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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.9TPM
GTEx:11.0RPKM
FANTOM5:14.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA056003

  

Endothelial cells

 Low  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

4.9
overview Male, age 54
Sample 1
TPM: 2.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 1.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 0.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 3.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 1.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 21.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 1.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 0.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 8.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 1.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 3.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 10.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 6.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.0

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 16.4
Samples: 149

Max RPKM: 51.9
Min RPKM: 2.2
Std RPKM: 8.9
Median RPKM: 15
GTEX-13CF2-1826-SM-5N9GK 51.9
GTEX-13G51-2126-SM-5IJD9 42.6
GTEX-117XS-2226-SM-5GIE1 40.7
GTEX-11DXZ-1626-SM-5GIDI 40.1
GTEX-11GS4-1826-SM-5HL4T 38.9
GTEX-YECK-2826-SM-5IFHF 36.9
GTEX-131XE-1026-SM-5EGKE 35.1
GTEX-1212Z-1826-SM-5FQSH 33.6
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 6.8
Samples: 196

Max RPKM: 41.3
Min RPKM: 0.1
Std RPKM: 6.7
Median RPKM: 5.2
GTEX-11GSP-1626-SM-5986N 41.3
GTEX-11ZVC-2126-SM-5EGJ1 32.8
GTEX-U3ZH-1326-SM-4DXSF 28.8
GTEX-ZYFC-2626-SM-5NQ6S 26.1
GTEX-13OW5-2626-SM-5MR3M 21.1
GTEX-Y3I4-1426-SM-4TT9C 19.7
GTEX-SNMC-1126-SM-4DM5M 19.5
GTEX-13OW6-2126-SM-5N9GL 19.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

14.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 14.3
FF:10014-101C5 62,83,84 years, mixed 14.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.