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Field

Term
Gene name

Class

Subclass

Chromosome

External id

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Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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DDX3Y
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA001648

 

Antibody HPA005631

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
 

Product name

HPA001648   HPA005631  

Host species

Rabbit   Rabbit  

Clonality

pAb   pAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand  

Other gene match

DDX3X - ENSG00000215301 [100%]
  DDX3X - ENSG00000215301 [100%]
 

Released in version

1   3  

References

   

VALIDATION SUMMARY

 
 

Antibody HPA001648

 

Antibody HPA005631

 
Immunocytochemistry

Supported   Supported  
Immunohistochemistry

Uncertain   Uncertain  
Western blot

Supported   Supported  
Protein array

Supported   Supported  

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA001648

 

Antibody HPA005631

 

Standard validation

Supported   Supported  

   

Figure description

Immunofluorescent staining of human cell line U-251 MG shows localization to cytosol.   Immunofluorescent staining of human cell line U-251 MG shows localization to cytosol.  

Antibody dilution

1:15   1:29  

Literature conformity

The subcellular location is supported by literature.   The subcellular location is supported by literature.  

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA001648

 

Antibody HPA005631

 

Standard validation

Uncertain   Uncertain  

   

Figure description

Immunohistochemical staining of human appendix shows strong cytoplasmic positivity in reaction center cells in lymphoid tissue.   Immunohistochemical staining of human pancreas shows strong cytoplasmic positivity in exocrine glandular cells.  

Expression

RNA: detected in 28 tissues
Protein: detected in 45 cell types
  RNA: detected in 28 tissues
Protein: detected in 60 cell types
 

Retrieval

HIER pH6   HIER pH6  

Antibody dilution

1:75   1:100  

Literature conformity

Partly consistent with extensive gene/protein characterization data.   Partly consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly not consistent with RNA expression data.   Mainly not consistent with RNA expression data.  
 

Standard validation

Approved    

   

Figure description

Cytoplasmic staining in subsets of neurons, most abundant in cortical regions.    

WESTERN BLOT

 
 

Antibody HPA001648

 

Antibody HPA005631

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Single band corresponding to the predicted size in kDa (+/-20%).
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

   

Figure description

Lane 1: Marker [kDa] 219, 112, 85, 49, 32, 25, 17.5
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 220, 112, 84, 47, 32, 26, 16.8
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

81.5, 73.2, 71.4, 70.8, 27.7, 25, 17.8   81.5, 73.2, 71.4, 70.8, 14.7  

Antibody dilution

1:500   1:250  

PROTEIN ARRAY

 
 

Antibody HPA001648

 

Antibody HPA005631

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Supported

Pass with single peak corresponding to interaction only with its own antigen.
 

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.  

Antibody dilution

1:2000   1:500  

ANTIGEN INFORMATION

 
 

Antibody HPA001648

 

Antibody HPA005631

 

Antigen

Recombinant protein fragment   Recombinant protein fragment  

Length (aa)

148   124  

Antigen sequence

LNSSDNQSGGSTASKGRYIPPHLRNREATKGFYDKDSSGWSSSKDKDAYS
SFGSRSDSRGKSSFFSDRGSGSRGRFDDRGRSDYDGIGSRGDRSGFGKFE
RGGNSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPV
 
LPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV
PSWLENMAYEHHYKGSSRGRSKSSRFSGGFGARDYRQSSGASSSSFSSSR
ASSSRSGGGGHGSSRGFGGGGYGG
 

Matching transcripts

DDX3Y-001 - ENSP00000353284 [85%]
DDX3Y-003 - ENSP00000336725 [85%]
DDX3Y-004 - ENSP00000398953 [85%]
DDX3Y-005 - ENSP00000400377 [85%]
  DDX3Y-001 - ENSP00000353284 [91%]
DDX3Y-003 - ENSP00000336725 [91%]
 

Other gene match

DDX3X - ENSG00000215301 [100%]
  DDX3X - ENSG00000215301 [100%]
 
ANTIGEN VIEW
DDX3Y-001
DDX3Y-003
DDX3Y-004
DDX3Y-005
 

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