.9
GTEX-11GSP-0626-SM-5986T 0.2
GTEX-PX3G-0826-SM-48TZS 0.2
GTEX-S32W-1926-SM-4AD63 0.1
GTEX-11ZTS-1426-SM-5EQMM 0.0
GTEX-11ZVC-0726-SM-5FQT9 0.0
GTEX-1269C-0626-SM-5FQSS 0.0
GTEX-12WSD-1426-SM-5GCN9 0.0
GTEX-12WSG-0626-SM-5FQTQ 0.0
GTEX-13113-1326-SM-5GCOI 0.0
GTEX-131YS-1626-SM-5HL6C 0.0
GTEX-13N11-0926-SM-5IJG2 0.0
GTEX-13O3O-1826-SM-5IFGW 0.0
GTEX-13PVR-0126-SM-5S2PY 0.0
GTEX-13QJC-0726-SM-5RQJK 0.0
GTEX-13SLX-1226-SM-5S2Q6 0.0
GTEX-146FH-1526-SM-5NQBU 0.0
GTEX-14A5I-1726-SM-5QGQ5 0.0
GTEX-14AS3-0126-SM-5Q5F4 0.0
GTEX-14DAQ-1726-SM-5S2R2 0.0
GTEX-P78B-1326-SM-3P611 0.0
GTEX-Q2AG-1126-SM-48U1P 0.0
GTEX-Q734-0326-SM-48U15 0.0
GTEX-R53T-0326-SM-48FEC 0.0
GTEX-RNOR-1426-SM-48FDJ 0.0
GTEX-RTLS-1326-SM-46MUN 0.0
GTEX-RU72-1426-SM-46MUF 0.0
GTEX-U3ZN-0226-SM-3DB8D 0.0
GTEX-UPIC-0926-SM-4IHLV 0.0
GTEX-WYVS-1926-SM-4PQZ2 0.0
GTEX-X4EO-1126-SM-4QARQ 0.0
GTEX-X4EP-1026-SM-4QAS5 0.0
GTEX-Y5LM-0426-SM-4VBRO 0.0
GTEX-Y5V5-0926-SM-4VBPZ 0.0
GTEX-YFC4-1526-SM-5IFJS 0.0
GTEX-ZF29-2026-SM-4WWB7 0.0
GTEX-ZF2S-3026-SM-4WWCH 0.0
GTEX-ZTPG-1426-SM-51MT3 0.0
GTEX-ZVT3-1626-SM-5GU66 0.0
GTEX-ZVT4-0626-SM-5E45T 0.0
GTEX-ZYY3-0626-SM-5NQ6W 0.0
GTEX-ZZPU-0426-SM-5GZYH 0.0
Show all

LIVER - FANTOM5 CAGE

Average Tags Per Million

7.9

FANTOM5 sample id

Sample description

Tags Per Million

Liver
Tags Per Million: 7.9
FF:10018-101C9 64,69,70 years, mixed 7.9

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.