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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:17.5RPKM
FANTOM5:39.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA056003

 

Glial cells

Low  

Neuronal cells

Not detected  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

17.5

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 17.5
Samples: 117

Max RPKM: 44.5
Min RPKM: 3.5
Std RPKM: 7.7
Median RPKM: 16.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 44.5
GTEX-13FLV-0011-R5a-SM-5LZWT 41.1
GTEX-13OW7-0011-R5b-SM-5O9DM 34.2
GTEX-13NYB-0011-R5a-SM-5MR45 32.5
GTEX-144GO-0011-R5a-SM-5PNUR 31.8
GTEX-13OVL-0011-R5b-SM-5L3FU 29.8
GTEX-13OW6-0011-R5a-SM-5O9BK 29.8
GTEX-12ZZX-0011-R5a-SM-5HL89 29.7
GTEX-13OW5-0011-R5b-SM-5L3FR 27.8
GTEX-11GSP-0011-R5a-SM-57WBE 27.7
GTEX-13SLX-0011-R5a-SM-5O9BV 27.3
GTEX-144GL-0011-R5b-SM-5PNUJ 27.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 27.0
GTEX-ZVT3-0011-R5a-SM-51MSI 27.0
GTEX-139TS-0011-R5b-SM-5J2MZ 26.8
GTEX-R55E-0011-R5A-SM-2TC5N 26.7
GTEX-XOTO-0011-R5A-SM-4B657 26.5
GTEX-NL3H-0011-R5a-SM-2I3GB 25.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 25.2
GTEX-12WSB-0011-R5b-SM-5GU67 24.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 24.9
GTEX-145MG-0011-R5b-SM-5S2VU 24.7
GTEX-13VXU-0011-R5a-SM-5O9D7 24.3
GTEX-13112-0011-R5b-SM-5DUV8 24.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 24.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 23.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 23.4
GTEX-WVLH-0011-R5A-SM-3MJFW 23.4
GTEX-YFC4-0011-R5a-SM-4RGLR 22.8
GTEX-11UD1-0011-R5b-SM-5P9FP 21.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 21.7
GTEX-13FLW-0011-R5a-SM-5LZX6 21.4
GTEX-S7SE-0011-R5A-SM-2XCDA 21.3
GTEX-13CIG-0011-R5b-SM-5L3F2 21.2
GTEX-ZE7O-0011-R5a-SM-57WBO 20.5
GTEX-13JVG-0011-R5a-SM-5MR4O 20.1
GTEX-N7MS-0011-R5a-SM-2HMK8 20.1
GTEX-X261-0011-R5A-SM-3NMB4 20.0
GTEX-13FXS-0011-R5b-SM-5LZYE 19.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 19.9
GTEX-1445S-0011-R5a-SM-5PNUS 19.6
GTEX-T5JC-0011-R5A-SM-32PLK 19.6
GTEX-WZTO-0011-R5B-SM-3NMC5 19.6
GTEX-14BIN-0011-R5b-SM-5SI78 19.3
GTEX-11WQC-0011-R5a-SM-5BC74 19.2
GTEX-RVPV-0011-R5A-SM-2TF69 19.1
GTEX-YJ89-0011-R5a-SM-4V6GM 19.0
GTEX-13OVH-0011-R5b-SM-5KM4L 18.7
GTEX-ZV68-0011-R5a-SM-4YCDW 18.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 18.5
GTEX-13CF2-0011-R5a-SM-5LZWS 18.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 18.2
GTEX-11OF3-0011-R5a-SM-57WB4 17.6
GTEX-14ABY-0011-R5b-SM-5SI7B 17.3
GTEX-13FHP-0011-R5b-SM-5LZY2 17.2
GTEX-13X6J-0011-R5b-SM-5PNWT 16.8
GTEX-T6MN-0011-R5A-SM-32QPD 16.8
GTEX-13S7M-0011-R5b-SM-5P9HS 16.7
GTEX-WWYW-0011-R5A-SM-3NB3E 16.4
GTEX-12WSD-0011-R5b-SM-5CVNG 16.3
GTEX-QVJO-0011-R5A-SM-2S1QM 16.2
GTEX-145MH-0011-R5a-SM-5P9JT 15.9
GTEX-OXRN-0011-R5A-SM-2I5EF 15.9
GTEX-13X6K-0011-R5b-SM-5PNUE 15.8
GTEX-ZXG5-0011-R5b-SM-57WBN 15.6
GTEX-139TT-0011-R5b-SM-5K7W8 15.5
GTEX-13G51-0011-R5a-SM-5L3EB 15.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 15.4
GTEX-N7MT-0011-R5a-SM-2I3G6 15.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 15.2
GTEX-131YS-0011-R5b-SM-5K7YB 15.2
GTEX-145LS-0011-R5a-SM-5SI65 15.2
GTEX-ZUA1-0011-R5b-SM-51MTG 15.1
GTEX-11NV4-0011-R5a-SM-5NQ88 15.0
GTEX-1313W-0011-R5b-SM-5L3EP 15.0
GTEX-RU72-0011-R5A-SM-2TF6U 15.0
GTEX-X4XX-0011-R5A-SM-46MWN 14.5
GTEX-NL4W-0011-R5a-SM-2I3GD 14.4
GTEX-13NYS-0011-R5a-SM-5MR4D 14.3
GTEX-13CZV-0011-R5a-SM-5K7XA 14.0
GTEX-13O3O-0011-R5b-SM-5KM44 13.9
GTEX-S7PM-0011-R5A-SM-3NM8G 13.8
GTEX-1399T-0011-R5b-SM-5IJDK 13.5
GTEX-PVOW-0011-R5A-SM-32PL7 13.2
GTEX-12WSC-0011-R5b-SM-5CVNS 13.1
GTEX-14BIM-0011-R5b-SM-5S2RM 13.0
GTEX-12WSA-0011-R5b-SM-5GU5I 12.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 12.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 12.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 12.4
GTEX-13NZA-0011-R5b-SM-5KM4K 11.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 11.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 11.4
GTEX-RVPU-0011-R5A-SM-2XCAD 11.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 10.5
GTEX-13X6I-0011-R5a-SM-5PNWW 9.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 9.8
GTEX-12WSF-0011-R5a-SM-5HL8K 9.6
GTEX-TSE9-0011-R5A-SM-3DB7J 9.5
GTEX-XMD1-0011-R5A-SM-4AT47 8.9
GTEX-13JUV-0011-R5a-SM-5LZY5 8.7
GTEX-NPJ7-0011-R5a-SM-33HBK 8.1
GTEX-UTHO-0011-R5A-SM-3GIJD 7.6
GTEX-1477Z-0011-R5b-SM-5PNUO 7.2
GTEX-T2IS-0011-R5A-SM-32QP4 6.9
GTEX-OHPN-0011-R5A-SM-2I5FF 6.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 6.7
GTEX-X585-0011-R5A-SM-46MVI 6.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 6.3
GTEX-WL46-0011-R5A-SM-3LK6V 6.1
GTEX-P44H-0011-R5A-SM-2XCEX 5.6
GTEX-QMR6-0011-R5A-SM-32PKT 5.6
GTEX-11H98-0011-R5b-SM-57WCF 5.3
GTEX-12WSH-0011-R5b-SM-5P9F3 5.2
GTEX-Z93S-0011-R5b-SM-4RGNI 4.0
GTEX-139T8-0011-R5b-SM-5J1MO 3.6
GTEX-132Q8-0011-R5a-SM-5IJDM 3.5
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

39.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 39.1
FF:10379-105H1 89 years, female 59.6
FF:10164-103B2 76 years, female 18.7

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