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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:113.5RPKM
FANTOM5:420.8Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA001762

 

Antibody CAB000080

 

Antibody CAB058687

 

Glial cells

Medium   Medium   Medium  

Neuronal cells

Low   Not detected   Low  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

113.5

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 113.5
Samples: 117

Max RPKM: 512.8
Min RPKM: 26.1
Std RPKM: 69.2
Median RPKM: 97.5
GTEX-132Q8-0011-R5a-SM-5IJDM 512.8
GTEX-13JUV-0011-R5a-SM-5LZY5 387.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 347.5
GTEX-OHPN-0011-R5A-SM-2I5FF 312.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 288.4
GTEX-139T8-0011-R5b-SM-5J1MO 283.1
GTEX-XMD1-0011-R5A-SM-4AT47 259.9
GTEX-13NYS-0011-R5a-SM-5MR4D 259.4
GTEX-X261-0011-R5A-SM-3NMB4 179.1
GTEX-11H98-0011-R5b-SM-57WCF 177.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 167.1
GTEX-13FLV-0011-R5a-SM-5LZWT 163.1
GTEX-12WSA-0011-R5b-SM-5GU5I 154.8
GTEX-12WSB-0011-R5b-SM-5GU67 147.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 146.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 145.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 145.1
GTEX-139TS-0011-R5b-SM-5J2MZ 141.3
GTEX-ZV68-0011-R5a-SM-4YCDW 140.7
GTEX-NL3H-0011-R5a-SM-2I3GB 137.6
GTEX-NL4W-0011-R5a-SM-2I3GD 136.8
GTEX-OXRN-0011-R5A-SM-2I5EF 136.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 135.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 134.8
GTEX-P44H-0011-R5A-SM-2XCEX 132.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 131.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 129.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 127.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 124.3
GTEX-13X6I-0011-R5a-SM-5PNWW 121.9
GTEX-144GO-0011-R5a-SM-5PNUR 121.3
GTEX-QMR6-0011-R5A-SM-32PKT 120.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 119.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 117.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 116.5
GTEX-13X6K-0011-R5b-SM-5PNUE 116.3
GTEX-RU72-0011-R5A-SM-2TF6U 115.3
GTEX-ZXG5-0011-R5b-SM-57WBN 114.4
GTEX-R55E-0011-R5A-SM-2TC5N 113.9
GTEX-WWYW-0011-R5A-SM-3NB3E 112.2
GTEX-13CIG-0011-R5b-SM-5L3F2 111.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 109.1
GTEX-T6MN-0011-R5A-SM-32QPD 109.0
GTEX-11GSP-0011-R5a-SM-57WBE 107.2
GTEX-N7MT-0011-R5a-SM-2I3G6 106.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 106.4
GTEX-13112-0011-R5b-SM-5DUV8 106.3
GTEX-11WQC-0011-R5a-SM-5BC74 104.7
GTEX-1445S-0011-R5a-SM-5PNUS 104.7
GTEX-ZE7O-0011-R5a-SM-57WBO 104.3
GTEX-QVJO-0011-R5A-SM-2S1QM 102.8
GTEX-13OW6-0011-R5a-SM-5O9BK 102.2
GTEX-13OW7-0011-R5b-SM-5O9DM 101.8
GTEX-NPJ7-0011-R5a-SM-33HBK 101.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 101.6
GTEX-WVLH-0011-R5A-SM-3MJFW 101.1
GTEX-RVPV-0011-R5A-SM-2TF69 99.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 98.5
GTEX-14BIM-0011-R5b-SM-5S2RM 97.5
GTEX-S7PM-0011-R5A-SM-3NM8G 96.8
GTEX-S7SE-0011-R5A-SM-2XCDA 96.0
GTEX-1399T-0011-R5b-SM-5IJDK 95.9
GTEX-13JVG-0011-R5a-SM-5MR4O 95.8
GTEX-13CF2-0011-R5a-SM-5LZWS 95.2
GTEX-XOTO-0011-R5A-SM-4B657 94.8
GTEX-13CZV-0011-R5a-SM-5K7XA 94.4
GTEX-13FLW-0011-R5a-SM-5LZX6 94.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 93.7
GTEX-13OVL-0011-R5b-SM-5L3FU 93.0
GTEX-ZUA1-0011-R5b-SM-51MTG 89.7
GTEX-144GL-0011-R5b-SM-5PNUJ 89.0
GTEX-X4XX-0011-R5A-SM-46MWN 88.1
GTEX-RVPU-0011-R5A-SM-2XCAD 87.6
GTEX-TSE9-0011-R5A-SM-3DB7J 87.1
GTEX-WZTO-0011-R5B-SM-3NMC5 86.4
GTEX-12WSF-0011-R5a-SM-5HL8K 86.3
GTEX-N7MS-0011-R5a-SM-2HMK8 86.0
GTEX-13NZA-0011-R5b-SM-5KM4K 85.6
GTEX-ZVT3-0011-R5a-SM-51MSI 83.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 82.7
GTEX-13FHP-0011-R5b-SM-5LZY2 82.1
GTEX-145LS-0011-R5a-SM-5SI65 81.9
GTEX-YFC4-0011-R5a-SM-4RGLR 81.8
GTEX-1477Z-0011-R5b-SM-5PNUO 81.6
GTEX-PVOW-0011-R5A-SM-32PL7 80.6
GTEX-13OW5-0011-R5b-SM-5L3FR 79.6
GTEX-13G51-0011-R5a-SM-5L3EB 78.0
GTEX-X585-0011-R5A-SM-46MVI 78.0
GTEX-14ABY-0011-R5b-SM-5SI7B 76.7
GTEX-13NYB-0011-R5a-SM-5MR45 76.5
GTEX-14BIN-0011-R5b-SM-5SI78 76.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 76.2
GTEX-11OF3-0011-R5a-SM-57WB4 74.3
GTEX-12WSC-0011-R5b-SM-5CVNS 73.2
GTEX-T5JC-0011-R5A-SM-32PLK 71.6
GTEX-13VXU-0011-R5a-SM-5O9D7 69.7
GTEX-145MG-0011-R5b-SM-5S2VU 69.0
GTEX-13OVH-0011-R5b-SM-5KM4L 68.3
GTEX-131YS-0011-R5b-SM-5K7YB 67.8
GTEX-13FXS-0011-R5b-SM-5LZYE 67.3
GTEX-12WSD-0011-R5b-SM-5CVNG 67.1
GTEX-UTHO-0011-R5A-SM-3GIJD 66.8
GTEX-13SLX-0011-R5a-SM-5O9BV 65.6
GTEX-11UD1-0011-R5b-SM-5P9FP 64.6
GTEX-13X6J-0011-R5b-SM-5PNWT 60.4
GTEX-YJ89-0011-R5a-SM-4V6GM 58.2
GTEX-12ZZX-0011-R5a-SM-5HL89 57.1
GTEX-139TT-0011-R5b-SM-5K7W8 56.7
GTEX-145MH-0011-R5a-SM-5P9JT 55.8
GTEX-1313W-0011-R5b-SM-5L3EP 55.1
GTEX-WL46-0011-R5A-SM-3LK6V 52.3
GTEX-13O3O-0011-R5b-SM-5KM44 50.5
GTEX-13S7M-0011-R5b-SM-5P9HS 50.3
GTEX-T2IS-0011-R5A-SM-32QP4 47.5
GTEX-11NV4-0011-R5a-SM-5NQ88 47.0
GTEX-12WSH-0011-R5b-SM-5P9F3 33.3
GTEX-Z93S-0011-R5b-SM-4RGNI 26.1
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

420.8

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 420.8
FF:10164-103B2 76 years, female 462.6
FF:10379-105H1 89 years, female 379.0

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