Tissue expression of HMG20B - Summary - The Human Protein Atlas

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HMG20B

TISSUE

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CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	HMG20B
Gene description	High mobility group 20B
Protein class	Predicted intracellular proteins Transcription factors
Predicted localization	Intracellular
Number of transcripts	6
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Ubiquitous nuclear expression.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data.
Reliability score	Approved based on 1 antibody. HPA069832
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	HMG20B (HGNC Symbol)
Synonyms	BRAF25, BRAF35, HMGX2, HMGXB2, SMARCE1r, SOXL
Description	High mobility group 20B (HGNC Symbol)
Entrez gene summary
Chromosome	19
Cytoband	p13.3
Chromosome location (bp)	3572777 - 3579088
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000064961 (version 83.38)
Entrez gene	10362
UniProt	Q9P0W2 (UniProt - Evidence at protein level)
neXtProt	NX_Q9P0W2
Antibodypedia	HMG20B antibodies

PROTEIN BROWSER

HMG20B-001	HMG20B-005	HMG20B-007	HMG20B-011	HMG20B-013	HMG20B-018

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
HMG20B-001 ENSP00000328269 ENST00000333651	Q9P0W2 [Direct mapping] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related Show all	Predicted intracellular proteins Transcription factors Other all-alpha-helical DNA-binding domains Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003677 [DNA binding] GO:0003682 [chromatin binding] GO:0005515 [protein binding] GO:0005654 [nucleoplasm] GO:0005694 [chromosome] GO:0006325 [chromatin organization] GO:0006338 [chromatin remodeling] GO:0006351 [transcription, DNA-templated] GO:0006355 [regulation of transcription, DNA-templated] GO:0007049 [cell cycle] GO:0007596 [blood coagulation] GO:0033234 [negative regulation of protein sumoylation] GO:0035914 [skeletal muscle cell differentiation] GO:0045666 [positive regulation of neuron differentiation] GO:0046982 [protein heterodimerization activity] Show all	317 aa 35.8 kDa	No	0
HMG20B-005 ENSP00000410924 ENST00000416526	C9J8X5 [Direct mapping] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0003682 [chromatin binding] GO:0005654 [nucleoplasm] GO:0006338 [chromatin remodeling] GO:0006355 [regulation of transcription, DNA-templated] Show all	215 aa 24.4 kDa	No	0
HMG20B-007 ENSP00000402877 ENST00000453933	C9JQA7 [Direct mapping] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0003682 [chromatin binding] GO:0006338 [chromatin remodeling] GO:0006355 [regulation of transcription, DNA-templated] Show all	142 aa 16 kDa	No	0
HMG20B-011 ENSP00000262949 ENST00000262949	B5MDG7 [Direct mapping] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0003682 [chromatin binding] GO:0005654 [nucleoplasm] GO:0006338 [chromatin remodeling] GO:0006355 [regulation of transcription, DNA-templated] Show all	286 aa 31.2 kDa	No	0
HMG20B-013 ENSP00000393904 ENST00000417382	C9K049 [Direct mapping] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0003682 [chromatin binding] GO:0006338 [chromatin remodeling] GO:0006355 [regulation of transcription, DNA-templated] Show all	165 aa 18.8 kDa	No	0
HMG20B-018 ENSP00000465293 ENST00000585900	K7EJR8 [Direct mapping] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0003682 [chromatin binding] GO:0005654 [nucleoplasm] GO:0006338 [chromatin remodeling] GO:0006355 [regulation of transcription, DNA-templated] Show all	184 aa 20.5 kDa	No	0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.