We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
PICALM
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:32.1RPKM
FANTOM5:145.5Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Low
 

Antibody staining

Antibody HPA019053

 

Antibody HPA019061

 

Glial cells

Low   Not detected  

Neuronal cells

Low   Low  
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

32.1

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 32.1
Samples: 117

Max RPKM: 59
Min RPKM: 13
Std RPKM: 8.5
Median RPKM: 30.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 59.0
GTEX-PVOW-0011-R5A-SM-32PL7 58.8
GTEX-X585-0011-R5A-SM-46MVI 57.1
GTEX-X4XX-0011-R5A-SM-46MWN 56.5
GTEX-QMR6-0011-R5A-SM-32PKT 55.6
GTEX-WWYW-0011-R5A-SM-3NB3E 51.0
GTEX-13X6I-0011-R5a-SM-5PNWW 49.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 45.6
GTEX-T2IS-0011-R5A-SM-32QP4 45.5
GTEX-N7MS-0011-R5a-SM-2HMK8 44.1
GTEX-P44H-0011-R5A-SM-2XCEX 43.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 42.3
GTEX-QVJO-0011-R5A-SM-2S1QM 42.0
GTEX-12WSA-0011-R5b-SM-5GU5I 41.4
GTEX-12WSB-0011-R5b-SM-5GU67 41.0
GTEX-12WSF-0011-R5a-SM-5HL8K 40.7
GTEX-N7MT-0011-R5a-SM-2I3G6 39.7
GTEX-NL4W-0011-R5a-SM-2I3GD 39.5
GTEX-WZTO-0011-R5B-SM-3NMC5 39.5
GTEX-R55E-0011-R5A-SM-2TC5N 39.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 39.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 38.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 38.3
GTEX-11H98-0011-R5b-SM-57WCF 37.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 37.5
GTEX-XMD1-0011-R5A-SM-4AT47 37.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 37.3
GTEX-WL46-0011-R5A-SM-3LK6V 36.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 36.3
GTEX-13JVG-0011-R5a-SM-5MR4O 36.2
GTEX-145LS-0011-R5a-SM-5SI65 36.0
GTEX-WVLH-0011-R5A-SM-3MJFW 36.0
GTEX-UTHO-0011-R5A-SM-3GIJD 35.7
GTEX-13O3O-0011-R5b-SM-5KM44 34.7
GTEX-144GO-0011-R5a-SM-5PNUR 34.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 34.2
GTEX-1445S-0011-R5a-SM-5PNUS 33.7
GTEX-139TS-0011-R5b-SM-5J2MZ 33.4
GTEX-13OW6-0011-R5a-SM-5O9BK 33.2
GTEX-11GSP-0011-R5a-SM-57WBE 32.9
GTEX-11NV4-0011-R5a-SM-5NQ88 32.8
GTEX-NL3H-0011-R5a-SM-2I3GB 32.8
GTEX-13NYB-0011-R5a-SM-5MR45 32.7
GTEX-131YS-0011-R5b-SM-5K7YB 32.6
GTEX-13X6K-0011-R5b-SM-5PNUE 32.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 32.0
GTEX-132Q8-0011-R5a-SM-5IJDM 31.8
GTEX-YFC4-0011-R5a-SM-4RGLR 31.7
GTEX-1399T-0011-R5b-SM-5IJDK 31.6
GTEX-RVPU-0011-R5A-SM-2XCAD 31.6
GTEX-13FLV-0011-R5a-SM-5LZWT 31.4
GTEX-OHPN-0011-R5A-SM-2I5FF 31.4
GTEX-14BIN-0011-R5b-SM-5SI78 31.3
GTEX-NPJ7-0011-R5a-SM-33HBK 31.3
GTEX-S7SE-0011-R5A-SM-2XCDA 31.3
GTEX-T5JC-0011-R5A-SM-32PLK 31.2
GTEX-13OW7-0011-R5b-SM-5O9DM 31.1
GTEX-13NYS-0011-R5a-SM-5MR4D 30.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 30.7
GTEX-14BIM-0011-R5b-SM-5S2RM 30.6
GTEX-RVPV-0011-R5A-SM-2TF69 30.6
GTEX-Z93S-0011-R5b-SM-4RGNI 30.6
GTEX-ZXG5-0011-R5b-SM-57WBN 30.3
GTEX-13OVH-0011-R5b-SM-5KM4L 30.0
GTEX-ZVT3-0011-R5a-SM-51MSI 29.7
GTEX-13JUV-0011-R5a-SM-5LZY5 29.6
GTEX-11WQC-0011-R5a-SM-5BC74 29.5
GTEX-X261-0011-R5A-SM-3NMB4 29.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 29.0
GTEX-13CZV-0011-R5a-SM-5K7XA 29.0
GTEX-13FXS-0011-R5b-SM-5LZYE 28.8
GTEX-RU72-0011-R5A-SM-2TF6U 28.8
GTEX-T6MN-0011-R5A-SM-32QPD 28.7
GTEX-13OVL-0011-R5b-SM-5L3FU 28.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 28.4
GTEX-ZE7O-0011-R5a-SM-57WBO 28.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 28.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 28.1
GTEX-ZUA1-0011-R5b-SM-51MTG 28.1
GTEX-13SLX-0011-R5a-SM-5O9BV 27.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 27.8
GTEX-13S7M-0011-R5b-SM-5P9HS 27.7
GTEX-13OW5-0011-R5b-SM-5L3FR 27.4
GTEX-144GL-0011-R5b-SM-5PNUJ 27.4
GTEX-12WSD-0011-R5b-SM-5CVNG 27.2
GTEX-13112-0011-R5b-SM-5DUV8 27.2
GTEX-XOTO-0011-R5A-SM-4B657 27.2
GTEX-13G51-0011-R5a-SM-5L3EB 26.9
GTEX-13VXU-0011-R5a-SM-5O9D7 26.8
GTEX-14ABY-0011-R5b-SM-5SI7B 26.8
GTEX-145MH-0011-R5a-SM-5P9JT 26.6
GTEX-12WSC-0011-R5b-SM-5CVNS 26.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 26.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 26.0
GTEX-1313W-0011-R5b-SM-5L3EP 25.5
GTEX-13FLW-0011-R5a-SM-5LZX6 25.5
GTEX-13X6J-0011-R5b-SM-5PNWT 25.3
GTEX-S7PM-0011-R5A-SM-3NM8G 25.1
GTEX-12ZZX-0011-R5a-SM-5HL89 24.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 24.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 24.2
GTEX-11OF3-0011-R5a-SM-57WB4 24.1
GTEX-11UD1-0011-R5b-SM-5P9FP 23.7
GTEX-139T8-0011-R5b-SM-5J1MO 23.5
GTEX-13FHP-0011-R5b-SM-5LZY2 23.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 23.3
GTEX-ZV68-0011-R5a-SM-4YCDW 23.3
GTEX-1477Z-0011-R5b-SM-5PNUO 22.4
GTEX-TSE9-0011-R5A-SM-3DB7J 22.3
GTEX-139TT-0011-R5b-SM-5K7W8 21.5
GTEX-OXRN-0011-R5A-SM-2I5EF 21.3
GTEX-12WSH-0011-R5b-SM-5P9F3 20.9
GTEX-13CIG-0011-R5b-SM-5L3F2 20.7
GTEX-13CF2-0011-R5a-SM-5LZWS 19.7
GTEX-YJ89-0011-R5a-SM-4V6GM 17.7
GTEX-13NZA-0011-R5b-SM-5KM4K 16.0
GTEX-145MG-0011-R5b-SM-5S2VU 13.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

145.5

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 145.5
FF:10164-103B2 76 years, female 154.2
FF:10379-105H1 89 years, female 136.7

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.