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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

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Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

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Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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SMARCD1
  • premium

    TISSUE

  • CELL

  • CANCER

CANCER ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

CANCER ATLAS

Gene description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1

Protein class

Cancer-related genes, Predicted intracellular proteins

Protein evidence

Evidence at protein level
Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer
Liver cancer

STAINING SUMMARY

HPA004101

Tissue

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Tissue

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Most malignant cells displayed moderate to strong nuclear immunoreactivity.

GENE INFORMATION

Gene name

SMARCD1 (HGNC Symbol)

Synonyms

BAF60A, CRACD1, Rsc6p

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and has sequence similarity to the yeast Swp73 protein. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Chromosome

12

Cytoband

q13.12

Chromosome location (bp)

50084972 - 50100712

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000066117 (version 83.38)

Entrez gene

6602

UniProt

Q96GM5 (UniProt - Evidence at protein level)

neXtProt

NX_Q96GM5

Antibodypedia

SMARCD1 antibodies

PROTEIN BROWSER

SMARCD1-001
SMARCD1-002
SMARCD1-004
SMARCD1-010
SMARCD1-011
SMARCD1-012

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

SMARCD1-001
ENSP00000378414
ENST00000394963
Q96GM5 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0003713 [transcription coactivator activity]
GO:0005102 [receptor binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0006337 [nucleosome disassembly]
GO:0006338 [chromatin remodeling]
GO:0006357 [regulation of transcription from RNA polymerase II promoter]
GO:0007399 [nervous system development]
GO:0016514 [SWI/SNF complex]
GO:0032947 [protein complex scaffold]
GO:0048096 [chromatin-mediated maintenance of transcription]
GO:0071398 [cellular response to fatty acid]
GO:0071564 [npBAF complex]
GO:0071565 [nBAF complex]
GO:0090544 [BAF-type complex]
Show all
515 aa
58.2 kDa
No 0
SMARCD1-002
ENSP00000370924
ENST00000381513
Q96GM5 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003713 [transcription coactivator activity]
GO:0005515 [protein binding]
GO:0006337 [nucleosome disassembly]
GO:0006338 [chromatin remodeling]
GO:0006357 [regulation of transcription from RNA polymerase II promoter]
GO:0007399 [nervous system development]
GO:0016514 [SWI/SNF complex]
GO:0032947 [protein complex scaffold]
GO:0048096 [chromatin-mediated maintenance of transcription]
GO:0071564 [npBAF complex]
GO:0071565 [nBAF complex]
Show all
474 aa
53.3 kDa
No 0
SMARCD1-004
ENSP00000449825
ENST00000551497
F8VW95 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
113 aa
12.8 kDa
No 0
SMARCD1-010
ENSP00000448030
ENST00000550477
F8VUB0 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
290 aa
32.1 kDa
No 0
SMARCD1-011
ENSP00000447386
ENST00000551966
F8VZ70 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
278 aa
30.3 kDa
No 0
SMARCD1-012
ENSP00000448627
ENST00000548573
F8VRQ4 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
313 aa
36.8 kDa
No 0

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