We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
NCDN
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:360.4RPKM
FANTOM5:2226.5Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA023676

 

Glial cells

Not detected  

Neuronal cells

High  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

360.4

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 360.4
Samples: 117

Max RPKM: 908.7
Min RPKM: 36.1
Std RPKM: 209.6
Median RPKM: 364.9
GTEX-13G51-0011-R5a-SM-5L3EB 908.7
GTEX-131YS-0011-R5b-SM-5K7YB 863.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 823.3
GTEX-T6MN-0011-R5A-SM-32QPD 822.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 801.0
GTEX-T5JC-0011-R5A-SM-32PLK 707.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 700.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 694.5
GTEX-1313W-0011-R5b-SM-5L3EP 674.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 663.2
GTEX-11OF3-0011-R5a-SM-57WB4 661.9
GTEX-145MH-0011-R5a-SM-5P9JT 646.8
GTEX-P44H-0011-R5A-SM-2XCEX 606.0
GTEX-UTHO-0011-R5A-SM-3GIJD 599.6
GTEX-RU72-0011-R5A-SM-2TF6U 595.2
GTEX-14BIM-0011-R5b-SM-5S2RM 588.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 585.5
GTEX-WL46-0011-R5A-SM-3LK6V 581.5
GTEX-11GSP-0011-R5a-SM-57WBE 577.9
GTEX-S7SE-0011-R5A-SM-2XCDA 574.5
GTEX-12WSC-0011-R5b-SM-5CVNS 564.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 563.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 548.2
GTEX-13SLX-0011-R5a-SM-5O9BV 544.0
GTEX-13X6K-0011-R5b-SM-5PNUE 540.3
GTEX-145LS-0011-R5a-SM-5SI65 533.4
GTEX-13CZV-0011-R5a-SM-5K7XA 520.6
GTEX-11H98-0011-R5b-SM-57WCF 517.4
GTEX-13VXU-0011-R5a-SM-5O9D7 516.8
GTEX-QVJO-0011-R5A-SM-2S1QM 516.0
GTEX-13O3O-0011-R5b-SM-5KM44 511.5
GTEX-ZUA1-0011-R5b-SM-51MTG 508.8
GTEX-1399T-0011-R5b-SM-5IJDK 507.1
GTEX-N7MS-0011-R5a-SM-2HMK8 498.7
GTEX-14ABY-0011-R5b-SM-5SI7B 495.5
GTEX-13X6J-0011-R5b-SM-5PNWT 482.0
GTEX-13FXS-0011-R5b-SM-5LZYE 472.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 465.3
GTEX-N7MT-0011-R5a-SM-2I3G6 449.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 442.1
GTEX-132Q8-0011-R5a-SM-5IJDM 435.3
GTEX-13JUV-0011-R5a-SM-5LZY5 429.7
GTEX-13OVL-0011-R5b-SM-5L3FU 427.6
GTEX-13OW5-0011-R5b-SM-5L3FR 423.0
GTEX-TSE9-0011-R5A-SM-3DB7J 422.8
GTEX-WVLH-0011-R5A-SM-3MJFW 413.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 405.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 402.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 399.6
GTEX-R55E-0011-R5A-SM-2TC5N 397.5
GTEX-WZTO-0011-R5B-SM-3NMC5 391.7
GTEX-WWYW-0011-R5A-SM-3NB3E 390.1
GTEX-11NV4-0011-R5a-SM-5NQ88 387.7
GTEX-13FLW-0011-R5a-SM-5LZX6 381.0
GTEX-RVPU-0011-R5A-SM-2XCAD 379.4
GTEX-13S7M-0011-R5b-SM-5P9HS 375.3
GTEX-T2IS-0011-R5A-SM-32QP4 374.2
GTEX-13OW6-0011-R5a-SM-5O9BK 370.3
GTEX-13OVH-0011-R5b-SM-5KM4L 364.9
GTEX-ZE7O-0011-R5a-SM-57WBO 355.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 347.6
GTEX-Z93S-0011-R5b-SM-4RGNI 338.9
GTEX-13OW7-0011-R5b-SM-5O9DM 335.6
GTEX-13NYS-0011-R5a-SM-5MR4D 332.3
GTEX-13X6I-0011-R5a-SM-5PNWW 326.7
GTEX-X585-0011-R5A-SM-46MVI 322.2
GTEX-12WSF-0011-R5a-SM-5HL8K 311.6
GTEX-12WSD-0011-R5b-SM-5CVNG 308.0
GTEX-RVPV-0011-R5A-SM-2TF69 306.0
GTEX-139TT-0011-R5b-SM-5K7W8 304.2
GTEX-PVOW-0011-R5A-SM-32PL7 300.3
GTEX-OHPN-0011-R5A-SM-2I5FF 288.8
GTEX-13CIG-0011-R5b-SM-5L3F2 269.1
GTEX-ZXG5-0011-R5b-SM-57WBN 260.6
GTEX-13JVG-0011-R5a-SM-5MR4O 252.9
GTEX-NL4W-0011-R5a-SM-2I3GD 247.5
GTEX-XOTO-0011-R5A-SM-4B657 244.6
GTEX-13NYB-0011-R5a-SM-5MR45 243.4
GTEX-12WSB-0011-R5b-SM-5GU67 242.2
GTEX-OXRN-0011-R5A-SM-2I5EF 238.3
GTEX-XMD1-0011-R5A-SM-4AT47 231.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 227.5
GTEX-13FLV-0011-R5a-SM-5LZWT 217.4
GTEX-YJ89-0011-R5a-SM-4V6GM 217.1
GTEX-14BIN-0011-R5b-SM-5SI78 213.2
GTEX-12ZZX-0011-R5a-SM-5HL89 212.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 206.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 192.7
GTEX-YFC4-0011-R5a-SM-4RGLR 187.4
GTEX-144GO-0011-R5a-SM-5PNUR 156.1
GTEX-QMR6-0011-R5A-SM-32PKT 154.6
GTEX-NL3H-0011-R5a-SM-2I3GB 146.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 144.1
GTEX-ZV68-0011-R5a-SM-4YCDW 126.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 124.3
GTEX-13112-0011-R5b-SM-5DUV8 120.4
GTEX-12WSA-0011-R5b-SM-5GU5I 112.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 111.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 109.2
GTEX-ZVT3-0011-R5a-SM-51MSI 104.7
GTEX-144GL-0011-R5b-SM-5PNUJ 102.7
GTEX-11WQC-0011-R5a-SM-5BC74 94.0
GTEX-NPJ7-0011-R5a-SM-33HBK 93.3
GTEX-X4XX-0011-R5A-SM-46MWN 92.0
GTEX-X261-0011-R5A-SM-3NMB4 89.2
GTEX-1477Z-0011-R5b-SM-5PNUO 86.1
GTEX-12WSH-0011-R5b-SM-5P9F3 83.6
GTEX-1445S-0011-R5a-SM-5PNUS 75.8
GTEX-13FHP-0011-R5b-SM-5LZY2 74.2
GTEX-13CF2-0011-R5a-SM-5LZWS 71.9
GTEX-139TS-0011-R5b-SM-5J2MZ 71.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 63.6
GTEX-S7PM-0011-R5A-SM-3NM8G 56.0
GTEX-11UD1-0011-R5b-SM-5P9FP 53.6
GTEX-139T8-0011-R5b-SM-5J1MO 49.0
GTEX-145MG-0011-R5b-SM-5S2VU 41.4
GTEX-13NZA-0011-R5b-SM-5KM4K 36.1
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

2226.5

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 2226.5
FF:10379-105H1 89 years, female 2695.8
FF:10164-103B2 76 years, female 1757.2

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.