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SCGN

SOFT TISSUE - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:1.6TPM
GTEx:2.6RPKM
FANTOM5:1.5Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:Not detected
Fibroblasts:Not detected
Chondrocytes:Not detected
 

Antibody staining

Antibody CAB004005

  

Antibody CAB068232

  

Adipocytes

 Not detected   Not detected  

Fibroblasts

 Not detected   Not detected  

Chondrocytes

 Not detected  
   
   
   

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:Not detected
Fibroblasts:Not detected
Peripheral nerve:Not detected
 

Antibody staining

Antibody HPA006641

  

Antibody CAB004005

  

Antibody CAB062563

  

Antibody CAB068232

  

Adipocytes

 Not detected   Not detected   Not detected   Not detected  

Fibroblasts

 Not detected   Not detected   Not detected   Not detected  

Peripheral nerve

 Not detected   Not detected   Not detected   Not detected  
       
       
       

ADIPOSE TISSUE - HPA RNA-seq

Average TPM

1.6
N/A Female, age 80
Sample 1
TPM: 0.5
Cell types%
Adipocytes: 95
Other cell types: 5
N/A Female, age 45
Sample 2
TPM: 4.2
N/A Female, age 57
Sample 3
TPM: 3.0
Cell types%
Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 74
Sample 4
TPM: 0.1
Cell types%
Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 59
Sample 5
TPM: 0.1
Cell types%
Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM

2.6

GTEx sample id

RPKM
 

Adipose - Subcutaneous
Adipose - Subcutaneous
RPKM: 2.5
Samples: 350

Max RPKM: 76.8
Min RPKM: 0
Std RPKM: 5
Median RPKM: 1.3
GTEX-12WSM-0226-SM-5LZV6 76.8
GTEX-1399U-2426-SM-5K7XB 23.8
GTEX-Y114-2326-SM-4TT7X 20.9
GTEX-ZYY3-0226-SM-5E45M 15.9
GTEX-13PDP-0226-SM-5K7W9 14.7
GTEX-ZQG8-1526-SM-5HL65 13.5
GTEX-13W3W-2526-SM-5SI9P 12.6
GTEX-YB5E-2126-SM-5IFI7 12.0
Show all
 

Adipose - Visceral (Omentum)
Adipose - Visceral (Omentum)
RPKM: 2.7
Samples: 227

Max RPKM: 36.1
Min RPKM: 0
Std RPKM: 4.1
Median RPKM: 1.3
GTEX-12WSM-0626-SM-5GCOK 36.1
GTEX-1122O-0926-SM-5N9C9 25.8
GTEX-XAJ8-0226-SM-4GIB2 25.1
GTEX-XBEW-1726-SM-4RGMA 16.2
GTEX-131XG-0126-SM-5K7UJ 12.4
GTEX-12WSL-1126-SM-5CVNK 12.2
GTEX-13OVG-1326-SM-5K7Y3 11.5
GTEX-Y5LM-0826-SM-4VDSW 11.5
Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million

1.5

FANTOM5 sample id

Sample description

Tags Per Million
Adipose tissue
Tags Per Million: 1.5
FF:10010-101C1 65,65,76 years, mixed 1.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.